|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.60e-154 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 436.56 E-value: 3.60e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQ 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 TGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 768700426 321 TPILIAILATMSITLLPIAPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
4.26e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 85.83 E-value: 4.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWDITQLTHPTSC*I---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 98 -------LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPITLLYMTSPSLNPT-----FLTIMAILSTAL 164
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 165 GGWMGLN************ISHLGWMTIIIS----YNPKLTLLNFYLYTLMTATVFLAMNSI-----KVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 768700426 236 KVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-297 |
4.93e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 75.75 E-value: 4.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 14 L*GTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 93 TSC*ILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 154 LTIMAILSTALGGWMGLN************ISHLGWMTIIISYNPKLTLLN--FYL--YTLMTA---TVFLAMNSIK--- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLgafGVLSLLRSYKdew 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700426 224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
14-298 |
1.92e-12 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 67.83 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 14 L*GTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAwQTGQWDITQ--- 88
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGiaa 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 89 -LTHPTSC*IL--------TSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007 191 aLAAGGANSPLlllglvlvLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 154 -LTIMAILSTALGGWMGLN************ISHLGWMTI-IISYNPK-LTLLNFYL--YTLMTATVFLAMNSIK----- 223
Cdd:COG1007 271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700426 224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.60e-154 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 436.56 E-value: 3.60e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQ 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 TGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 768700426 321 TPILIAILATMSITLLPIAPMILTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.76e-122 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 356.15 E-value: 1.76e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQ 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 TGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*.
gi 768700426 321 TPILIAILATMSITLLPIAPMILTII 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.56e-122 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 355.27 E-value: 3.56e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQ 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 TGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSlNPTFLTIMAIL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 768700426 321 TPIL-IAILATMSITLLPIAPMILTII 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
3.00e-104 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 309.85 E-value: 3.00e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQ 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 TGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319
|
330 340
....*....|....*....|....*..
gi 768700426 319 KPTPILIAILATMSITLLPIAPMILTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.19e-86 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 264.91 E-value: 1.19e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQ 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 TGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*.
gi 768700426 321 TPILIAILATMSITLLPIAPMILTII 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-346 |
1.09e-67 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 216.34 E-value: 1.09e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQ 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 TGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAIL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....*..
gi 768700426 321 TPILIAILATMS-ITLLPIAPMILTII 346
Cdd:MTH00041 321 ITVYGVILSILSsISILGLLLIPLFLS 347
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
3.51e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 159.99 E-value: 3.51e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 1 MNPQAKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWq 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 81 tgqwdITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTspsLNPTFLTIMAIL 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 161 STALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 241 NAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311
|
330 340
....*....|....*....|....*
gi 768700426 321 TPILIaILATMSITLLPIAPMILTI 345
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-302 |
5.63e-37 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 135.40 E-value: 5.63e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 5 AKLIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQW 84
Cdd:MTH00144 5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 85 DITqlthptsc*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNP-TFLTIMAILSTA 163
Cdd:MTH00144 85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 164 LGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSiKVLNLSTLMTAWTKVPSLNAV 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 768700426 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
7-340 |
4.69e-36 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 132.98 E-value: 4.69e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 7 LIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSmtnawqTGQWDI 86
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 87 TQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNPTFLTIMAILSTALGG 166
Cdd:MTH00011 83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 167 WMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTLMTAWTKVPSLNAVLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYcTTITLPPHTTNhmkqwHTNKPTPILIA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316
|
330
....*....|....
gi 768700426 327 ILATMSITLLPIAP 340
Cdd:MTH00011 317 ILISMCTLSLGLIP 330
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-342 |
3.02e-29 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 114.77 E-value: 3.02e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 8 IFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTgqwdit 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 88 qLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLymTSPSLNPTFLTIMAILSTALGGW 167
Cdd:MTH00197 76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 168 MGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLAMNSIKVLNLSTlMTAWTKVPSLNAVLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAYCTTItlppHTTNHMKQWHTNKPTPILIA 326
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307
|
330
....*....|....*.
gi 768700426 327 ILATMSITLLPIAPMI 342
Cdd:MTH00197 308 ILLMMMLPLLMIFTMI 323
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
4.26e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 85.83 E-value: 4.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWDITQLTHPTSC*I---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 98 -------LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPITLLYMTSPSLNPT-----FLTIMAILSTAL 164
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 165 GGWMGLN************ISHLGWMTIIIS----YNPKLTLLNFYLYTLMTATVFLAMNSI-----KVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 768700426 236 KVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-267 |
7.07e-17 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 80.46 E-value: 7.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 13 LL*GTTITMSSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFS-------------SMTNA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 79 WQTGQWDITQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNptFLTIMA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 159 ILSTALGGWMGLN************ISHLGWMTIIISYNP----KLTLLNFYLYTLMTATVF---LAMNSIKVLnLSTLM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238
|
250 260 270
....*....|....*....|....*....|....*.
