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Conserved domains on  [gi|770593290|gb|AJW76413|]
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NADH dehydrogenase subunit 3 [Chorotypus fenestratus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.16e-35

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 118.04  E-value: 1.16e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSN-DREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMT 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYsDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 770593290  80 LNTSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.16e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 118.04  E-value: 1.16e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSN-DREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMT 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYsDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 770593290  80 LNTSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 1.70e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.02  E-value: 1.70e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   20 VTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNtSNMIMWTLSLSSFTIIL 99
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 770593290  100 IMGTYYEWSQGSLQ 113
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-114 1.68e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.39  E-value: 1.68e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   2 FLMMMSITMTITILSIIkvTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLN 81
Cdd:COG0838    8 ILIFLLVALGLALAMLL--LSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|...
gi 770593290  82 TSNMIMWtLSLSSFTIILIMGTYYEWSQGSLQW 114
Cdd:COG0838   86 ELGWFGL-IEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.16e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 118.04  E-value: 1.16e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSN-DREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMT 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYsDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 770593290  80 LNTSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 3.51e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 114.32  E-value: 3.51e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSN-DREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMT 79
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLmDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 770593290  80 LNTSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQWAE 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 4.41e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 113.72  E-value: 4.41e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   3 LMMMSITMTITILSIIKVTSTMLSKKS-NDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLN 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSiMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 770593290  82 TSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.50e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 105.00  E-value: 1.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPF---I 77
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgD 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 770593290  78 MTLNTSNMIMWTlslSSFTIILIMGTYYEWSQGSLQWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWA---TAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 4.97e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 103.91  E-value: 4.97e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTL 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 770593290  81 NTSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQWAE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-116 2.50e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 99.30  E-value: 2.50e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   4 MMMSITMTITILSIIKVT-STMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPF---IMT 79
Cdd:MTH00069   1 LIMLMLLISTILSLILITiSFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 770593290  80 LNTSNMIMWTlslssfTIILI---MGTYYEWSQGSLQWAE 116
Cdd:MTH00069  81 NTPTNTLFWS------TLILIlltLGLIYEWIQGGLEWAE 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 4.92e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 98.43  E-value: 4.92e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTL 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 770593290  81 NTSNmiMWTLSLSSFTIILIMGTYYEWSQGSLQW 114
Cdd:MTH00203  81 QLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 2.52e-27

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 96.85  E-value: 2.52e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILsIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTL 80
Cdd:MTH00012   3 LMMIPMMISLILPPL-VLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTIL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 770593290  81 NTSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQWA 115
Cdd:MTH00012  82 MTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 4-115 2.82e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 94.18  E-value: 2.82e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   4 MMMSITMTITILSIIKVT-STMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNT 82
Cdd:MTH00113   2 NLISMLTISLALSTILTTlNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 770593290  83 SNMIMWTLSLSSFTIILIMGTYYEWSQGSLQWA 115
Cdd:MTH00113  82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 4-116 8.11e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 93.08  E-value: 8.11e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   4 MMMSITMTITILSIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNTS 83
Cdd:MTH00106   3 LMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 770593290  84 NMIMWTLSLSSFTIILIMGTYYEWSQGSLQWAE 116
Cdd:MTH00106  83 NLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 1.70e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.02  E-value: 1.70e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   20 VTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNtSNMIMWTLSLSSFTIIL 99
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 770593290  100 IMGTYYEWSQGSLQ 113
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 8-114 1.40e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 82.45  E-value: 1.40e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   8 ITMTITILSIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNTSNMI- 86
Cdd:MTH00055  12 LLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFg 91

                         90       100
                 ....*....|....*....|....*...
gi 770593290  87 MWTLSLssFTIILIMGTYYEWSQGSLQW 114
Cdd:MTH00055  92 FWVMYL--FLIILTIGLIYEWVKGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 20-115 1.02e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 80.29  E-value: 1.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290  20 VTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNTSNMIMWtLSLSSFTIIL 99
Cdd:PRK06602  27 VAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGF-VEAMIFILVL 105

