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Conserved domains on  [gi|768457939|gb|AJU15692|]
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intron-encoded RNA maturase bI4 (mitochondrion) [Saccharomyces cerevisiae YJM1190]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 10-252 1.96e-122

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 366.80  E-value: 1.96e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  10 LSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFF 89
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  90 FMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGF 169
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHT--WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 170 SVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPN 249
Cdd:MTH00156 159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238


                 ...
gi 768457939 250 TLG 252
Cdd:MTH00156 239 LLG 241
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
408-495 2.80e-05

LAGLIDADG endonuclease;


:

Pssm-ID: 395767  Cd Length: 101  Bit Score: 43.39  E-value: 2.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  408 LAGLIDGDGYFCITKNK---------YASCEITVELKDEKMLRQIQDKFG-GSVKLRSGVKAIRYRL-KNKEGMIKLINA 476
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKsksykgyrvRLRFQISLHSKDENLLEKIKNYLGiGSISKRKNDNTVIYIIsNSKKSLNIIIPY 80

                          90
                  ....*....|....*....
gi 768457939  477 VNGNIRNSKRLVQFNKVCI 495
Cdd:pfam00961  81 FDKYPLLTSKYLDYLDFKK 99
LAGLIDADG_1 super family cl24136
LAGLIDADG endonuclease;
516-606 7.71e-03

LAGLIDADG endonuclease;


The actual alignment was detected with superfamily member pfam00961:

Pssm-ID: 395767  Cd Length: 101  Bit Score: 36.46  E-value: 7.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  516 GFFDADGTI-------NYSDKLKIRPQLTISVTNKYLHDVEYYREVFG-GNIYFDKaKNGYFKWSINN-KKLHNIFYTYN 586
Cdd:pfam00961   3 GFIDGDGSFsinvtksKSYKGYRVRLRFQISLHSKDENLLEKIKNYLGiGSISKRK-NDNTVIYIISNsKKSLNIIIPYF 81

                          90       100
                  ....*....|....*....|
gi 768457939  587 KSCPSKSNKGKRLFLIDKFY 606
Cdd:pfam00961  82 DKYPLLTSKYLDYLDFKKIY 101
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-252 1.96e-122

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 366.80  E-value: 1.96e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  10 LSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFF 89
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  90 FMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGF 169
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHT--WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 170 SVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPN 249
Cdd:MTH00156 159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238


                 ...
gi 768457939 250 TLG 252
Cdd:MTH00156 239 LLG 241
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-207 8.39e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 300.44  E-value: 8.39e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   8 VYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGAS 87
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  88 FFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 768457939 168 GFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSS 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
23-249 1.18e-93

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 294.01  E-value: 1.18e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  23 PSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLY 102
Cdd:COG1290   33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 103 YGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFAL 182
Cdd:COG1290  113 YGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFAL 192

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768457939 183 HYL-VPFIIAAMVIMHLMALHIHGSSNPLGI----TGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPN 249
Cdd:COG1290  193 HVLlLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-205 2.05e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.81  E-value: 2.05e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   17 IIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   97 MAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTI 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 768457939  177 QRFFALHYLVPFIIAAMVIMHLMALHIHG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
408-495 2.80e-05

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 43.39  E-value: 2.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  408 LAGLIDGDGYFCITKNK---------YASCEITVELKDEKMLRQIQDKFG-GSVKLRSGVKAIRYRL-KNKEGMIKLINA 476
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKsksykgyrvRLRFQISLHSKDENLLEKIKNYLGiGSISKRKNDNTVIYIIsNSKKSLNIIIPY 80

                          90
                  ....*....|....*....
gi 768457939  477 VNGNIRNSKRLVQFNKVCI 495
Cdd:pfam00961  81 FDKYPLLTSKYLDYLDFKK 99
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
516-606 7.71e-03

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 36.46  E-value: 7.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  516 GFFDADGTI-------NYSDKLKIRPQLTISVTNKYLHDVEYYREVFG-GNIYFDKaKNGYFKWSINN-KKLHNIFYTYN 586
Cdd:pfam00961   3 GFIDGDGSFsinvtksKSYKGYRVRLRFQISLHSKDENLLEKIKNYLGiGSISKRK-NDNTVIYIISNsKKSLNIIIPYF 81

                          90       100
                  ....*....|....*....|
gi 768457939  587 KSCPSKSNKGKRLFLIDKFY 606
Cdd:pfam00961  82 DKYPLLTSKYLDYLDFKKIY 101
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-252 1.96e-122

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 366.80  E-value: 1.96e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  10 LSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFF 89
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  90 FMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGF 169
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHT--WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 170 SVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPN 249
Cdd:MTH00156 159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238


                 ...
gi 768457939 250 TLG 252
Cdd:MTH00156 239 LLG 241
CYTB MTH00191
cytochrome b; Provisional
 3-252 2.68e-120

