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Conserved domains on  [gi|78103403|sp|Q02123|]
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RecName: Full=RNA silencing suppressor; AltName: Full=14 kDa protein; AltName: Full=Putative nucleic acid-binding protein

Protein Classification

Carla_C4 domain-containing protein( domain architecture ID 10483056)

Carla_C4 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Carla_C4 pfam01623
Carlavirus putative nucleic acid binding protein; This family of carlavirus nucleic acid ...
 5-97 1.29e-32

Carlavirus putative nucleic acid binding protein; This family of carlavirus nucleic acid binding proteins includes a motif for a potential C-4 type zinc finger this has four highly conserved cysteine residues and is a conserved feature of the carlaviruses 3' terminal ORF. These proteins may function as viral transcriptional regulators. The carlavirus family includes garlic latent virus and potato virus S and M, these viruses are positive strand, ssRNA with no DNA stage.


:

Pssm-ID: 250753  Cd Length: 91  Bit Score: 109.78  E-value: 1.29e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78103403     5 RKVLALMQVFRERYDHkCDFNFCDIAVSIVCRSELDFINEpGLSNYAKRRRARRLGRCVRCFRVNPGFYFTKRCDGITCV 84
Cdd:pfam01623   1 MKARVLLLLLRAVYKL-GGVFPFDICVDIISRIAAKIVGG-GRSKYARRRRARSIGRCHRCYRVYPPFVFTSKCDNRTCV 78

                          90
                  ....*....|...
gi 78103403    85 PGISWNYDVEDYI 97
Cdd:pfam01623  79 PGISYNYKVADFI 91
 
Name Accession Description Interval E-value
Carla_C4 pfam01623
Carlavirus putative nucleic acid binding protein; This family of carlavirus nucleic acid ...
 5-97 1.29e-32

Carlavirus putative nucleic acid binding protein; This family of carlavirus nucleic acid binding proteins includes a motif for a potential C-4 type zinc finger this has four highly conserved cysteine residues and is a conserved feature of the carlaviruses 3' terminal ORF. These proteins may function as viral transcriptional regulators. The carlavirus family includes garlic latent virus and potato virus S and M, these viruses are positive strand, ssRNA with no DNA stage.


Pssm-ID: 250753  Cd Length: 91  Bit Score: 109.78  E-value: 1.29e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78103403     5 RKVLALMQVFRERYDHkCDFNFCDIAVSIVCRSELDFINEpGLSNYAKRRRARRLGRCVRCFRVNPGFYFTKRCDGITCV 84
Cdd:pfam01623   1 MKARVLLLLLRAVYKL-GGVFPFDICVDIISRIAAKIVGG-GRSKYARRRRARSIGRCHRCYRVYPPFVFTSKCDNRTCV 78

                          90
                  ....*....|...
gi 78103403    85 PGISWNYDVEDYI 97
Cdd:pfam01623  79 PGISYNYKVADFI 91
 
Name Accession Description Interval E-value
Carla_C4 pfam01623
Carlavirus putative nucleic acid binding protein; This family of carlavirus nucleic acid ...
 5-97 1.29e-32

Carlavirus putative nucleic acid binding protein; This family of carlavirus nucleic acid binding proteins includes a motif for a potential C-4 type zinc finger this has four highly conserved cysteine residues and is a conserved feature of the carlaviruses 3' terminal ORF. These proteins may function as viral transcriptional regulators. The carlavirus family includes garlic latent virus and potato virus S and M, these viruses are positive strand, ssRNA with no DNA stage.


Pssm-ID: 250753  Cd Length: 91  Bit Score: 109.78  E-value: 1.29e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78103403     5 RKVLALMQVFRERYDHkCDFNFCDIAVSIVCRSELDFINEpGLSNYAKRRRARRLGRCVRCFRVNPGFYFTKRCDGITCV 84
Cdd:pfam01623   1 MKARVLLLLLRAVYKL-GGVFPFDICVDIISRIAAKIVGG-GRSKYARRRRARSIGRCHRCYRVYPPFVFTSKCDNRTCV 78

                          90
                  ....*....|...
gi 78103403    85 PGISWNYDVEDYI 97
Cdd:pfam01623  79 PGISYNYKVADFI 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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