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Conserved domains on  [gi|770593226|gb|AJW76354|]
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cytochrome b (mitochondrion) [Cylindraustralia sp. HS-2014]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 657.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  12 FKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  92 FICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFAL 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 172 NNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSLSLLEPYYL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQFMFWLLTI 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 770593226 332 TFILLTWIGARPVEDPYIITGQILTCIYFLIYISWP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 657.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  12 FKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  92 FICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFAL 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 172 NNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSLSLLEPYYL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQFMFWLLTI 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 770593226 332 TFILLTWIGARPVEDPYIITGQILTCIYFLIYISWP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-369 8.97e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 349.47  E-value: 8.97e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  10 PLFKIINYSLiDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGAS 89
Cdd:COG1290   19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  90 FFFICIYLHIGRGIYYGSY-----LfmhTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQW 164
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 165 IWGGFALNNATLTRFFTLH-FLLPFIIVALTAIHLFFLHQTGSNNPLG----LNSNFDKIPFHPYFTFKDSITFTIIIMS 239
Cdd:COG1290  175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGV 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 240 LLSLSLLEPyyLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVSSIAILVILPLYNFNKFRGFQ 317
Cdd:COG1290  255 FALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPR 332

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 770593226 318 FYPMGQFMFWLLTITFILLTWIGARPveDPYIITGQILTCIYFLIY-ISWPIM 369
Cdd:COG1290  333 YRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFlIVLPIL 383
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.24e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 255.76  E-value: 1.24e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  10 PLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  90 FFFICIYLHIGRGIYYGSYLFMH--TWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 770593226 168 GFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.06e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 233.81  E-value: 3.06e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   19 LIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   99 IGRGIYYGSYLFMH--TWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFALNNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 770593226  177 TRFFTLHFLLPFIIVALTAIHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-345 8.61e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.11  E-value: 8.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILP-LYNFNKFRGFQFYPMGQFMFWLLTITFILLT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIENVNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 770593226  338 WIGARPVE 345
Cdd:TIGR01156 145 IGATLPID 152
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 657.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  12 FKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  92 FICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFAL 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 172 NNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSLSLLEPYYL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQFMFWLLTI 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 770593226 332 TFILLTWIGARPVEDPYIITGQILTCIYFLIYISWP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 609.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   1 MNKPLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLL 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  81 RTLHANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTT 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 161 LVQWIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 241 LSLSLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 770593226 321 MGQFMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYISWPIMNIYWDIMLD 378
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILD 378
CYTB MTH00119
cytochrome b; Provisional
 1-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 597.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   1 MNKPLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLL 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  81 RTLHANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 161 LVQWIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 241 LSLSLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 770593226 321 MGQFMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYI 364
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILL 364
CYTB MTH00191
cytochrome b; Provisional
 5-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 591.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   5 LRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  85 ANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 165 IWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSLS 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 245 LLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQF 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 770593226 325 MFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYI 364
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFL 360
CYTB MTH00131
cytochrome b; Provisional
 5-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 588.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   5 LRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLH 84
Cdd:MTH00131   4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  85 ANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQW 164
Cdd:MTH00131  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 165 IWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSLS 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 245 LLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQF 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 770593226 325 MFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYI 364
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00074
cytochrome b; Provisional
 1-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 577.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   1 MNKPLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLL 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  81 RTLHANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 161 LVQWIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 241 LSLSLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 770593226 321 MGQFMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYI 364
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFI 364
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 577.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   1 MNKPLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLL 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  81 RTLHANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTT 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 161 LVQWIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 241 LSLSLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 770593226 321 MGQFMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYISWPIMNIYWDIMLD 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00100
cytochrome b; Provisional
 4-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 573.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   4 PLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTL 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  84 HANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQ 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 164 WIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSL 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 244 SLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 770593226 324 FMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYF-LIYISWPIMNIYWDIML 377
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFlIILILMPIASLIENNLL 377
CYTB MTH00034
cytochrome b; Validated
 4-366 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 555.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   4 PLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTL 83
Cdd:MTH00034   3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  84 HANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQ 163
Cdd:MTH00034  83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 164 WIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSL 243
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 244 SLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQ 323
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 770593226 324 FMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYISW 366
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFF 365
CYTB MTH00224
cytochrome b; Provisional
 1-377 1.11e-178

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 501.37  E-value: 1.11e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   1 MNKPLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLL 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  81 RTLHANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTT 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 161 LVQWIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 241 LSLSLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 770593226 321 MGQFMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYISWPIMNIYWDIML 377
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 4-366 4.43e-173

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 486.90  E-value: 4.43e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   4 PLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTL 83
Cdd:MTH00022   2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  84 HANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQ 163
Cdd:MTH00022  82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 164 WIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSL 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 244 SLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 770593226 324 FMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYISW 366
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVL 364
CYTB MTH00053
cytochrome b; Provisional
 1-364 4.36e-167

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 471.88  E-value: 4.36e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   1 MNKPLRVMHPLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLL 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  81 RTLHANGASFFFICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTT 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 161 LVQWIWGGFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 241 LSLSLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 770593226 321 MGQFMFWLLTITFILLTWIGARPVEDPYIITGQILTCIYFLIYI 364
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFL 364
CYTB MTH00033
cytochrome b; Provisional
 19-360 1.21e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 376.97  E-value: 1.21e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  19 LIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFFFICIYLH 98
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  99 IGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFALNNATLTR 178
Cdd:MTH00033  95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 179 FFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFtIIIMSLLSLSLLEPY---YLGDPD 255
Cdd:MTH00033 175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGF-LILFGVFVIIGIEPRietLLQDPE 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 256 NFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQFMFWLLTITFIL 335
Cdd:MTH00033 254 NFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFII 333

