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Conserved domains on  [gi|768700466|gb|AJV26398|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Anthus ruficollis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.26e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 464.30  E-value: 4.26e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700466 321 TPILIAILTTMSITLLPMAPMITTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.26e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 464.30  E-value: 4.26e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700466 321 TPILIAILTTMSITLLPMAPMITTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.39e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.39e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   91 HPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLIL-STAMKLPPITLLYMTSPSLNPT-----FLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  165 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYSLMTATVFLTMNS-----MKVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 768700466  236 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.03e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.35  E-value: 1.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  92 PAS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 154 -LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YSLMTATVFLTMNSMK----- 223
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700466 224 VLNLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.88e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 1.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   93 ASCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YSLMTATVFLTMNSMKVLN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700466  227 ---LSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.26e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 464.30  E-value: 4.26e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700466 321 TPILIAILTTMSITLLPMAPMITTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 4.45e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 393.02  E-value: 4.45e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSlNPTFLTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 768700466 321 TPIL-IAILTTMSITLLPMAPMITTII 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.19e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 384.27  E-value: 1.19e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700466 321 TPILIAILTTMSITLLPMAPMITTII 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 4.48e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 339.90  E-value: 4.48e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*..
gi 768700466 319 KPTPILIAILTTMSITLLPMAPMITTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.05e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 290.33  E-value: 1.05e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 768700466 321 TPILIAILTTMSITLLPMAPMITTII 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 1.98e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 249.08  E-value: 1.98e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 TGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 768700466 321 TPILIAILTTMSITLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 2.62e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.18  E-value: 2.62e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   1 MNPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  81 tgqwdITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTspsLNPTFLTTMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 768700466 321 TPILIaILTTMSITLLPMAPMITTI 345
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.23e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.13  E-value: 1.23e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   5 AKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  85 DITqlthpascLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNP-TFLTTMAILSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLmtAWTKVPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 244 LLLTLLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144 235 SIISLLLSLGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 3.20e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.55  E-value: 3.20e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   7 LIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  87 TQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAILSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 167 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTLMTAWTKVPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYcTTITLPPHTTNhmkqwHTNKPTPILIA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                        330
                 ....*....|....
gi 768700466 327 ILTTMSITLLPMAP 340
Cdd:MTH00011 317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 3.12e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 133.26  E-value: 3.12e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   8 IFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  88 qLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLymTSPSLNPTFLTTMAILSTALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 168 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYSLMTATVFLTMNSMKVLNLSTlMTAWTKVPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTItlppHTTNHMKQWHTNKPTPILIA 326
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                        330
                 ....*....|....*.
gi 768700466 327 ILTTMSITLLPMAPMI 342
Cdd:MTH00197 308 ILLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.39e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 1.39e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   91 HPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLIL-STAMKLPPITLLYMTSPSLNPT-----FLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  165 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYSLMTATVFLTMNS-----MKVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 768700466  236 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 8.70e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.49  E-value: 8.70e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  79 WHTGQWDITQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNptFLTTMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNP----KLTLLNFYLYSLMTATVF---LTMNSMK--VLNLST 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 768700466 230 LMtawTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.03e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.35  E-value: 1.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  92 PAS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 154 -LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YSLMTATVFLTMNSMK----- 223
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700466 224 VLNLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 2.03e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 100.67  E-value: 2.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVL--------------FSSMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  79 WHTGQWDITQLThpASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKL----PPITLLYMTSPSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 153 -FLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTL--LNFYL--YSLMTATVFLTMNSMK---- 223
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkgg 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700466 224 -VLNLSTL-MTAWTKvPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRL 296
Cdd:PRK05777 351 eAESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.88e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 1.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   93 ASCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YSLMTATVFLTMNSMKVLN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700466  227 ---LSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 4.28e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 87.76  E-value: 4.28e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   8 IFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  87 ----TQLTHPASCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTtmAILST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 163 ALGGWMGLNQTQIRKILAFSSISHLG---WMTIIISYNP-KLTLLNFYLYSLMTATVF---LTMNSMKVLnLSTLMTAWT 235
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSR 337

                        250       260       270
                 ....*....|....*....|....*....|..
gi 768700466 236 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 1.82e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.72  E-value: 1.82e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  93 AS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAM-KLPP------ITLLYMTSPSLNP-TFL 154
Cdd:COG0651  196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 155 TTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----SLMTATVFLTMNSMKVL----N 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 768700466 227 LSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAI 282
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 5.97e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.58  E-value: 5.97e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   3 PQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  74 SMTNAWHTGQWDITQLTHPASC--------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPI 139
Cdd:MTH00198 267 CALYFGFTGNEGMLGTILSATLettnielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 140 TLLymTSPSLNPTFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYS---LMTATVF 216
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALAS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768700466 217 LTM----------------------NSMKVLNLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 1.37e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 71.57  E-value: 1.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   7 LIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLVL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  82 GQWDI------TQLTHPASCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPL-----------TTGLILSTAMklppIT 140
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI----FD 269

