NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|768898667|gb|AJW26729|]
View 

Ski3p [Saccharomyces cerevisiae YJM975]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TPR_22 pfam18833
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 151-241 4.13e-28

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (two repeat units) that are not matched by pfam00515.


:

Pssm-ID: 436771  Cd Length: 92  Bit Score: 109.17  E-value: 4.13e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   151 PGSLMAETIGRHLSTPQDALLNLIKILSNIETTEIGKTLSQNRLKLKASDPD-YQIKLNSFSWEIIKNSEIDQLYNQLVN 229
Cdd:pfam18833    1 PGSPLGELLGGRLPHPSETLKKLIDILEKEEKKEISKLISKERLKLGANLTQvQEVKLNSIAWSVYKDSELEELYEQLIN 80

                           90
                   ....*....|..
gi 768898667   230 ILADDQKRSEIE 241
Cdd:pfam18833   81 WTDDDELRRKYE 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
620-804 3.88e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 3.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  620 IKILDTFAPGFSTLGDIYcHYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELR 699
Cdd:COG0457     1 LELDPDDAEAYNNLGLAY-RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  700 SNnwpfrvVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAIS 779
Cdd:COG0457    80 NN------LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                         170       180
                  ....*....|....*....|....*
gi 768898667  780 LCDVGEYLESLDILEKVCQEAATEE 804
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAAL 178
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 412-836 2.97e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 2.97e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   412 TVLTENIvkckNNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIKDLGVHLPLTKREFSLDLATVY---------- 481
Cdd:TIGR02917  184 EVLTADP----GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHadallkkapn 259

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   482 ----TYVDA-----PKDHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSK 552
Cdd:TIGR02917  260 splaHYLKAlvdfqKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   553 AHMGYMDEALA------GLDTVIKGIkgMDLRSIDFRALNLWRQAKVYIMKhASINDAkqENVKCAFKLliqsikildtf 626
Cdd:TIGR02917  340 LRLGRVDEAIAtlspalGLDPDDPAA--LSLLGEAYLALGDFEKAAEYLAK-ATELDP--ENAAARTQL----------- 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   627 apGFSTLGDiychyyKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAElrsnnwPFR 706
Cdd:TIGR02917  404 --GISKLSQ------GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS------LHN 469

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   707 VVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEY 786
Cdd:TIGR02917  470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 768898667   787 LESLDILEKVCQEAATEESFQIGLVEVLMrcsldlySQGFLLKSVSIAKD 836
Cdd:TIGR02917  550 EEAVAWLEKAAELNPQEIEPALALAQYYL-------GKGQLKKALAILNE 592
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 970-1068 9.32e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 9.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  970 AAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSL 1048
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLgRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100
                  ....*....|....*....|
gi 768898667 1049 APQDSSPWLGMALILEEQGD 1068
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGD 100
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1018-1325 1.45e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1018 ATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGDIIGSSKLFAHSfILSNGRSKAAQFMYAkn 1097
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL-LERDPDRAEALLELA-- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1098 vlENHINNGDDERdietveklttASIALEQFFKKSPDNQFALQCALLTLERLHHYENANELANRLIGILEKKfektqder 1177
Cdd:COG2956    84 --QDYLKAGLLDR----------AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-------- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1178 elfnfAIIKGQFARIHLGLGNFELSIENadLSQGIiseSSDEKSMKTKISnhicLGLSYFFLNDFDQTLNQFQELLSISK 1257
Cdd:COG2956   144 -----AHAYCELAELYLEQGDYDEAIEA--LEKAL---KLDPDCARALLL----LAELYLEQGDYEEAIAALERALEQDP 209

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768898667 1258 DSKHLVVLIAKVLYDVGESDTkeiALQELTEYIATSGADLLVTLTIAAMSILDDKREDLSIILEELKA 1325
Cdd:COG2956   210 DYLPALPRLAELYEKLGDPEE---ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-87 1.16e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667    2 SDIKQLLKEAKQELTNRDYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNL 81
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL---------GDLDEAIVLLHEALELDPDEP 72


                  ....*.
gi 768898667   82 LAWKGL 87
Cdd:COG4783    73 EARLNL 78
 
Name Accession Description Interval E-value
TPR_22 pfam18833
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 151-241 4.13e-28

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (two repeat units) that are not matched by pfam00515.


Pssm-ID: 436771  Cd Length: 92  Bit Score: 109.17  E-value: 4.13e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   151 PGSLMAETIGRHLSTPQDALLNLIKILSNIETTEIGKTLSQNRLKLKASDPD-YQIKLNSFSWEIIKNSEIDQLYNQLVN 229
Cdd:pfam18833    1 PGSPLGELLGGRLPHPSETLKKLIDILEKEEKKEISKLISKERLKLGANLTQvQEVKLNSIAWSVYKDSELEELYEQLIN 80

                           90
                   ....*....|..
gi 768898667   230 ILADDQKRSEIE 241
Cdd:pfam18833   81 WTDDDELRRKYE 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
620-804 3.88e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 3.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  620 IKILDTFAPGFSTLGDIYcHYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELR 699
Cdd:COG0457     1 LELDPDDAEAYNNLGLAY-RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  700 SNnwpfrvVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAIS 779
Cdd:COG0457    80 NN------LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                         170       180
                  ....*....|....*....|....*
gi 768898667  780 LCDVGEYLESLDILEKVCQEAATEE 804
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAAL 178
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 412-836 2.97e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 2.97e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   412 TVLTENIvkckNNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIKDLGVHLPLTKREFSLDLATVY---------- 481
Cdd:TIGR02917  184 EVLTADP----GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHadallkkapn 259

