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Conserved domains on  [gi|768700444|gb|AJV26386|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Anthus trivialis trivialis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.32e-167

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 470.46  E-value: 1.32e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700444 321 TPILVAILATMSITLLPIAPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.32e-167

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 470.46  E-value: 1.32e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700444 321 TPILVAILATMSITLLPIAPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.27e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 8.27e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPITLLYMTSPSLNPT-----FLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  165 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYTLMTATVFLAMNSI-----KVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 768700444  236 KVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.55e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.55e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 154 -LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YTLMTATVFLAMNSIK----- 223
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700444 224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 3.83e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 3.83e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YTLMTA---TVFLAMNSIK--- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLgafGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700444  224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.32e-167

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 470.46  E-value: 1.32e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700444 321 TPILVAILATMSITLLPIAPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.17e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 388.78  E-value: 2.17e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSlNPTFLTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 768700444 321 TPIL-VAILATMSITLLPIAPMILTII 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 2.07e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 386.20  E-value: 2.07e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 768700444 321 TPILVAILATMSITLLPIAPMILTII 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 2.78e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 342.98  E-value: 2.78e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*..
gi 768700444 319 KPTPILVAILATMSITLLPIAPMILTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 5.42e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 293.80  E-value: 5.42e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 768700444 321 TPILVAILATMSITLLPIAPMILTII 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-346 5.97e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.54  E-value: 5.97e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330       340
                 ....*....|....*....|....*..
gi 768700444 321 TPILVAILATMS-ITLLPIAPMILTII 346
Cdd:MTH00041 321 ITVYGVILSILSsISILGLLLIPLFLS 347
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.15e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 187.34  E-value: 1.15e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   1 MNPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  81 tgqwdITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTspsLNPTFLTTMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 768700444 321 TPILVaILATMSITLLPIAPMILTI 345
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 4.08e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 156.97  E-value: 4.08e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   5 AKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  85 DITqlthptscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNP-TFLTTMAILSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSiKVLNLSTLMTAWTKVPSLNAV 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 768700444 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 5.60e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.17  E-value: 5.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   7 LIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  87 TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAILSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 167 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSLNAVLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYcTTITLPPHTTNhmkqwHTNKPTPILVA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                        330
                 ....*....|....
gi 768700444 327 ILATMSITLLPIAP 340
Cdd:MTH00011 317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 7.56e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.18  E-value: 7.56e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   8 IFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  88 qLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLymTSPSLNPTFLTTMAILSTALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 168 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTlMTAWTKVPSLNAVLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTItlppHTTNHMKQWHTNKPTPILVA 326
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                        330
                 ....*....|....*.
gi 768700444 327 ILATMSITLLPIAPMI 342
Cdd:MTH00197 308 ILLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.27e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 8.27e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPITLLYMTSPSLNPT-----FLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  165 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYTLMTATVFLAMNSI-----KVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 768700444  236 KVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 1.75e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.42  E-value: 1.75e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  79 WHTGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNptFLTTMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNP----KLTLLNFYLYTLMTATVF---LAMNSIKVLnLSTLM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 768700444 232 TAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.55e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.55e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 154 -LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YTLMTATVFLAMNSIK----- 223
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700444 224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.52e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 1.52e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVL--------------FSSMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  79 WHTGQWDITQLThpTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 153 -FLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTL--LNFYL--YTLMTATVFLAMNSIK---- 223
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkgg 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700444 224 -VLNLSTL-MTAWTKvPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRL 296
Cdd:PRK05777 351 eAESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 3.83e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 3.83e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   14 LLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YTLMTA---TVFLAMNSIK--- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLgafGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700444  224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.36e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 89.31  E-value: 1.36e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   8 IFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  87 ----TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTtmAILST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 163 ALGGWMGLNQTQIRKILAFSSISHLG---WMTIIISYNP-KLTLLNFYLYTLMTATVFLAMNSIK-----VLNLSTLMTa 233
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKltkglIVEVSGLSR- 337