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 361.93  E-value: 2.68e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   3 FRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLH 82
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  83 ANGASFFFMVMFMHMAKGLYYGSYRspRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIV 162
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYL--NKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 163 SWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILAL 242
Cdd:MTH00191 159 QWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLF 238

                        250
                 ....*....|
gi 768457939 243 FVFYSPNTLG 252
Cdd:MTH00191 239 LVLFSPNLLG 248
CYTB MTH00145
cytochrome b; Provisional
 1-252 9.30e-119

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 358.45  E-value: 9.30e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   1 MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRY 80
Cdd:MTH00145   3 SPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  81 LHANGASFFFMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGND 160
Cdd:MTH00145  83 LHANGASFFFICIYLHIGRGLYYGSYLMQHT--WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 161 IVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLIL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250
                 ....*....|..
gi 768457939 241 ALFVFYSPNTLG 252
Cdd:MTH00145 241 VFLVLFFPNLLG 252
CYTB MTH00119
cytochrome b; Provisional
 4-252 1.31e-113

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 345.35  E-value: 1.31e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   4 RKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHA 83
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  84 NGASFFFMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVS 163
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKET--WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 164 WLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALF 243
Cdd:MTH00119 164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243


                 ....*....
gi 768457939 244 VFYSPNTLG 252
Cdd:MTH00119 244 ALFSPNLLG 252
CYTB MTH00016
cytochrome b; Validated
 3-252 1.73e-110

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 337.03  E-value: 1.73e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   3 FRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLH 82
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  83 ANGASFFFMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIV 162
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMET--WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 163 SWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILAL 242
Cdd:MTH00016 163 QWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLS 242

                        250
                 ....*....|
gi 768457939 243 FVFYSPNTLG 252
Cdd:MTH00016 243 VVLLWPNILG 252
CYTB MTH00022
cytochrome b; Validated
 1-252 1.31e-109

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 334.75  E-value: 1.31e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   1 MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRY 80
Cdd:MTH00022   1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  81 LHANGASFFFMVMFMHMAKGLYYGSYRspRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGND 160
Cdd:MTH00022  81 LHANGASLFFLCLYIHIGRGLYYGGYL--KFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 161 IVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLIL 240
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                        250
                 ....*....|..
gi 768457939 241 ALFVFYSPNTLG 252
Cdd:MTH00022 239 SFIVYFAPNLLG 250
CYTB MTH00100
cytochrome b; Provisional
 4-252 1.64e-108

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 331.99  E-value: 1.64e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   4 RKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHA 83
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  84 NGASFFFMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVS 163
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLET--WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 164 WLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALF 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242


                 ....*....
gi 768457939 244 VFYSPNTLG 252
Cdd:MTH00100 243 VLFSPDLLG 251
CYTB MTH00131
cytochrome b; Provisional
 1-252 2.84e-108

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 331.62  E-value: 2.84e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   1 MA-FRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILR 79
Cdd:MTH00131   1 MAsLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  80 YLHANGASFFFMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGN 159
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKET--WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 160 DIVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLI 239
Cdd:MTH00131 159 TLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLA 238

                        250
                 ....*....|...
gi 768457939 240 LALFVFYSPNTLG 252
Cdd:MTH00131 239 LTSLALFSPNLLG 251
CYTB MTH00053
cytochrome b; Provisional
 2-252 5.41e-106

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 325.51  E-value: 5.41e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   2 AFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYL 81
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  82 HANGASFFFMVMFMHMAKGLYYGSYRspRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDI 161
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 162 VSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILA 241
Cdd:MTH00053 162 VRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILS 241

                        250
                 ....*....|.
gi 768457939 242 LFVFYSPNTLG 252
Cdd:MTH00053 242 IIVFLFPYSLG 252
CYTB MTH00034
cytochrome b; Validated
 4-252 2.05e-105

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 323.97  E-value: 2.05e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   4 RKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHA 83
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  84 NGASFFFMVMFMHMAKGLYYGSYRSprVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVS 163
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 164 WLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALF 243
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242


                 ....*....
gi 768457939 244 VFYSPNTLG 252
Cdd:MTH00034 243 ALLFPTALN 251
CYTB MTH00074
cytochrome b; Provisional
 4-252 1.20e-103

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 319.32  E-value: 1.20e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   4 RKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHA 83
Cdd:MTH00074   6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  84 NGASFFFMVMFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVS 163
Cdd:MTH00074  86 NGASFFFICIYLHIGRGLYYGSYMYKET--WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 164 WLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALF 243
Cdd:MTH00074 164 WIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALL 243


                 ....*....
gi 768457939 244 VFYSPNTLG 252
Cdd:MTH00074 244 SLFSPNLLG 252
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-207 8.39e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 300.44  E-value: 8.39e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   8 VYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGAS 87
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  88 FFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 768457939 168 GFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSS 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00224
cytochrome b; Provisional
 3-251 1.50e-95