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   482 ----TYVDA-----PKDHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSK 552
Cdd:TIGR02917  260 splaHYLKAlvdfqKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   553 AHMGYMDEALA------GLDTVIKGIkgMDLRSIDFRALNLWRQAKVYIMKhASINDAkqENVKCAFKLliqsikildtf 626
Cdd:TIGR02917  340 LRLGRVDEAIAtlspalGLDPDDPAA--LSLLGEAYLALGDFEKAAEYLAK-ATELDP--ENAAARTQL----------- 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   627 apGFSTLGDiychyyKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAElrsnnwPFR 706
Cdd:TIGR02917  404 --GISKLSQ------GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS------LHN 469

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   707 VVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEY 786
Cdd:TIGR02917  470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 768898667   787 LESLDILEKVCQEAATEESFQIGLVEVLMrcsldlySQGFLLKSVSIAKD 836
Cdd:TIGR02917  550 EEAVAWLEKAAELNPQEIEPALALAQYYL-------GKGQLKKALAILNE 592
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 423-570 1.42e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 1.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIkdlgvhlpltkrEFSLDLATVYtyvDAPKDHNAALKLYDNILS 502
Cdd:COG2956   108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA------------HAYCELAELY---LEQGDYDEAIEALEKALK 172

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768898667  503 GDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIK 570
Cdd:COG2956   173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 970-1068 9.32e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 9.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  970 AAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSL 1048
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLgRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100
                  ....*....|....*....|
gi 768898667 1049 APQDSSPWLGMALILEEQGD 1068
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGD 100
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 711-795 4.16e-07

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 53.40  E-value: 4.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  711 AHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDvGEylESL 790
Cdd:cd24142     9 ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLYLGQLSG-GE--EAL 85


                  ....*
gi 768898667  791 DILEK 795
Cdd:cd24142    86 QYYEK 90
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1018-1325 1.45e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1018 ATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGDIIGSSKLFAHSfILSNGRSKAAQFMYAkn 1097
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL-LERDPDRAEALLELA-- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1098 vlENHINNGDDERdietveklttASIALEQFFKKSPDNQFALQCALLTLERLHHYENANELANRLIGILEKKfektqder 1177
Cdd:COG2956    84 --QDYLKAGLLDR----------AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-------- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1178 elfnfAIIKGQFARIHLGLGNFELSIENadLSQGIiseSSDEKSMKTKISnhicLGLSYFFLNDFDQTLNQFQELLSISK 1257
Cdd:COG2956   144 -----AHAYCELAELYLEQGDYDEAIEA--LEKAL---KLDPDCARALLL----LAELYLEQGDYEEAIAALERALEQDP 209

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768898667 1258 DSKHLVVLIAKVLYDVGESDTkeiALQELTEYIATSGADLLVTLTIAAMSILDDKREDLSIILEELKA 1325
Cdd:COG2956   210 DYLPALPRLAELYEKLGDPEE---ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-87 1.16e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667    2 SDIKQLLKEAKQELTNRDYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNL 81
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL---------GDLDEAIVLLHEALELDPDEP 72


                  ....*.
gi 768898667   82 LAWKGL 87
Cdd:COG4783    73 EARLNL 78
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 703-767 1.43e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.15  E-value: 1.43e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768898667  703 WPFRVVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRP 767
Cdd:PRK11447  270 FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334
TPR_1 pfam00515
Tetratricopeptide repeat;
736-769 1.59e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.59e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 768898667   736 VESWVGLGQAYHACGRIEASIKVFDKAIQLRPSH 769
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 710-1269 2.23e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   710 IAHLEKQEEsDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLES 789
Cdd:TIGR02917  168 LALAENRFD-EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   790 ---LD-ILEKVCQEAATEesFQIGLVEvlmrcsldlYSQG-------FLLKSVSIAKDTIERIKII-ITELKCEN-QQVW 856
Cdd:TIGR02917  247 ekhADaLLKKAPNSPLAH--YLKALVD---------FQKKnyedareTLQDALKSAPEYLPALLLAgASEYQLGNlEQAY 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   857 IYLSQVLrlfiwieskvDTLPveslvsifensqfsgseeidsvDNIKIDTLLDST------TDDNVSIACKFLILASkys 930
Cdd:TIGR02917  316 QYLNQIL----------KYAP----------------------NSHQARRLLASIqlrlgrVDEAIATLSPALGLDP--- 360

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   931 vSDQKFTDIAGTvrasywynigiseltafITLKEPQYrDAAIFAFKKSIQLQSNTSETWIGLGIATMDINfRVSQHC--F 1008
Cdd:TIGR02917  361 -DDPAALSLLGE-----------------AYLALGDF-EKAAEYLAKATELDPENAAARTQLGISKLSQG-DPSEAIadL 420

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  1009 IKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGDIIGSSKLFAHSFILSNGRSK 1088
Cdd:TIGR02917  421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP 500

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  1089 AAQfmyakNVLENHINNGDDERDIETVEKLTTAsialeqffkkSPDNQFALQcALLTLERLHHYENANelanrlIGILEK 1168
Cdd:TIGR02917  501 AAA-----NLARIDIQEGNPDDAIQRFEKVLTI----------DPKNLRAIL-ALAGLYLRTGNEEEA------VAWLEK 558