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700466 141 LLYMTSPSLNPTFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK------LTLLNFYLY 208
Cdd:CHL00049 270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 5.37e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 66.61  E-value: 5.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  50 PRAIEAATKYFLVQAAASTLVLF-SSMTNAWHTGQwdiTQLTHPASCLI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 116 PEVLQGSPLTTGLILSTAMKLP----PITLLYMTSPSLNP---TFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 768700466 189 WMTI 192
Cdd:PRK02504 314 FVMI 317
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.71e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 1.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSmtnAWHTGQWDITQLTHPASCL-------------IL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  99 TSAIAMKLGLVPFHFWFPEVLQGSP--LTTGLILSTAMKLPPI--TLLYMTSPSLNPTFL----TTMAILSTALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLATVgwviIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 171 NQTQIRKILAFSSISHLGWMTI-----IISY-NPKLT----------LLNFYLYSLMTATVFLT----MNSMKVLNLSTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 768700466 231 MTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-198 4.20e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.78  E-value: 4.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  49 HPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW--DITQLTH-----PASCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 119 LQGSPLTTGLILSTAMK-----------LP--PITLLYMTspslnpTFLTTMAILSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:COG1008  236 HVEAPTAGSVLLAGVLLkmggygllrfaLPlfPEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309

                        170
                 ....*....|....
gi 768700466 186 HLGWMTI-IISYNP 198
Cdd:COG1008  310 HMGFVLLgIFALNP 323
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 3.56e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 49.18  E-value: 3.56e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 768700466  291 FFYLRLAYCTTITLPPHTTNHMKQWHTNKPTPI-LIAILTTMSITLLPMAP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-192 5.42e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 54.39  E-value: 5.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   7 LIFITSLLLgttITMSSNHWIMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWD 85
Cdd:COG1009  118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  86 ITQLTH------------PASCLILTSAIAmKLGLVPFHFWFPEVLQG-SPLTTgLILSTAMKLPPITLLYMTSP--SLN 150
Cdd:COG1009  194 FSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALS 271

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 768700466 151 PTFLTTMAI--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:COG1009  272 PVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 6.16e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 6.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-SMTNAwHTGQWDITQLTH--PASCLILT------SAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 104 MKLGLVPFHFWFPEVLQG-SPLTTGLILSTAMKLPP----------ITLLYMTSPSLNpTFLTTMAILSTALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 173 TQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YSLMTATVFLTMNSMKVL----NLSTLMTAWTKVPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 768700466 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-218 6.77e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.91  E-value: 6.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  87 TQLTHPA----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPT---- 152
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700466 153 ----FLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKL----TLLNFYLYSLMTATVFLT 218
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLalfwMLFHMLAHSLVKSGLFFS 344
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 7.90e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.77  E-value: 7.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   2 NPQAKLIFITSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASTLVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  82 GQWDIT-------QLTHPASCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTA----------------- 133
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQlsklgaygfllvlyvlp 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 134 -MKLPPITLLYMTSPSLNPTFLTTMAIlSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTL-------LNF 205
Cdd:PRK08668 255 gTKLFSEFGTYRGVPLFNYILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNH 333

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700466 206 YLYS----LMTATVFLTMNSMKVLNLSTLmtAWtKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668 334 ALFKglffLIFAAVIYRTGTTKISEMGGL--IE-KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-198 9.83e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.32  E-value: 9.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   50 PRAIEAATKYFLVQAAASTLVLFSSMTNAW-HTGQWDITQL-THPASC-------LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  121 GSPLTTGLILS-TAMKLPPITLLYMTSPSLNPT---FLTTMAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWMTI- 192
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFNLPLFPDAslyFAPVLAALGVIaiiYGALIALAQTDIKRLIAYSSISHMGFVLLg 311


                  ....*.
gi 768700466  193 IISYNP 198
Cdd:TIGR01972 312 IFSFNE 317
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 1.69e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.92  E-value: 1.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLL------YMTSPSLNPTFLTtMAILSTALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                         90       100
                 ....*....|....*....|....*
gi 768700466 170 LNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 3.17e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 3.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466   8 IFITSLLLgttiTMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYF---------------LVQAAASTLVLF 72
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  73 SSMTNAW-----HTGQWDiTQLTHPASCLILTsAIAMKLGLVPFHFWFPEVLQGSP-----LTTGLILSTAMkLPPITLL 142
Cdd:PRK06458 192 GEMAILWtellkHASLLD-PTLMKLAFVFLLI-GFGTKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLRYY 268

