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Conserved domains on  [gi|768700442|gb|AJV26385|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Anthus spinoletta spinoletta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-184 1.02e-102

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 299.05  E-value: 1.02e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSI 184
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-184 1.02e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 299.05  E-value: 1.02e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSI 184
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-184 3.72e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.10  E-value: 3.72e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  14 LLGTTIT*SSNHWIMAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  92 PVS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270

                        170       180       190
                 ....*....|....*....|....*....|..
gi 768700442 154 -LTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSI 302
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-184 9.50e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 78.51  E-value: 9.50e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   23 SNHWIMAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   91 HPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKLPPITLLYMTSPSLNPT-----FLTIMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180
                  ....*....|....*....|
gi 768700442  165 GGWMGLNQTQIRKILAFSSI 184
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSI 180
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-184 5.19e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 74.60  E-value: 5.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   14 LLGTTIT*SSNHWIMAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   93 VSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190
                  ....*....|....*....|....*....|.
gi 768700442  154 LTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSI 302
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-184 1.02e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 299.05  E-value: 1.02e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSI 184
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-184 2.07e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 255.23  E-value: 2.07e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSI 184
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-184 7.34e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 253.57  E-value: 7.34e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSlNPTFLTIMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSI 183
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-184 2.98e-76

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 231.66  E-value: 2.98e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSI 184
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-184 2.17e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 199.04  E-value: 2.17e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSI 184
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-184 3.57e-59

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 188.22  E-value: 3.57e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 TGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSI 184
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-184 8.22e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 134.95  E-value: 8.22e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   1 MNPQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  81 tgqwdITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTspsLNPTFLTIMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180
                 ....*....|....*....|....
gi 768700442 161 STALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSI 176
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-184 6.63e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 124.61  E-value: 6.63e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   5 AKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  85 DITqlthpvscLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNP-TFLTIMAILSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180
                 ....*....|....*....|.
gi 768700442 164 LGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSI 177
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-184 3.10e-29

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 109.87  E-value: 3.10e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   7 LIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  87 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAILSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170
                 ....*....|....*...
gi 768700442 167 WMGLNQTQIRKILAFSSI 184
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSI 180
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-184 1.43e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 94.74  E-value: 1.43e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   8 IFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  88 qLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLymTSPSLNPTFLTIMAILSTALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170
                 ....*....|....*..
gi 768700442 168 MGLNQTQIRKILAFSSI 184
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSI 169
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-184 3.72e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.10  E-value: 3.72e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  14 LLGTTIT*SSNHWIMAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  92 PVS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270

                        170       180       190
                 ....*....|....*....|....*....|..
gi 768700442 154 -LTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSI 302
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-184 7.46e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 88.72  E-value: 7.46e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  14 LLGTTIT*SSNHWIMAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  93 VS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPITLLYMTSPSLNPT---F 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190
                 ....*....|....*....|....*....|.
gi 768700442 154 LTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSI 303
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-184 8.12e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 82.39  E-value: 8.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  13 LLLGTTIT*SSNHWIMAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  79 WHTGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNptFLTIMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180
                 ....*....|....*....|....*.
gi 768700442 159 ILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGI 185
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-184 5.95e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 80.45  E-value: 5.95e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   8 IFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  87 ----TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNptFLTIMAILST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                        170       180
                 ....*....|....*....|..
gi 768700442 163 ALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGI 280
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-184 9.50e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 78.51  E-value: 9.50e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   23 SNHWIMAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   91 HPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKLPPITLLYMTSPSLNPT-----FLTIMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180
                  ....*....|....*....|
gi 768700442  165 GGWMGLNQTQIRKILAFSSI 184
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSI 180
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-184 5.19e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 74.60  E-value: 5.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   14 LLGTTIT*SSNHWIMAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   93 VSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190
                  ....*....|....*....|....*....|.
gi 768700442  154 LTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSI 302
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-184 1.58e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.64  E-value: 1.58e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   7 LIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLVL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  82 GQWDI------TQLTHPVSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPL-----------ITGLLLSTAMklppIT 140
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI----FD 269

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 768700442 141 LLYMTSPSLNPTFLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:CHL00049 270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-184 2.05e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 64.49  E-value: 2.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   3 PQAKLIFITSLLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  74 SMTNAWHTGQ--------------WDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 768700442 140 TLLymTSPSLNPTFLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGI 389
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-184 6.67e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 62.86  E-value: 6.67e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  13 LLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  93 VS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSP-----LITGLLLSTA----MKLppITLLYMTSPSLNP-T 152
Cdd:COG0651  196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLTKVGvyaiLRV--LTLLFGADPALFLgT 273