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  1169 KFEKTQDERELfnfaiiKGQFARIHLGLGNFELSIENADLSQGIISESSDEKSMktkisnhicLGLSYFFLNDFDQTLNQ 1248
Cdd:TIGR02917  559 AAELNPQEIEP------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM---------LGRAQLAAGDLNKAVSS 623

                          570       580
                   ....*....|....*....|.
gi 768898667  1249 FQELLSISKDSKHLVVLIAKV 1269
Cdd:TIGR02917  624 FKKLLALQPDSALALLLLADA 644
TPR_19 pfam14559
Tetratricopeptide repeat;
488-544 4.13e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 4.13e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 768898667   488 KDHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEV 544
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
 
Name Accession Description Interval E-value
TPR_22 pfam18833
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 151-241 4.13e-28

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (two repeat units) that are not matched by pfam00515.


Pssm-ID: 436771  Cd Length: 92  Bit Score: 109.17  E-value: 4.13e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   151 PGSLMAETIGRHLSTPQDALLNLIKILSNIETTEIGKTLSQNRLKLKASDPD-YQIKLNSFSWEIIKNSEIDQLYNQLVN 229
Cdd:pfam18833    1 PGSPLGELLGGRLPHPSETLKKLIDILEKEEKKEISKLISKERLKLGANLTQvQEVKLNSIAWSVYKDSELEELYEQLIN 80

                           90
                   ....*....|..
gi 768898667   230 ILADDQKRSEIE 241
Cdd:pfam18833   81 WTDDDELRRKYE 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
620-804 3.88e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 3.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  620 IKILDTFAPGFSTLGDIYcHYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELR 699
Cdd:COG0457     1 LELDPDDAEAYNNLGLAY-RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  700 SNnwpfrvVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAIS 779
Cdd:COG0457    80 NN------LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                         170       180
                  ....*....|....*....|....*
gi 768898667  780 LCDVGEYLESLDILEKVCQEAATEE 804
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAAL 178
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 612-816 4.67e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 74.00  E-value: 4.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  612 AFKLLIQSIKILDTFAPGFSTLGDIYcHYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKG 691
Cdd:COG2956    61 AIRIHQKLLERDPDRAEALLELAQDY-LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  692 EKAKAELRSNnwpfrvVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTF 771
Cdd:COG2956   140 GPENAHAYCE------LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 768898667  772 AQYFKAISLCDVGEYLESLDILEKVCQEAAtEESFQIGLVEVLMR 816
Cdd:COG2956   214 ALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLER 257
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 687-796 4.48e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 64.64  E-value: 4.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  687 RLIKGEKAKAELRSNNWP-FRVVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQL 765
Cdd:COG4235     1 EAIARLRQALAANPNDAEgWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 768898667  766 RPSHTFAQYFKAISLCDVGEYLESLDILEKV 796
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 670-795 7.66e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.44  E-value: 7.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  670 ETYASKPNWQAASSIASRLIKGEKakaelrSNNWPFRVVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHAC 749
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 768898667  750 GRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESLDILEK 795
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 677-816 1.61e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 1.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  677 NWQAASSIASRLIKGEKAKAELRSNnwpfrvVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASI 756
Cdd:COG3914    93 RYEEALALYRRALALNPDNAEALFN------LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  757 KVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESLDILEKVCQEAATEESFQIGLVEVLMR 816
Cdd:COG3914   167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQ 226
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
709-800 1.84e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.63  E-value: 1.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  709 GIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLE 788
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                          90
                  ....*....|..
gi 768898667  789 SLDILEKVCQEA 800
Cdd:COG4785   160 AIADLEKALELD 171
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 651-796 6.03e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.20  E-value: 6.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  651 YFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELRSNNWPFRVVGIAHLEKQEESDSIEWFQSALR 730
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768898667  731 VDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESLDILEKV 796
Cdd:COG5010    83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
612-795 7.39e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.18  E-value: 7.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  612 AFKLLIQSIKILDTFAPGFSTLGDIYcHYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKG 691
Cdd:COG0457    27 AIEDYEKALELDPDDAEALYNLGLAY-LRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALEL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  692 EKAKAELRSNnwpfrvVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTF 771
Cdd:COG0457   106 DPDDAEALYN------LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179

                         170       180
                  ....*....|....*....|....
gi 768898667  772 AQYFKAISLCDVGEYLESLDILEK 795
Cdd:COG0457   180 AAALGEAALALAAAEVLLALLLAL 203
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 711-816 7.96e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 7.96e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  711 AHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESL 790
Cdd:COG3914    87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166

                          90       100
                  ....*....|....*....|....*.
gi 768898667  791 DILEKVCQEAATEESFQIGLVEVLMR 816
Cdd:COG3914   167 AALRRALELDPDNAEALNNLGNALQD 192
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 709-816 1.86e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 1.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  709 GIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLE 788
Cdd:COG4783    11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                          90       100
                  ....*....|....*....|....*...
gi 768898667  789 SLDILEKVCQEAATEESFQIGLVEVLMR 816
Cdd:COG4783    91 ALALLEKALKLDPEHPEAYLRLARAYRA 118
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 412-836 2.97e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 2.97e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   412 TVLTENIvkckNNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIKDLGVHLPLTKREFSLDLATVY---------- 481
Cdd:TIGR02917  184 EVLTADP----GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHadallkkapn 259

