|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-284 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 578.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00100 66 VAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00100 146 ITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYT 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00100 226 IKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIP 305
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00100 306 LLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFII 349
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-277 |
3.75e-102 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 303.64 E-value: 3.75e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTF---LeTWNIGVILLLTTMATAFMGYVLPWGQMSFWG 77
Cdd:COG1290 75 VEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 78 ATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FILPFVITALAVVHLLFLHETGSNNPTGI----PSNADK 152
Cdd:COG1290 154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDG 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 153 IPFHPYYTIKDILGILLLMTTLLTLTLFAPDllGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALA 230
Cdd:COG1290 234 VPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMG 311
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 805308614 231 LSILILALIPMLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQP 277
Cdd:COG1290 312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-141 |
2.75e-71 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 218.01 E-value: 2.75e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSY--TFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGA 78
Cdd:cd00284 58 VQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 805308614 79 TVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSN 141
Cdd:cd00284 138 TVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-139 |
2.95e-65 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 202.23 E-value: 2.95e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYG--SYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGA 78
Cdd:pfam00033 49 VQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 805308614 79 TVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETG 139
Cdd:pfam00033 129 TVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
193-274 |
1.16e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 50.18 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 193 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIPMLHT-SKQRSLMFRPLSQCLFwaLIADLLTLt 271
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVF--LFGTVVAL- 141
|
...
gi 805308614 272 WIG 274
Cdd:TIGR01156 142 WLG 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-284 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 578.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00100 66 VAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00100 146 ITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYT 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00100 226 IKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIP 305
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00100 306 LLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFII 349
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-284 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 524.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00119 67 VAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00119 147 ITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFS 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00119 227 YKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMP 306
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00119 307 FLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-284 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 518.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00131 66 VAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00131 146 ITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFS 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00131 226 YKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVP 305
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00131 306 ILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFII 349
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-283 |
5.29e-180 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 500.75 E-value: 5.29e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00074 67 VAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00074 147 ITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFS 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00074 227 YKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIP 306
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFI 283
Cdd:MTH00074 307 MLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFI 349
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-284 |
4.74e-177 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 492.51 E-value: 4.74e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00191 63 VVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATV 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00191 143 ITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFS 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00191 223 YKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLP 302
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00191 303 LLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFIL 346
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-284 |
2.99e-172 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 480.05 E-value: 2.99e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00156 56 VIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATV 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00156 136 ITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFT 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00156 216 FKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILP 295
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00156 296 FTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYIL 339
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-284 |
1.49e-163 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 458.99 E-value: 1.49e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00145 67 VIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00145 147 ITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYT 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00145 227 IKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLP 306
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00145 307 LLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYET 350
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-284 |
4.60e-162 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 455.32 E-value: 4.60e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00034 66 VSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00034 146 ITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFT 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00034 226 TKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVP 305
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00034 306 ILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFIL 349
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-283 |
3.75e-159 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 447.59 E-value: 3.75e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00016 67 VAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00016 147 ITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYT 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00016 227 SKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLP 306
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFI 283
Cdd:MTH00016 307 FIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYE 349
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-284 |
1.63e-142 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 405.62 E-value: 1.63e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00022 65 VGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATV 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00022 145 ITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00022 225 SKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLP 304
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00022 305 LLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFIL 348
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-284 |
4.28e-137 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 391.98 E-value: 4.28e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00224 67 VAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00224 147 ITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYS 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00224 227 IKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILP 306
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00224 307 LTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEG 350
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-284 |
4.98e-137 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 391.76 E-value: 4.98e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00053 67 VAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00053 147 ITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYV 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00053 227 LKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLP 306
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00053 307 YLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYIL 350
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-277 |
2.79e-103 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 306.09 E-value: 2.79e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00033 63 VAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATV 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00033 143 ITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFT 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILG--ILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILAL 238
Cdd:MTH00033 223 IKDILGflILFGVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLL 302
|
250 260 270
....*....|....*....|....*....|....*....