                        330       340
                 ....*....|....*....|....*.
gi 770593226 336 LTWIGARPV-EDPYIITGQILTCIYF 360
Cdd:MTH00033 334 LTWIGSAPAgADPYVLIGRIATIFYF 359
CYTB MTH00086
cytochrome b; Provisional
 13-364 7.07e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 348.47  E-value: 7.07e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  13 KIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  93 ICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFALN 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 173 NATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFtIIIMSLLSLSLLEPYYLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 253 DPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNfNKFRGFQfyPMGQFMFWLLTIT 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN-NYTSCLN--KLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|..
gi 770593226 333 FILLTWIGARPVEDPYIITGQILTCIYFLIYI 364
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLIL 348
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-369 8.97e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 349.47  E-value: 8.97e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  10 PLFKIINYSLiDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGAS 89
Cdd:COG1290   19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  90 FFFICIYLHIGRGIYYGSY-----LfmhTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQW 164
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 165 IWGGFALNNATLTRFFTLH-FLLPFIIVALTAIHLFFLHQTGSNNPLG----LNSNFDKIPFHPYFTFKDSITFTIIIMS 239
Cdd:COG1290  175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGV 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 240 LLSLSLLEPyyLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVSSIAILVILPLYNFNKFRGFQ 317
Cdd:COG1290  255 FALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPR 332

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 770593226 318 FYPMGQFMFWLLTITFILLTWIGARPveDPYIITGQILTCIYFLIY-ISWPIM 369
Cdd:COG1290  333 YRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFlIVLPIL 383
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.24e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 255.76  E-value: 1.24e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  10 PLFKIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  90 FFFICIYLHIGRGIYYGSYLFMH--TWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 770593226 168 GFALNNATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-354 2.97e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 260.30  E-value: 2.97e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  13 KIINYSLIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFFF 92
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  93 ICIYLHIGRGIYYGSYLFMHTWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFALN 172
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 173 NATLTRFFTLHFLLPFIIVALTAIHLFFLHQTGSNNPLGLNSNF-DKIPFHPYFTFKDSITFTIIIMSLLSLSLLEPYYL 251
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGviaLVSSIAILVILPLYNFNKFRGFQFYPmgQFMFWLLTI 331
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVLVLSFLFFLWVPTFNGSSVYSVWR--QVNFWLIVS 317

                        330       340
                 ....*....|....*....|...
gi 770593226 332 TFILLTWIGARPVEDPYIITGQI 354
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQL 340
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.06e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 233.81  E-value: 3.06e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   19 LIDLPAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   99 IGRGIYYGSYLFMH--TWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFALNNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 770593226  177 TRFFTLHFLLPFIIVALTAIHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 1.30e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 151.63  E-value: 1.30e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226   89 SFFFICIYLHIGRGIYYGSYLFMH--TWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  167 GGFALNNATLTRFFTLHF-LLPFIIVALTAIHLFFLHQTGSNNPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSLSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 770593226  246 LEPYYLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 4.22e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 149.33  E-value: 4.22e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 208 NPLGLNSNFDKIPFHPYFTFKDSITFTIIIMSLLSLSLLEPYYLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 770593226 288 KLGGVIALVSSIAILVILPLYNFNKFRGfQFYPMGQFMFWLLTITFILLTWIGARPVEDPYIITGQI 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 5.86e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.23  E-value: 5.86e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILPLYNFNKFRGFQFYPMGQFMFWLLTITFILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 770593226  339 IGARPVEDPYIITGQILTCIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 9.84e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.91  E-value: 9.84e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  23 PAPINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFFFICIYLHIGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 103 IYYGSYLFMH--TWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFALNNATLTRFF 180
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 770593226 181 TLH-FLLPFIIVALTAIHLFFLHQTGSNNPL 210
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 4.01e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 112.12  E-value: 4.01e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  25 PINISMWWNLGSLLGLCLIIQLLTGIFLAMHYTADIEMAFSSVIHICRDVNNGWLLRTLHANGASFFFICIYLHIGRGIY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 105 YGSYLFMH--TWMIGVVILFITMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTTLVQWIWGGFALNNATLTRFFTL 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 770593226 183 H-FLLPFIIVALTAIHLFFLHQTGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 247-341 2.18e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.64  E-value: 2.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 247 EPYYLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILP-LYNFNKFRGFQFYPMGQFM 325
Cdd:CHL00058  58 EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPfLENVNKFQNPFRRPVATTV 132

                         90
                 ....*....|....*.
gi 770593226 326 FWLLTITFILLTwIGA 341
Cdd:CHL00058 133 FLIGTAVALWLG-IGA 147
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-346 1.43e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.42  E-value: 1.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILP-LYNFNKFRGFQFYPMGQFMFWLLTITFILLT 337
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPfIENVNKFQNPFRRPVATAVFLFGTLVTLWLG 145


                 ....*....
gi 770593226 338 WIGARPVED 346
Cdd:COG5679  146 IGAALPIDK 154
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-345 8.61e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.11  E-value: 8.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 770593226  259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVSSIAILVILP-LYNFNKFRGFQFYPMGQFMFWLLTITFILLT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIENVNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 770593226  338 WIGARPVE 345
Cdd:TIGR01156 145 IGATLPID 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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