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   482 ----TYVDA-----PKDHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSK 552
Cdd:TIGR02917  260 splaHYLKAlvdfqKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   553 AHMGYMDEALA------GLDTVIKGIkgMDLRSIDFRALNLWRQAKVYIMKhASINDAkqENVKCAFKLliqsikildtf 626
Cdd:TIGR02917  340 LRLGRVDEAIAtlspalGLDPDDPAA--LSLLGEAYLALGDFEKAAEYLAK-ATELDP--ENAAARTQL----------- 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   627 apGFSTLGDiychyyKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAElrsnnwPFR 706
Cdd:TIGR02917  404 --GISKLSQ------GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS------LHN 469

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   707 VVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEY 786
Cdd:TIGR02917  470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 768898667   787 LESLDILEKVCQEAATEESFQIGLVEVLMrcsldlySQGFLLKSVSIAKD 836
Cdd:TIGR02917  550 EEAVAWLEKAAELNPQEIEPALALAQYYL-------GKGQLKKALAILNE 592
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
711-796 3.16e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.56  E-value: 3.16e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  711 AHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKvFDKAIQLRPSHTFAQYFKAISLCDVGEYLESL 790
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                  ....*.
gi 768898667  791 DILEKV 796
Cdd:COG3063    80 AYLERA 85
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 423-570 1.42e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 1.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIkdlgvhlpltkrEFSLDLATVYtyvDAPKDHNAALKLYDNILS 502
Cdd:COG2956   108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA------------HAYCELAELY---LEQGDYDEAIEALEKALK 172

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768898667  503 GDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIK 570
Cdd:COG2956   173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
672-772 2.23e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.46  E-value: 2.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  672 YASKPNWQAASSIASRLIKGEKAKAELRSNnwpfRvvGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGR 751
Cdd:COG4785    83 YDSLGDYDLAIADFDQALELDPDLAEAYNN----R--GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156

                          90       100
                  ....*....|....*....|.
gi 768898667  752 IEASIKVFDKAIQLRPSHTFA 772
Cdd:COG4785   157 YELAIADLEKALELDPNDPER 177
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 970-1068 9.32e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 9.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  970 AAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSL 1048
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLgRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100
                  ....*....|....*....|
gi 768898667 1049 APQDSSPWLGMALILEEQGD 1068
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGD 100
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
945-1068 1.10e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 1.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  945 ASYWYNIGIseltAFITLKEPqyrDAAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWF 1023
Cdd:COG0457     8 AEAYNNLGL----AYRRLGRY---EEAIEDYEKALELDPDDAEALYNLGLAYLRLgRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 768898667 1024 NLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGD 1068
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 636-769 1.94e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 1.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  636 IYCHYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELRSNnwpfrvVGIAHLEK 715
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN------LGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 768898667  716 QEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSH 769
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
945-1069 2.05e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 2.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  945 ASYWYNIGIseltAFITLKEPqyrDAAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWF 1023
Cdd:COG0457    42 AEALYNLGL----AYLRLGRY---EEALADYEQALELDPDDAEALNNLGLALQALgRYEEALEDYDKALELDPDDAEALY 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 768898667 1024 NLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGDI 1069
Cdd:COG0457   115 NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 488-570 3.05e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 3.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  488 KDHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDT 567
Cdd:COG4783    18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97


                  ...
gi 768898667  568 VIK 570
Cdd:COG4783    98 ALK 100
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 711-795 4.16e-07

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 53.40  E-value: 4.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  711 AHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDvGEylESL 790
Cdd:cd24142     9 ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLYLGQLSG-GE--EAL 85


                  ....*
gi 768898667  791 DILEK 795
Cdd:cd24142    86 QYYEK 90
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 709-816 5.65e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 5.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  709 GIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLE 788
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                          90       100
                  ....*....|....*....|....*...
gi 768898667  789 SLDILEKVCQEAATEESFQIGLVEVLMR 816
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQ 122
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 423-690 5.91e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 5.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNgisLIAYNIKDLGVHLPLTKrefsldlatvyTYVDApKDHNAALKLYDNILS 502
Cdd:COG2956    40 ETVEAHLALGNLYRRRGEYDRAIRIHQK---LLERDPDRAEALLELAQ-----------DYLKA-GLLDRAEELLEKLLE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  503 GDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIKGIKGmdlrsiDF 582
Cdd:COG2956   105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD------CA 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  583 RALNLwrQAKVYImkhasindaKQENVKCAFKLLIQSIKILDTFAPGFSTLGDIYCHyYKDHLRAFKCYFKAFDLDAGDy 662
Cdd:COG2956   179 RALLL--LAELYL---------EQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPSD- 245

                         250       260
                  ....*....|....*....|....*...
gi 768898667  663 TAAKYITETYASKPNWQAASSIASRLIK 690
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1018-1325 1.45e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1018 ATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGDIIGSSKLFAHSfILSNGRSKAAQFMYAkn 1097
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL-LERDPDRAEALLELA-- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1098 vlENHINNGDDERdietveklttASIALEQFFKKSPDNQFALQCALLTLERLHHYENANELANRLIGILEKKfektqder 1177
Cdd:COG2956    84 --QDYLKAGLLDR----------AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-------- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1178 elfnfAIIKGQFARIHLGLGNFELSIENadLSQGIiseSSDEKSMKTKISnhicLGLSYFFLNDFDQTLNQFQELLSISK 1257
Cdd:COG2956   144 -----AHAYCELAELYLEQGDYDEAIEA--LEKAL---KLDPDCARALLL----LAELYLEQGDYEEAIAALERALEQDP 209