                        250       260       270
                 ....*....|....*....|....*....|....
gi 768700444 234 wtKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 338 --KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 1.07e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.49  E-value: 1.07e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  92 ---------PTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAM-KLPP------ITLLYMTSPSLNP-TFL 154
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 155 TTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----TLMTATVFLAMNSIKVL----N 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 768700444 227 LSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAI 282
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-218 8.67e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 75.28  E-value: 8.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   3 PQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  74 SMTNAWHTGQ----WDITQLTHPTS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768700444 140 TLLymTSPSLNPTFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLA 218
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTYLVSALA 423
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 1.93e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.80  E-value: 1.93e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   7 LIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLVL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  82 GQWDI------TQLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITL----LYMTSP 147
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768700444 148 SLNP---TFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK------LTLLNFYLY 208
Cdd:CHL00049 274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 9.75e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.84  E-value: 9.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  50 PRAIEAATKYFLVQAAASTLVLF-SSMTNAWHTGQwdiTQL--------THPTSCLILT-----SAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 116 PEVLQGSPLTTGLLLSTAMKLP----PITLLYMTSPSLNP---TFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 768700444 189 WMTI 192
Cdd:PRK02504 314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-198 5.49e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.40  E-value: 5.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  49 HPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW--DITQLTH-----PTSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 119 LQGSPLTTGLLLSTAMK-----------LP--PITLLYMTspslnpTFLTTMAILSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:COG1008  236 HVEAPTAGSVLLAGVLLkmggygllrfaLPlfPEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309

                        170
                 ....*....|....
gi 768700444 186 HLGWMTI-IISYNP 198
Cdd:COG1008  310 HMGFVLLgIFALNP 323
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.04e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.64  E-value: 1.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFS---------SMTNAWHTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTAMKLPPI--TLLYMTSPSLNPTFL----TTMAILSTALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLATVgwviIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 174 QIRKILAFSSISHLGWMTI-----IISY-NPKLT----------LLNFYLYTLMTATVFLA----MNSIKVLNLSTLMTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 768700444 234 WTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.80e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 1.80e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-SMTNAwHTGQWDITQL--------THPTSCLILTSAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 104 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTAMKLPP----------ITLLYMTSPSLNpTFLTTMAILSTALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 173 TQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YTLMTATVFLAMNSIKVL----NLSTLMTAWTKVPSLNAVL 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 768700444 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 5.02e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.79  E-value: 5.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 768700444  291 FFYLRLAYCTTITLPPHTTNHMKQWHTNKPTPI-LVAILATMSITLLPIAP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-192 2.73e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 52.08  E-value: 2.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   7 LIFVTSLLLgttITMSSNHWIMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWD 85
Cdd:COG1009  118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  86 ITQL-----THPTSCLILTSAIAM------KLGLVPFHFWFPEVLQG-SPLTTgLLLSTAMKLPPITLLYMTSP--SLNP 151
Cdd:COG1009  194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSP 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 768700444 152 TFLTTMAI--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:COG1009  273 VWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-198 3.83e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 3.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   50 PRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW----DITQLTHPTSC-----LILTSAIAMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  119 ---LQGSPLTTGLLLSTA--------MKLPPITLLYMTspslnpTFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygflrfnLPLFPDASLYFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305

                         170
                  ....*....|..
gi 768700444  188 GWMTI-IISYNP 198
Cdd:TIGR01972 306 GFVLLgIFSFNE 317
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 4.92e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.46  E-value: 4.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLL------YMTSPSLNPTFLTtMAILSTALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                         90       100
                 ....*....|....*....|....*
gi 768700444 170 LNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-215 1.61e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  13 LLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  87 TQLTHPT----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPT---- 152
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768700444 153 ----FLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTATV 215
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 4.11e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.19  E-value: 4.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-----SMTNAWHTGqwDITQLTHP--------TSCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 100 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITL------------LYMTSPSLNPTFLTtMAILSTALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 168 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----TLMTATVFLAMNSIK----VLNLSTLMTAWTKVPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 768700444 240 LNAVLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 7.09e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.62  E-value: 7.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   8 IFVTSLLLgttiTMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYF---------------LVQAAASTLVLF 72
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  73 SSMTNAWhTGQWDITQLTHPTsclILTSAIAM-------KLGLVPFHFWFPEVLQGSP-----LTTGLLLSTAMkLPPIT 140
Cdd:PRK06458 192 GEMAILW-TELLKHASLLDPT---LMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLR 266

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 768700444 141 LLYMTSPSLNPTF----LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:PRK06458 267 YYILIDAAIGSDFpgrlLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 1.37e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.91  E-value: 1.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444   2 NPQAKLIFVTSLLLGTTITMSSNHWIMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASTLVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  82 GQWDIT-------QLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLT--------------TGLLLSTAMkL 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSfsavlsgqlsklgaYGFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 137 PPITLL-----YMTSPSLNPTFLTTMAIlSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLT----LLNFYL 207
Cdd:PRK08668 254 PGTKLFsefgtYRGVPLFNYILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFN 332