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 768700466 143 YMTSPSLNPTF----LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:PRK06458 269 ILIDAAIGSDFpgrlLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 3.21e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.58  E-value: 3.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-----SMTNAWHTGqwDITQLTHP--------ASCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 100 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITL------------LYMTSPSLNPTFLTtMAILSTALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 168 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----SLMTATVFLTMNSMK----VLNLSTLMTAWTKVPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 768700466 240 LNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 5.11e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 5.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  50 PRAIEAATKYFLVQAAASTLVLFSSMTNAWH----TGQWDITQL------THPASCLILT--SAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlnlplpPGVQYWLFLAffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 118 VLQGSPLTTGLILSTAM-KLPPITLLYMTSPsLNP-------TFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 768700466 190 MTIII 194
Cdd:PRK05846 316 VTLGI 320
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-188 1.28e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.95  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  59 YFLVQAAASTLVLFSSMTNAW-HTGQWDITQLTHPA-----SCLILTSAIAMKLGLVPFHFWFPEVLQGSP-----LTTG 127
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768700466 128 LILSTAMKLPPITLLYMTSPSLNPTFLT-TMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667 246 VMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 2.46e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 2.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  55 AATKYFLVQAAASTLVLFSSMTNAWHTGQWDI---TQLTHP---ASCLILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTlplSTQLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 124 LTTGLILSTAMKLPPITLL------YMTSPSLNPTFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 768700466 198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-271 2.56e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 2.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 105 KLGLvpfHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAI-----LSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 180 AFSSISHLGWMTIIISY--NPKLTLLNFYLYSLMTATVFLTMNSM------KVLNLSTLMTAWTKVPSLNAMLLLTLLSL 251
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397

                        170       180
                 ....*....|....*....|
gi 768700466 252 AGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032 398 MGLPYLTGFYSKDLIL-ELT 416
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 4.24e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.32  E-value: 4.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  52 AIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHPASCLILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 116 PEVLQGSPLTTGLILSTAMKLPPITLLYMTSP--SLNPTFLTTMAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK12650 PRK12650
DUF4040 family protein;
29-194 8.71e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.18  E-value: 8.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP---ASCLILTSAIAM- 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSdvwAEKPGLTTVVAVl 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 105 -------KLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSL--NPTF---LTTMAILSTALGGWMGLNQ 172
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVWnwlLIIVGMITALMGAVFAVQK 293

                        170       180
                 ....*....|....*....|..
gi 768700466 173 TQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATI 315
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 1.07e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.70  E-value: 1.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  96 LILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLILSTAMKLPPI-------TLLYMTSPSLNPTFLTTMAILSTALGGWM 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 169 GLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYLYS---LMTAtVFLTMNSMKVL----NLSTLMTAWTKVPS 239
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHdmvVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEPL 368

                        170       180
                 ....*....|....*....|....*....
gi 768700466 240 LNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 369 FGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.34e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.58  E-value: 1.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  48 HHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHPAS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 113 FWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPT-----FLTTMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 188 GWMTIIISYNPK------LTLLNFYL--YSLMTATVFLTM----NSMKVLNLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 768700466 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-266 1.41e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 1.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  92 PASCLILTSAIAmKLGLVPFHFWFPEVLQG-SPLTTGLILSTAMKLPpITLLYMTSPSL--NPTFLTTMAI---LSTALG 165
Cdd:PRK12647 196 AILLLVLGGAFT-KSAQFPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLggTPLWQTILPLfggLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 166 GWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----SLMTATVFLTMNSMK-------VLNLSTLmtaW 234
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---R 350

                        170       180       190
                 ....*....|....*....|....*....|..
gi 768700466 235 TKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 351 RAMPITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 2.56e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.63  E-value: 2.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  55 AATKYFLVQAAASTLVLFSSMTNAWHTGQ--WDITQLTH---PASCLILTS-----AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 118 ----VLQGSPLTTG--LILSTAMKLPPITLLYMtSPSlnptfLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMT 191
Cdd:PRK12561 218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYF-APA-----LAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                 ....
gi 768700466 192 IIIS 195
Cdd:PRK12561 292 LGIA 295
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 4.15e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLILS-TAMKLPPITLLYMTSP-------SLNPTFLtTMAILSTALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|..
gi 768700466 173 TQIRKILAFSSISHLGWMTIII 194
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITL 339
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-316 8.80e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 37.75  E-value: 8.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466  95 CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPITLLYMTSPSLNPTFLTTMAI-----LSTALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 170 LNQTQIRKILAFSSISHLGWMTIIISynpkltlLNFY---LYSLMT-----ATVFLTMNS-MKVLNLSTLMTAW----TK 236
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNhaffkALLFLSAGSvIHALSDEQDMRKMggliSF 365

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700466 237 VPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFY-LRLAYCTTITLPPHTTNHMKQW 315
Cdd:MTH00020 366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYsIRLIYLTFLSNTNLKKAVFFHL 445


                 .
gi 768700466 316 H 316
Cdd:MTH00020 446 H 446
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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