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768898667 1258 DSKHLVVLIAKVLYDVGESDTkeiALQELTEYIATSGADLLVTLTIAAMSILDDKREDLSIILEELKA 1325
Cdd:COG2956   210 DYLPALPRLAELYEKLGDPEE---ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 969-1065 3.72e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  969 DAAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQS 1047
Cdd:COG4235    34 DEALAAYEKALRLDPDNADALLDLAEALLAAgDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113

                          90
                  ....*....|....*...
gi 768898667 1048 LAPQDsSPWLGMALILEE 1065
Cdd:COG4235   114 LLPAD-APARLLEASIAE 130
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 969-1069 4.25e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.15  E-value: 4.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  969 DAAIFAFKKSIQLQSNTSETWIGLGIATMDINFRVS-QHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQS 1047
Cdd:COG3914    95 EEALALYRRALALNPDNAEALFNLGNLLLALGRLEEaLAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174

                          90       100
                  ....*....|....*....|..
gi 768898667 1048 LAPQDSSPWLGMALILEEQGDI 1069
Cdd:COG3914   175 LDPDNAEALNNLGNALQDLGRL 196
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-769 9.34e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 9.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667     7 LLKEAKQELTNRDYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNLLAwkg 86
Cdd:TIGR02917  162 KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL---------GNIELALAAYRKAIALRPNNIAV--- 229

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667    87 lfLLFRTTevvpdILSYDEYFDLCGQYADALLKQ--EQSQVELIND-IKLLKKTHPDCQKAFYQHLK------PGSLMAE 157
Cdd:TIGR02917  230 --LLALAT-----ILIEAGEFEEAEKHADALLKKapNSPLAHYLKAlVDFQKKNYEDARETLQDALKsapeylPALLLAG 302

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   158 TIGRHLSTPQDALLNLIKILSNIETT-EIGKTLSQNRLKLK-------------ASDPDYQIKLNSFSWEIIKNSEIDQL 223
Cdd:TIGR02917  303 ASEYQLGNLEQAYQYLNQILKYAPNShQARRLLASIQLRLGrvdeaiatlspalGLDPDDPAALSLLGEAYLALGDFEKA 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   224 YNQLvniladdQKRSEI--ENQWLEYRIKVLKSMPLDVKK---DFFTKVKemVEDMVLVNHQSLLawqkyfewTDYEDLD 298
Cdd:TIGR02917  383 AEYL-------AKATELdpENAAARTQLGISKLSQGDPSEaiaDLETAAQ--LDPELGRADLLLI--------LSYLRSG 445

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   299 NMDAPLII--KYFKKFPKDPLAMIL--YSWLSSKLSKYDIKSLESANKPPEGHKKTEKETDIKDVDETNEDEVKDRVEDe 374
Cdd:TIGR02917  446 QFDKALAAakKLEKKQPDNASLHNLlgAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK- 524

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   375 vkdrvedevkdqdeeakedeeedlddieiglleeevvtVLTENivkcKNNILAHRILCQYYLLTKEYEAALPYIKNGISL 454
Cdd:TIGR02917  525 --------------------------------------VLTID----PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   455 IAYNI---KDLGVHLpLTKREFSLDLATVYTYVDAPKDHNAALKLydnilsgdfsniqakmgKGIIFIERKNWKDAMTLL 531
Cdd:TIGR02917  563 NPQEIepaLALAQYY-LGKGQLKKALAILNEAADAAPDSPEAWLM-----------------LGRAQLAAGDLNKAVSSF 624

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   532 TQVHEQSPNNLEVLSELSWSKAHMGYMDEALagldTVIKgiKGMDLRSIDFRALnlwrqakvyIMKHASINDAKQenVKC 611
Cdd:TIGR02917  625 KKLLALQPDSALALLLLADAYAVMKNYAKAI----TSLK--RALELKPDNTEAQ---------IGLAQLLLAAKR--TES 687

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   612 AFKLL--IQSIKILDtfAPGFSTLGDIYchyykdhlrafkcyfkafdLDAGDYTAA-KYITETYASKPNWQAASSIASRL 688
Cdd:TIGR02917  688 AKKIAksLQKQHPKA--ALGFELEGDLY-------------------LRQKDYPAAiQAYRKALKRAPSSQNAIKLHRAL 746

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   689 IK-GEKAKAELRSNNWpfrvvgiahlekqeesdsiewfqsaLRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRP 767
Cdd:TIGR02917  747 LAsGNTAEAVKTLEAW-------------------------LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801


                   ..
gi 768898667   768 SH 769
Cdd:TIGR02917  802 DN 803
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1007-1068 1.04e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768898667 1007 CFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGD 1068
Cdd:COG5010    76 LLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
423-591 1.68e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.08  E-value: 1.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNGISLiayNIKDLGVHLpltkrefslDLATVYTYVdapKDHNAALKLYDNILS 502
Cdd:COG0457    40 DDAEALYNLGLAYLRLGRYEEALADYEQALEL---DPDDAEALN---------NLGLALQAL---GRYEEALEDYDKALE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  503 GDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIKGIKGMDLRSIDF 582
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALG 184