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768700444 208 YTLMTATVFLAMNSI----KVLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668 333 HALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.43e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.58  E-value: 3.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  50 PRAIEAATKYFLVQAAASTLVLFSSMTNAWH----TGQWDITQLTH---PTSCLILT-----SAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 118 VLQ-----GSPLTTGLLLSTA--------MKLPPITLLYMTspslnpTFLTTMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrfsLPLFPDASHEFA------PIIITLGVIAIIYGALVALAQTDIKKLIAYSSI 310

                        170
                 ....*....|
gi 768700444 185 SHLGWMTIII 194
Cdd:PRK05846 311 SHMGFVTLGI 320
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 1.23e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.54  E-value: 1.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  55 AATKYFLVQAAASTLVLFSSMTNAWHTG-------QWDITQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 124 LTTGLLLSTAMKLPPITLL------YMTSPSLNPTFLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 768700444 198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
PRK12650 PRK12650
DUF4040 family protein;
29-194 2.35e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 2.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHPTSCL---ILTSAIAM- 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVl 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 105 -------KLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSL--NPTF---LTTMAILSTALGGWMGLNQ 172
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVWnwlLIIVGMITALMGAVFAVQK 293

                        170       180
                 ....*....|....*....|..
gi 768700444 173 TQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATI 315
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-188 3.00e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 3.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  59 YFLVQAAASTLVLFSSMTNAW-HTGQWDITQLTHPT-----SCLILTSAIAMKLGLVPFHFWFPEVLQGSP-----LTTG 127
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768700444 128 LLLSTAMKLPPITLLYMTSPSLNPTFLT-TMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667 246 VMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 3.47e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.24  E-value: 3.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  92 PTSCLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTAMKLPPI-------TLLYMTSPSLNPTFLTTMAILSTAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 165 GGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYLY---TLMTAtVFLAMNSIKVL----NLSTLMTAWT 235
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYR 364

                        170       180       190
                 ....*....|....*....|....*....|...
gi 768700444 236 KVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 4.22e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.12  E-value: 4.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  48 HHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHPTS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 113 FWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPT-----FLTTMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 188 GWMTIIISYNPK------LTLLNFYL--YTLMTATVFLAMNSIK----VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGIVAheaaTRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 768700444 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 5.55e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 5.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  55 AATKYFLVQAAASTLVLFSSMTNAWHTGQ--WDITQLTH---PTSCLILTS-----AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 118 ----VLQGSPLTTG--LLLSTAMKLPPITLLYMtSPSLnptflTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMT 191
Cdd:PRK12561 218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYF-APAL-----AILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                 ....
gi 768700444 192 IIIS 195
Cdd:PRK12561 292 LGIA 295
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 7.16e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.44  E-value: 7.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 109 VPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSL--NPTFLTTMAI---LSTALGGWMGLNQTQIRKILAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLggTPLWQTILPLfggLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 184 ISHLGWMTIIISYNPKLTLLNFYLY----TLMTATVFLAMNSIK-------VLNLSTLmtaWTKVPSLNAVLLLTLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                        170
                 ....*....|....
gi 768700444 253 GLPPLTGFLPKWLI 266
Cdd:PRK12647 369 GLPPLFGFLAKELI 382
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-222 1.70e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.33  E-value: 1.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTTMAI-----LSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 768700444 180 AFSSISHLGWMTIIISY--NPKLTLLNFYLYTLMTATVFLAMNSI 222
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSV 362
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.07e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  52 AIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHPTSCLILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 116 PEVLQGSPLTTGLLLSTAMKLPPITLLYMTSP--SLNPTFLTTMAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 2.17e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.90  E-value: 2.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TAMKLPPITLLYMTSP-------SLNPTFLtTMAILSTALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|..
gi 768700444 173 TQIRKILAFSSISHLGWMTIII 194
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITL 339
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-222 4.14e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 39.12  E-value: 4.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  75 MTNAW---HTGQWDITQL-------THPTSCLILtsAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYM 144
Cdd:MTH00066 182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIR 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444 145 TSPSL--NPTFLTT---MAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYN-PKLTLLNFYLYTLMTATVFLA 218
Cdd:MTH00066 260 FHPLLenNQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNqPQLAFFHICTHAFFKAMLFLC 339


                 ....
gi 768700444 219 MNSI 222
Cdd:MTH00066 340 SGSI 343
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 69-203 7.94e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.01  E-value: 7.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700444  69 LVLFSSMTNAWHTGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSP- 147
Cdd:MTH00211 181 MVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPl 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768700444 148 -SLNPTFLTTM---AILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYN-PKLTLL 203
Cdd:MTH00211 261 fQNNQLILGAVlllGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNqPQLAFL 321
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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