gi 768700426 232 TAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-297 |
4.93e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 75.75 E-value: 4.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 14 L*GTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 93 TSC*ILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PITLLYMTSPS----LNPTF 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 154 LTIMAILSTALGGWMGLN************ISHLGWMTIIISYNPKLTLLN--FYL--YTLMTA---TVFLAMNSIK--- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLgafGVLSLLRSYKdew 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768700426 224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
14-296 |
2.54e-13 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 70.62 E-value: 2.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 14 L*GTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 93 TS------------C*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPSLNPT---F 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 154 LTIMAILSTALGGWMGLN************ISHLGWMTIIISYNPKLTL--LNFYL--YTLMTATVFLAMNSIK-----V 224
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768700426 225 LNLSTL-MTAWTKvPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRL 296
Cdd:PRK05777 353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
7-267 |
1.30e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 68.50 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 7 LIFITSLl*GTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWD 85
Cdd:MTH00199 102 LILIVAL--GSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 86 I----TQLTHPTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLYMTSPSLNptFLTIMAILS 161
Cdd:MTH00199 180 IqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLS 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 162 TALGGWMGLN************ISHLG---WMTIIISYNP-KLTLLNFYLYTLMTATVFLAMNSIK-----VLNLSTLMT 232
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKltkglIVEVSGLSR 337
|
250 260 270
....*....|....*....|....*....|....*
gi 768700426 233 awtKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 338 ---KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
14-298 |
1.92e-12 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 67.83 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 14 L*GTTITMSSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAwQTGQWDITQ--- 88
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGiaa 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 89 -LTHPTSC*IL--------TSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPITLLYMTSPSLNPTF-- 153
Cdd:COG1007 191 aLAAGGANSPLlllglvlvLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWql 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 154 -LTIMAILSTALGGWMGLN************ISHLGWMTI-IISYNPK-LTLLNFYL--YTLMTATVFLAMNSIK----- 223
Cdd:COG1007 271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700426 224 VLNLSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAISLLSLLSLFFYLRLAY 298
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-340 |
3.23e-08 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 49.18 E-value: 3.23e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 768700426 291 FFYLRLAYCTTITLPPHTTNHMKQWHTNKPTPI-LIAILATMSITLLPIAP 340
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
7-218 |
2.65e-07 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 52.17 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 7 LIFITSLl*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLVLFSSMTN 77
Cdd:MTH00198 193 LVLIVGL--GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALY 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 78 AWQTGQ----WDITQLTHPTS----------C*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITLLy 143
Cdd:MTH00198 271 FGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL- 349
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768700426 144 mTSPSLNPTFLTIMAILSTALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLYTLMTATVFLA 218
Cdd:MTH00198 350 -TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTYLVSALA 423
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
13-282 |
4.96e-07 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 50.92 E-value: 4.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 13 LL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWDITQLTH- 91
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 92 ---------PTSC*ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAM-KLPP------ITLLYMTSPSLNP-TFL 154
Cdd:COG0651 196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 155 TIMAILSTALGGWMGLN************ISHLGWMTIIISYNPKLTLLNFYLY----TLMTATVFLAMNSIKVL----N 226
Cdd:COG0651 276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 768700426 227 LSTLMTAWTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATAI 282
Cdd:COG0651 356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
7-208 |
9.89e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 50.39 E-value: 9.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 7 LIFITSLL*GTTITMSSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLVL--FSSM--TNAWQT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 82 GQWDI------TQLTHPTSC*I----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPITL----LYMTSP 147
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768700426 148 SLNP---TFLTIMAILSTALGGWMGLN************ISHLGWMTI-IISYNPK------LTLLNFYLY 208
Cdd:CHL00049 274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF 344
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
50-165 |
4.13e-06 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 48.51 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 50 PRAIEAATKYFLVQAAASTLVLF-SSMTNAWQTGQwdiTQL--------THPTSC*ILT-----SAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 768700426 116 PEVLQGSPLTTGLLLSTAMKLP----PITLLYMTSPSLNP---TFLTIMAILSTALG 165
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLG 290
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-266 |
4.87e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 42.01 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWQTGQWDITQLTHPTS----------C*ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSenptvvakiaLALFIAG 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTAMKLPPI--TLLYMTSPSLNPTFL----TIMAILSTALGGWMGLN** 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLATVgwviIILGCLTMFVGVAMAVVQK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768700426 174 **********ISHLGWMTI-----IISY-NPKLT----------LLNFYLYTLMTATVFLA----MNSIKVLNLSTLMTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389
|
250 260 270
....*....|....*....|....*....|...
gi 768700426 234 WTKVPSLNAVLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
|
|
| |