                  ....*....
gi 768898667  583 RALNLWRQA 591
Cdd:COG0457   185 EAALALAAA 193
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 969-1183 3.27e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 3.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  969 DAAIFAFKKSIQLQSNTSETWIGLGIATMDINFRV-SQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQS 1047
Cdd:COG2956    59 DRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDrAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1048 LAPQDSSPWLGMALILEEQGDIIGSSKLFAHSFILsNGRSKAAQFMYAknvlENHINNGDDERDIEtveklttasiALEQ 1127
Cdd:COG2956   139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKL-DPDCARALLLLA----ELYLEQGDYEEAIA----------ALER 203

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 768898667 1128 FFKKSPDNQFALQCALLTLERLHHYENANELanrligiLEKKFEKTQDERELFNFA 1183
Cdd:COG2956   204 ALEQDPDYLPALPRLAELYEKLGDPEEALEL-------LRKALELDPSDDLLLALA 252
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 653-767 3.50e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 3.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  653 KAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKA------ELRSNNWPFRV-VGIAHLEKQEESDSIEWF 725
Cdd:COG5010    32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLAlleqalQLDPNNPELYYnLALLYSRSGDKDEAKEYY 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 768898667  726 QSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRP 767
Cdd:COG5010   112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 653-767 4.09e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 4.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  653 KAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELRSNnwpfrvVGIAHLEKQEESDSIEWFQSALRVD 732
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLD------LAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 768898667  733 PNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRP 767
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
692-768 5.09e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 5.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  692 EKAKAELR-------SNNWPFRVVGIAHLEKQEESDSIEwFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQ 764
Cdd:COG3063     9 EEAEEYYEkaleldpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALE 87


                  ....
gi 768898667  765 LRPS 768
Cdd:COG3063    88 LDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
423-570 5.12e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 5.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNGISL-----IAYNikdlgvhlpltkrefslDLATVYTYVdapKDHNAALKLY 497
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELdpddaEALY-----------------NLGLAYLRL---GRYEEALADY 65

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768898667  498 DNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIK 570
Cdd:COG0457    66 EQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-87 1.16e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667    2 SDIKQLLKEAKQELTNRDYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNL 81
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL---------GDLDEAIVLLHEALELDPDEP 72


                  ....*.
gi 768898667   82 LAWKGL 87
Cdd:COG4783    73 EARLNL 78
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 433-570 1.42e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 1.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  433 QYYLLTKEYEAALPYIKNGISLIAYNIkdlgvhlpltkrEFSLDLATVYTYVdapKDHNAALKLYDNILSGDFSNIQAKM 512
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDPDNP------------EAFALLGEILLQL---GDLDEAIVLLHEALELDPDEPEARL 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 768898667  513 GKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIK 570
Cdd:COG4783    77 NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 426-570 2.28e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  426 LAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIKDLGVHLPLTKREFSLDLATVYTYVDApKDHNAALKLYDNILSGDF 505
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKL-GDFEESLALLEQALQLDP 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768898667  506 SNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIK 570
Cdd:COG5010    86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
945-1052 2.45e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 2.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  945 ASYWYNIGIseltAFITLKEPqyrDAAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWF 1023
Cdd:COG0457    76 AEALNNLGL----ALQALGRY---EEALEDYDKALELDPDDAEALYNLGLALLELgRYDEAIEAYERALELDPDDADALY 148

                          90       100
                  ....*....|....*....|....*....
gi 768898667 1024 NLAMLGLKKKDTEFAQQVLNKLQSLAPQD 1052
Cdd:COG0457   149 NLGIALEKLGRYEEALELLEKLEAAALAA 177
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 710-799 2.51e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 2.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  710 IAHLEKQEESDSIEWFQSALRVDPNDV---ESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTF---AQYFKAISLCDV 783
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80

                          90
                  ....*....|....*.
gi 768898667  784 GEYLESLDILEKVCQE 799
Cdd:COG1729    81 GDYDKARATLEELIKK 96
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-117 2.51e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 2.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   19 DYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNLLAWKGL-FLLFRTTEVV 97
Cdd:COG3914   127 RLEEALAALRRALALNPDFAEAYLNLGEALRRL---------GRLEEAIAALRRALELDPDNAEALNNLgNALQDLGRLE 197

                          90       100
                  ....*....|....*....|
gi 768898667   98 PDILSYDEYFDLCGQYADAL 117
Cdd:COG3914   198 EAIAAYRRALELDPDNADAH 217
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
969-1050 2.86e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 2.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  969 DAAIFAFKKSIQLQSNTSETWIGLGIATMDINFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSL 1048
Cdd:COG3063     9 EEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALEL 88


                  ..
gi 768898667 1049 AP 1050
Cdd:COG3063    89 DP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 969-1050 2.94e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 2.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  969 DAAIFAFKKSIQLQSNTSETWIGLGIATMDI-NFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQS 1047
Cdd:COG5010    71 EESLALLEQALQLDPNNPELYYNLALLYSRSgDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150


                  ...
gi 768898667 1048 LAP 1050
Cdd:COG5010   151 TSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 408-801 3.85e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 3.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   408 EEVVTVLTENIVKCKNNILAHRILCQYYLLTKEYEAALPYIkngISLIAYNIKDLGVHLPLTKREFSL-DLATVYTYVD- 485
Cdd:TIGR02917  244 EEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL---QDALKSAPEYLPALLLAGASEYQLgNLEQAYQYLNq 320