                         90
                 ....*....|....*.
gi 770593290 100 IMGTYYEWSQGSLQWA 115
Cdd:PRK06602 106 LVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-114 1.68e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 79.39  E-value: 1.68e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   2 FLMMMSITMTITILSIIkvTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLN 81
Cdd:COG0838    8 ILIFLLVALGLALAMLL--LSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|...
gi 770593290  82 TSNMIMWtLSLSSFTIILIMGTYYEWSQGSLQW 114
Cdd:COG0838   86 ELGWFGL-IEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 11-114 2.22e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 78.95  E-value: 2.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290  11 TITILSIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNTSNMI-MWT 89
Cdd:MTH00018  10 SVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFgFWT 89

                         90       100
                 ....*....|....*....|....*
gi 770593290  90 LSLssFTIILIMGTYYEWSQGSLQW 114
Cdd:MTH00018  90 MVG--FLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-114 2.56e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.49  E-value: 2.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290  31 DREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNTSNMIMWTLsLSSFTIILIMGTYYEWSQG 110
Cdd:MTH00030  40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWI-VYTFLIVLAIGLAYEWIKG 118


                 ....
gi 770593290 111 SLQW 114
Cdd:MTH00030 119 GLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 2-114 1.68e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 56.53  E-value: 1.68e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   2 FLMMMSITMTITILSIIkvTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLN 81
Cdd:CHL00022  10 FWAFLIISSLIPILAFL--ISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFD 87

                         90       100       110
                 ....*....|....*....|....*....|...
gi 770593290  82 TSNMIMWtLSLSSFTIILIMGTYYEWSQGSLQW 114
Cdd:CHL00022  88 VLGVSAF-IEALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 3-114 2.48e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 48.13  E-value: 2.48e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   3 LMMMSITMTITILSIikVTSTMLSKKSNDREKSSPFECGFEPKTSARMP--FSLRFFLIAVIFLIFDVEIALIMPFIMTL 80
Cdd:PRK07928   8 LVLGALAAAFAVVSV--VVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSF 85

                         90       100       110
                 ....*....|....*....|....*....|....
gi 770593290  81 NtSNMIMWTLSLSSFTIILIMGTYYEWSQGSLQW 114
Cdd:PRK07928  86 D-ALGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
24-114 6.60e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 47.04  E-value: 6.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290  24 MLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNTSNMIMwTLSLSSFTIILIMGT 103
Cdd:PRK07756  32 MLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFA-LIEMLIFVVMLLVGL 110

                         90
                 ....*....|.
gi 770593290 104 YYEWSQGSLQW 114
Cdd:PRK07756 111 AYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-114 1.04e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 46.97  E-value: 1.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSiiKVTSTMLSKKSNDREKSSPFECGFEPkTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTL 80
Cdd:PRK08489  16 LLVLTFVAFFLTTRLA--RFISRKLAQKNTEKLKLAIYECGPEP-VKQPNRISSHFYIMALLFILFDVEIVFMFPWAVDF 92

                         90       100       110
                 ....*....|....*....|....*....|....
gi 770593290  81 NTSNMIMWtLSLSSFTIILIMGTYYEWSQGSLQW 114
Cdd:PRK08489  93 KLLGLFGL-IEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 1.36e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 43.34  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290   1 MFLMMMSITMTITILSIIKVTSTMLSKKSNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTL 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSD 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 770593290  81 NTSNMIMWTLslssfTIILIMGTYYEWSQGSLQW 114
Cdd:MTH00092  81 FSSLISFFML-----MIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 29-76 7.72e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.41  E-value: 7.72e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 770593290  29 SNDREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALI--MPF 76
Cdd:MTH00060  32 SGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLlnMPF 81
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 31-114 9.06e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 33.63  E-value: 9.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593290  31 DREKSSPFECGFEPKTSARMPFSLRFFLIAVIFLIFDVEIALIMPFIMTLNTSNMIMWTLSLsSFTIILIMGTYYEWSQG 110
Cdd:PRK06432  60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETL-IFLAMPLFAVYYAFKMG 138


                 ....
gi 770593290 111 SLQW 114
Cdd:PRK06432 139 YMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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