gi 805308614 239 IPMLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQP 277
Cdd:MTH00033 303 MPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAP 341
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-277 |
3.75e-102 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 303.64 E-value: 3.75e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTF---LeTWNIGVILLLTTMATAFMGYVLPWGQMSFWG 77
Cdd:COG1290 75 VEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 78 ATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FILPFVITALAVVHLLFLHETGSNNPTGI----PSNADK 152
Cdd:COG1290 154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDG 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 153 IPFHPYYTIKDILGILLLMTTLLTLTLFAPDllGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALA 230
Cdd:COG1290 234 VPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMG 311
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 805308614 231 LSILILALIPMLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQP 277
Cdd:COG1290 312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-284 |
1.01e-90 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 272.97 E-value: 1.01e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATV 80
Cdd:MTH00086 55 VQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVV 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 81 ITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYT 160
Cdd:MTH00086 135 ITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYW 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 161 IKDILGIlLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIP 240
Cdd:MTH00086 215 NKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFI 293
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 805308614 241 MLHTSKQrslMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00086 294 FVNNYTS---CLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLF 334
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
10-284 |
1.04e-75 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 234.88 E-value: 1.04e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 10 YGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIP 89
Cdd:MTH00046 66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 90 YIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSNNPTGIPSN-ADKIPFHPYYTIKDILGIL 168
Cdd:MTH00046 146 IVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFM 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 169 LLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILIlalipMLHTSKQR 248
Cdd:MTH00046 226 VVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFF-----LWVPTFNG 300
|
250 260 270
....*....|....*....|....*....|....*.
gi 805308614 249 SLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:MTH00046 301 SSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLL 336
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-141 |
2.75e-71 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 218.01 E-value: 2.75e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSY--TFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGA 78
Cdd:cd00284 58 VQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 805308614 79 TVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETGSN 141
Cdd:cd00284 138 TVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-139 |
2.95e-65 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 202.23 E-value: 2.95e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYG--SYTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGA 78
Cdd:pfam00033 49 VQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 805308614 79 TVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAVVHLLFLHETG 139
Cdd:pfam00033 129 TVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
142-284 |
6.67e-48 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 156.65 E-value: 6.67e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 142 NPTGIPSNADKIPFHPYYTIKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPN 221
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 805308614 222 KLGGVLALALSILILALIPMLHTSKQRSlMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFII 284
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSL 142
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
23-188 |
1.55e-44 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 148.54 E-value: 1.55e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 23 SIFFICLFTHVGRGLYYGSYTFLE--TWNIGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 100
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 101 GGFSVDKATLTRFFAFHF-ILPFVITALAVVHLLFLHETGSNNPTGIPSNADKIPFHPYYTIKDILGILLLMTTLLTLTL 179
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 805308614 180 FAPDLLGDP 188
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
193-284 |
5.13e-35 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 121.82 E-value: 5.13e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 193 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIPMLHTSKQRSLMFRPLSQCLFWALIADLLTLTW 272
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90
....*....|..
gi 805308614 273 IGGQPVEHPFII 284
Cdd:pfam00032 81 LGKQPPTGPYTL 92
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-143 |
2.94e-28 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 107.88 E-value: 2.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLE--TWNIGVILLLTTMATAFMGYVLPWGQMSFWGA 78
Cdd:PRK03735 77 VYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFAT 156
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 805308614 79 TVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FILPFVITALAVVHLLFLHETGSNNP 143
Cdd:PRK03735 157 KVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-143 |
6.11e-25 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 99.02 E-value: 6.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 1 VTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSYTFLE--TWNIGVILLLTTMATAFMGYVLPWGQMSFWGA 78
Cdd:CHL00070 69 VQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAV 148
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 805308614 79 TVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FILPFVITALAVVHLLFLHETGSNNP 143
Cdd:CHL00070 149 KIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
193-274 |
1.29e-08 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 53.26 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 193 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIPMLHT-SKQRSLMFRPLSQCLFwaLIADLLTLt 271
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVF--LFGTLVTL- 142
|
...
gi 805308614 272 WIG 274
Cdd:COG5679 143 WLG 145
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
193-274 |
1.16e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 50.18 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805308614 193 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIPMLHT-SKQRSLMFRPLSQCLFwaLIADLLTLt 271
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVF--LFGTVVAL- 141
|
...
gi 805308614 272 WIG 274
Cdd:TIGR01156 142 WLG 144
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
193-226 |
1.62e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 50.00 E-value: 1.62e-07
10 20 30
....*....|....*....|....*....|....
gi 805308614 193 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGV 226
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
|
|
| |