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   486 ----APKDHNAALKLYDNIL-SGDFSNIQAKMGK---------------GIIFIERKNWKDAMTLLTQVHEQSPNNLEVL 545
Cdd:TIGR02917  321 ilkyAPNSHQARRLLASIQLrLGRVDEAIATLSPalgldpddpaalsllGEAYLALGDFEKAAEYLAKATELDPENAAAR 400

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   546 SELSWSKAHMGYMDEALAGLDTVIK------------GIKGMDLRSID--FRALNLWR-----QAKVYIMKhASINDAKQ 606
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQldpelgradlllILSYLRSGQFDkaLAAAKKLEkkqpdNASLHNLL-GAIYLGKG 479

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   607 ENVKcAFKLLIQSIKILDTFAPGFSTLGDIYCH----------------YYKDHLRAFKCYF-----------------K 653
Cdd:TIGR02917  480 DLAK-AREAFEKALSIEPDFFPAAANLARIDIQegnpddaiqrfekvltIDPKNLRAILALAglylrtgneeeavawleK 558

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   654 AFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELrsnnwpFRVVGIAHLEKQEESDSIEWFQSALRVDP 733
Cdd:TIGR02917  559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA------WLMLGRAQLAAGDLNKAVSSFKKLLALQP 632

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768898667   734 NDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESLDI---LEKVCQEAA 801
Cdd:TIGR02917  633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIaksLQKQHPKAA 703
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 423-541 4.48e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 4.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIKDLgvhlpltkrefsLDLATVYTYVDapkDHNAALKLYDNILS 502
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADAL------------LDLAEALLAAG---DTEEAEELLERALA 79

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 768898667  503 GDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNN 541
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-149 4.83e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 4.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667    1 MSDIKQLLKEAKQELTNRDYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDN 80
Cdd:COG3914    75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL---------GRLEEALAALRRALALNPDF 145

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768898667   81 LLAWKGLFLLFRTTEVVPD-ILSYDEYFDLCGQYADAL------LKQEQSQVELINDIKLLKKTHPDCQKAFYQHL 149
Cdd:COG3914   146 AEAYLNLGEALRRLGRLEEaIAALRRALELDPDNAEALnnlgnaLQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 489-570 5.13e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 5.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  489 DHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTV 568
Cdd:COG4235    32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111


                  ..
gi 768898667  569 IK 570
Cdd:COG4235   112 LA 113
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 735-816 6.28e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 6.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  735 DVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESLDILEKVCQEAATEESFQIGLVEVL 814
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82


                  ..
gi 768898667  815 MR 816
Cdd:COG4783    83 LK 84
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
915-1068 6.88e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.98  E-value: 6.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  915 NVSIACKFLILASKYSVSDQKFTDIAGTVRASYWYNIGIseltAFITLKEpqyRDAAIFAFKKSIQLQSNTSETWIGLGI 994
Cdd:COG4785    43 DLALALAAAALAAAALAAERIDRALALPDLAQLYYERGV----AYDSLGD---YDLAIADFDQALELDPDLAEAYNNRGL 115

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768898667  995 A-TMDINFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGD 1068
Cdd:COG4785   116 AyLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP 190
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 426-563 7.28e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 7.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   426 LAHRILCQYYLLTKEYEAALPYIKNGISLIAYnikdlgvhlpltkrefSLDLATVYTYVDAPKDHNAALKLYDNILSGDF 505
Cdd:TIGR02917  704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPS----------------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHP 767

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 768898667   506 SNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSkAHMGYMDEALA 563
Cdd:TIGR02917  768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL-YLELKDPRALE 824
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 945-1092 9.96e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.44  E-value: 9.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  945 ASYWYNIGIseltafiTLKEPQYRDAAIFAFKKSIQLQSNTSETWIGLGIATMDINfRVSQ--HCFIKATALEPKATNTW 1022
Cdd:COG3914   112 AEALFNLGN-------LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG-RLEEaiAALRRALELDPDNAEAL 183

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667 1023 FNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGDIIGSSKLFAHSFILSNGRSKAAQF 1092
Cdd:COG3914   184 NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 703-767 1.43e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.15  E-value: 1.43e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768898667  703 WPFRVVGIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRP 767
Cdd:PRK11447  270 FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334
TPR_1 pfam00515
Tetratricopeptide repeat;
736-769 1.59e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.59e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 768898667   736 VESWVGLGQAYHACGRIEASIKVFDKAIQLRPSH 769
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 711-816 2.21e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  711 AHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESL 790
Cdd:COG5010    29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                          90       100
                  ....*....|....*....|....*.
gi 768898667  791 DILEKVCQEAATEESFQIGLVEVLMR 816
Cdd:COG5010   109 EYYEKALALSPDNPNAYSNLAALLLS 134
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 710-1269 2.23e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   710 IAHLEKQEEsDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLES 789
Cdd:TIGR02917  168 LALAENRFD-EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   790 ---LD-ILEKVCQEAATEesFQIGLVEvlmrcsldlYSQG-------FLLKSVSIAKDTIERIKII-ITELKCEN-QQVW 856
Cdd:TIGR02917  247 ekhADaLLKKAPNSPLAH--YLKALVD---------FQKKnyedareTLQDALKSAPEYLPALLLAgASEYQLGNlEQAY 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   857 IYLSQVLrlfiwieskvDTLPveslvsifensqfsgseeidsvDNIKIDTLLDST------TDDNVSIACKFLILASkys 930
Cdd:TIGR02917  316 QYLNQIL----------KYAP----------------------NSHQARRLLASIqlrlgrVDEAIATLSPALGLDP--- 360