                        170       180       190
                 ....*....|....*....|....*....|..
gi 768700442 153 FLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:COG0651  274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSV 305
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-184 2.09e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.61  E-value: 2.09e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  50 PRAIEAATKYFLVQAAASTLVLF-SSMTNAWHTGQwdiTQLTH----------PVSCLILT---SAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspsLGLALALVfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768700442 116 PEVLQGSPLITGLLLSTAMKLP----PITLLYMTSPSLNP---TFLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSI 309
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-184 5.47e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.64  E-value: 5.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSmtnAWHTGQWDI-------------TQLTHPVSCLIL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  99 TSAIAMKLGLVPFHFWFPEVLQGSPL-ITGLLL-STAMKLPPI--TLLYMTSPSLNPTFL----TIMAILSTALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLLvIKQAGLYALarVLFSIYGPAINLATVgwviIILGCLTMFVGVAMAV 306

                        170
                 ....*....|....
gi 768700442 171 NQTQIRKILAFSSI 184
Cdd:PRK08376 307 VQKDVKRLLAYHSV 320
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-184 1.02e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.77  E-value: 1.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  49 HPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW--DITQLTH-----PVSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768700442 119 LQ-----GSPLITGLLLST--------AMKLPPITLLYMTspslnpTFLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMggygllrfALPLFPEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-184 2.21e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 43.77  E-value: 2.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   50 PRAIEAATKYFLVQAAASTLVLFSSMTNAW-HTGQWDITQL-THPVSC-------LILTSAIAMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768700442  119 ---LQGSPLITGLLLSTA--------MKLPPITLLYMTspslnpTFLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygflrfnLPLFPDASLYFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSI 302
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-184 4.38e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 42.99  E-value: 4.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442   8 IFITSLLLgttiT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYF---------------LVQAAASTLVLF 72
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  73 SSMTNAW-----HTGQWDITQLTHPVSCLILtsAIAMKLGLVPFHFWFPEVLQGSP-----LITGLLLSTAMkLPPITLL 142
Cdd:PRK06458 192 GEMAILWtellkHASLLDPTLMKLAFVFLLI--GFGTKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLRYY 268

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 768700442 143 YMTSPSLNPTF----LTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK06458 269 ILIDAAIGSDFpgrlLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSI 314
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-184 1.37e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.66  E-value: 1.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  13 LLLGTTIT*SSNHWIMAWMGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  87 TQLTHPV----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPT---- 152
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 768700442 153 ----FLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSI 306
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-184 1.61e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.29  E-value: 1.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  23 SNHWIMAWMGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTH---------- 91
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  92 --PVSCLILTSAIAmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSP--SLNPTFLTIMAI--LSTAL- 164
Cdd:COG1009  210 ltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIigAITALf 288

                        170       180
                 ....*....|....*....|
gi 768700442 165 GGWMGLNQTQIRKILAFSSI 184
Cdd:COG1009  289 AALIALAQTDIKRVLAYSTV 308
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-184 1.69e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 41.02  E-value: 1.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-SMTNAwHTGQWDITQL--------THPVSCLILTSAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442 104 MKLGLVPFHFWFPEVLQG-SPLITGLLLSTAMKLPP----------ITLLYMTSPSLNpTFLTIMAILSTALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170
                 ....*....|..
gi 768700442 173 TQIRKILAFSSI 184
Cdd:PRK08375 293 DDVKRVLAYSTV 304
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-184 1.75e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.25  E-value: 1.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  59 YFLVQAAASTLVLFSSMTNAW-HTGQWDITQLTHP-----VSCLILTSAIAMKLGLVPFHFWFPEVLQGSP-----LITG 127
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSG 245

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 768700442 128 LLLSTAMKLPPITLLYMTSPSLNPTFLTIMA-ILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK08667 246 VMLKVAVYGLVRFLMDVLSPELWWGVLILLAgSISALLGVIYALKEHDLKGLLAYSSI 303
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-181 1.78e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.45  E-value: 1.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPITLL------YMTSPSLNPTFLtIMAILSTALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVL-VLGLATMLLGGWRA 285

                         90
                 ....*....|..
gi 768700442 170 LNQTQIRKILAF 181
Cdd:PRK12644 286 LRQHDLKLILAY 297
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-184 1.57e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  48 HHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQLTHPVS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768700442 113 FWFPEVLQGSPLITGLLLSTAMKLPPITLLYMTSPSLNPT-----FLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTI 311
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-184 2.40e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 37.76  E-value: 2.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700442  55 AATKYFLVQAAASTLVLFSSMTNAWHTG--QWDITQL---THPVSCLILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768700442 124 LITGLLLSTAMKLPPITLL------YMTSPSLNPTFLTIMAILSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSI 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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