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 298.76  E-value: 1.50e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   3 FRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLH 82
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  83 ANGASFFFMVMFMHMAKGLYYGSYRspRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIV 162
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFN--LSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 163 SWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILAL 242
Cdd:MTH00224 163 EWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSL 242


                 ....*....
gi 768457939 243 FVFYSPNTL 251
Cdd:MTH00224 243 MVLFEPNLF 251
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
23-249 1.18e-93

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 294.01  E-value: 1.18e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  23 PSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLY 102
Cdd:COG1290   33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 103 YGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFAL 182
Cdd:COG1290  113 YGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFAL 192

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768457939 183 HYL-VPFIIAAMVIMHLMALHIHGSSNPLGI----TGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPN 249
Cdd:COG1290  193 HVLlLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
CYTB MTH00033
cytochrome b; Provisional
 1-242 1.72e-79

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 256.79  E-value: 1.72e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   1 MAFRKSNVyLSLVNSyIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRY 80
Cdd:MTH00033   1 MRLRKTGL-LEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  81 LHANGASFFFMVMFMHMAKGLYYGSYRspRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGND 160
Cdd:MTH00033  79 VHANGASLFFICVYCHIGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGS 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 161 IVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLIL 240
Cdd:MTH00033 157 IVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF 236


                 ..
gi 768457939 241 AL 242
Cdd:MTH00033 237 VI 238
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-205 2.05e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.81  E-value: 2.05e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   17 IIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   97 MAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTI 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 768457939  177 QRFFALHYLVPFIIAAMVIMHLMALHIHG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00086
cytochrome b; Provisional
 13-252 9.74e-71

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 232.91  E-value: 9.74e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  13 VNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMV 92
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  93 MFMHMAKGLYYGSYRSPRVtlWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVS 172
Cdd:MTH00086  83 LYLHIFKGLFMMSYRLKKV--WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 173 NPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMlILALFVFYSPNTLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239
CYTB MTH00046
cytochrome b; Validated
 10-251 5.62e-52

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 182.88  E-value: 5.62e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  10 LSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFF 89
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  90 FMVMFMHMAKGLYYGSYRspRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGF 169
Cdd:MTH00046  82 FILLFIHMGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGF 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 170 SVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNL-DRIPMHSYFIFKDLVTVFLFMLILALFVFYSP 248
Cdd:MTH00046 160 SVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSP 239


                 ...
gi 768457939 249 NTL 251
Cdd:MTH00046 240 DLV 242
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
98-252 2.71e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 144.69  E-value: 2.71e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939   98 AKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQ 177
Cdd:pfam13631  12 LRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIP 91

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768457939  178 RFFALH-YLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLG 252
Cdd:pfam13631  92 RFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLG 167
PRK03735 PRK03735
cytochrome b6; Provisional
 32-210 2.08e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 127.52  E-value: 2.08e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRV 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 112 TLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFALH-YLVPFII 190
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 768457939 191 AAMVIMHLMALHIHGSSNPL 210
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 23-210 1.75e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 119.06  E-value: 1.75e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  23 PSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLY 102
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939 103 YGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFAL 182
Cdd:CHL00070 107 TGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 768457939 183 HYLV-PFIIAAMVIMHLMALHIHGSSNPL 210
Cdd:CHL00070 187 HTFVlPLLTAVFMLMHFLMIRKQGISGPL 215
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
408-495 2.80e-05

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 43.39  E-value: 2.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  408 LAGLIDGDGYFCITKNK---------YASCEITVELKDEKMLRQIQDKFG-GSVKLRSGVKAIRYRL-KNKEGMIKLINA 476
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKsksykgyrvRLRFQISLHSKDENLLEKIKNYLGiGSISKRKNDNTVIYIIsNSKKSLNIIIPY 80

                          90
                  ....*....|....*....
gi 768457939  477 VNGNIRNSKRLVQFNKVCI 495
Cdd:pfam00961  81 FDKYPLLTSKYLDYLDFKK 99
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
516-606 7.71e-03

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 36.46  E-value: 7.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768457939  516 GFFDADGTI-------NYSDKLKIRPQLTISVTNKYLHDVEYYREVFG-GNIYFDKaKNGYFKWSINN-KKLHNIFYTYN 586
Cdd:pfam00961   3 GFIDGDGSFsinvtksKSYKGYRVRLRFQISLHSKDENLLEKIKNYLGiGSISKRK-NDNTVIYIISNsKKSLNIIIPYF 81

                          90       100
                  ....*....|....*....|
gi 768457939  587 KSCPSKSNKGKRLFLIDKFY 606
Cdd:pfam00961  82 DKYPLLTSKYLDYLDFKKIY 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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