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   931 vSDQKFTDIAGTvrasywynigiseltafITLKEPQYrDAAIFAFKKSIQLQSNTSETWIGLGIATMDINfRVSQHC--F 1008
Cdd:TIGR02917  361 -DDPAALSLLGE-----------------AYLALGDF-EKAAEYLAKATELDPENAAARTQLGISKLSQG-DPSEAIadL 420

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  1009 IKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLGMALILEEQGDIIGSSKLFAHSFILSNGRSK 1088
Cdd:TIGR02917  421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP 500

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  1089 AAQfmyakNVLENHINNGDDERDIETVEKLTTAsialeqffkkSPDNQFALQcALLTLERLHHYENANelanrlIGILEK 1168
Cdd:TIGR02917  501 AAA-----NLARIDIQEGNPDDAIQRFEKVLTI----------DPKNLRAIL-ALAGLYLRTGNEEEA------VAWLEK 558

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  1169 KFEKTQDERELfnfaiiKGQFARIHLGLGNFELSIENADLSQGIISESSDEKSMktkisnhicLGLSYFFLNDFDQTLNQ 1248
Cdd:TIGR02917  559 AAELNPQEIEP------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM---------LGRAQLAAGDLNKAVSS 623

                          570       580
                   ....*....|....*....|.
gi 768898667  1249 FQELLSISKDSKHLVVLIAKV 1269
Cdd:TIGR02917  624 FKKLLALQPDSALALLLLADA 644
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 509-661 2.35e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  509 QAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDtvikgiKGMDLRSIDFRALNLW 588
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLH------EALELDPDEPEARLNL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768898667  589 rqAKVYimkhasindAKQENVKCAFKLLIQSIKILDTFAPGFSTLGDIYcHYYKDHLRAFKCYFKAFDLDAGD 661
Cdd:COG4783    79 --GLAL---------LKAGDYDEALALLEKALKLDPEHPEAYLRLARAY-RALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1000-1068 2.38e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 2.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768898667 1000 NFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQvLNKLQSLAPQDSSPWLGMALILEEQGD 1068
Cdd:COG3063     7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD 74
TPR_8 pfam13181
Tetratricopeptide repeat;
736-768 3.09e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.61  E-value: 3.09e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768898667   736 VESWVGLGQAYHACGRIEASIKVFDKAIQLRPS 768
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 423-563 3.14e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.90  E-value: 3.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNgisLIAYNIKDLGVHLpltkrefslDLATVYTYVdapKDHNAALKLYDNILS 502
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRR---ALALNPDNAEALF---------NLGNLLLAL---GRLEEALAALRRALA 140

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768898667  503 GDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALA 563
Cdd:COG3914   141 LNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
488-570 3.99e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 3.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  488 KDHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLlTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDT 567
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ...
gi 768898667  568 VIK 570
Cdd:COG3063    85 ALE 87
TPR_19 pfam14559
Tetratricopeptide repeat;
488-544 4.13e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 4.13e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 768898667   488 KDHNAALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEV 544
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
19-136 5.40e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667   19 DYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNLLAWKGL-FLLFRTTEVV 97
Cdd:COG0457    91 RYEEALEDYDKALELDPDDAEALYNLGLALLEL---------GRYDEAIEAYERALELDPDDADALYNLgIALEKLGRYE 161

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 768898667   98 PDILSYDEYFDLCGQYADALLKQEQSQVELINDIKLLKK 136
Cdd:COG0457   162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 19-92 5.89e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 5.89e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768898667   19 DYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNLLAWKGLFLLFR 92
Cdd:COG5010    69 DFEESLALLEQALQLDPNNPELYYNLALLYSRS---------GDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
TPR_11 pfam13414
TPR repeat;
709-750 6.08e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.91  E-value: 6.08e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 768898667   709 GIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACG 750
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
732-796 6.71e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.90  E-value: 6.71e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768898667  732 DPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAISLCDVGEYLESLDILEKV 796
Cdd:COG4785    69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRA 133
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
19-87 7.26e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 7.26e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768898667   19 DYEETIEISEKVLKLDPDNYFAHIFLGKALSSLpasnnvssnRNLERATNHYVSAAKLVPDNLLAWKGL 87
Cdd:COG0457    23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRL---------GRYEEALADYEQALELDPDDAEALNNL 82
TPR_19 pfam14559
Tetratricopeptide repeat;
522-570 7.91e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.41  E-value: 7.91e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 768898667   522 KNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEALAGLDTVIK 570
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPA 50
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 969-1052 8.91e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 8.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  969 DAAIFAFKKSIQLQSNTSETWIGLGIATMDIN-FRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQS 1047
Cdd:COG4783    55 DEAIVLLHEALELDPDEPEARLNLGLALLKAGdYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134


                  ....*
gi 768898667 1048 LAPQD 1052
Cdd:COG4783   135 LDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 423-541 9.80e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.86  E-value: 9.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768898667  423 NNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNikdlgvhlpltkREFSLDLATVYTYVdapKDHNAALKLYDNILS 502
Cdd:COG4783    36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE------------PEARLNLGLALLKA---GDYDEALALLEKALK 100

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 768898667  503 GDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNN 541
Cdd:COG4783   101 LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH