|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
520-864 |
1.72e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 520 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQ 599
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 600 HREqgsikcklEEDLQEATKLLEDKREQlkkskeheklmegeLEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCST 679
Cdd:TIGR02168 767 EER--------LEEAEEELAEAEAEIEE--------------LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 680 QLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKA-LQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLN 758
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELeELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 759 HVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKlrgfHQESELEVHAFDKKLEEMSCQVLQWQ-KQHQND 837
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE----EYSLTLEEAEALENKIEDDEEEARRRlKRLENK 980
|
330 340 350
....*....|....*....|....*....|....
gi 767990634 838 LKM-----LAAKEE--QLREFQEEMAALKENLLE 864
Cdd:TIGR02168 981 IKElgpvnLAAIEEyeELKERYDFLTAQKEDLTE 1014
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
303-867 |
4.65e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 4.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 303 DIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSahierkdkditilqcRL 382
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK---------------EL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 383 QELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLkkekelekqqcmatELEMTVKEAKQDKSKEAECKALQ 462
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE--------------ELEEKVKELKELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 463 AEVQKLKNSL-----EEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKgLLLDKQKADTIQELQRELQMLQ 537
Cdd:PRK03918 300 EFYEEYLDELreiekRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 538 KESSMAEKEQTSN-----RKRVEELSLELSEALRKLENSDKEKRQLQKTVAEqdmkmndmLDRIKHQhreqgSIKCKLEE 612
Cdd:PRK03918 379 KRLTGLTPEKLEKeleelEKAKEEIEEEISKITARIGELKKEIKELKKAIEE--------LKKAKGK-----CPVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 613 DLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSR-----KLEEENENLRAELQCCSTQ-LESSLN 686
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkELAEQLKELEEKLKKYNLEeLEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 687 KYNTSQQVIQDLNKEIALQKESLMSLQAQLDK--ALQKEKHYLQTTItKEAYDALSRKSAACQDDLT---QALEKLNHVT 761
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKlaELEKKLDELEEEL-AELLKELEELGFESVEELEerlKELEPFYNEY 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 762 SETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGfhQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKML 841
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682
|
570 580
....*....|....*....|....*.
gi 767990634 842 AAKEEQLREFQEEMAALKENLLEDDK 867
Cdd:PRK03918 683 EELEKRREEIKKTLEKLKEELEEREK 708
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
520-801 |
6.55e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 6.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 520 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMN--------- 590
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHkleealndl 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 591 -------------DMLDRIKHQHREQGSIKCKLEEDLQEatklLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLK 657
Cdd:TIGR02169 785 earlshsripeiqAELSKLEEEVSRIEARLREIEQKLNR----LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 658 ENSRKLEEENENLRAELQccstQLESSL-----------NKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHY 726
Cdd:TIGR02169 861 GKKEELEEELEELEAALR----DLESRLgdlkkerdeleAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 727 LQTTITKEAY---DALSRKSAACQDDLTQALEKLNHVT----SETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTEL 799
Cdd:TIGR02169 937 EDPKGEDEEIpeeELSLEDVQAELQRVEEEIRALEPVNmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
..
gi 767990634 800 RK 801
Cdd:TIGR02169 1017 RE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-868 |
1.23e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 326 QNL--VKDLRVELE----------AVSEQKRNIMKDMMKLELDLHGLR-EETSAHIERKDKDITILQCRLQELQLEFTET 392
Cdd:COG1196 186 ENLerLEDILGELErqleplerqaEKAERYRELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 393 QKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQD-KSKEAECKALQAEVQKLKNS 471
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEElAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 472 LEEAKQQERLAGEAPAAQQAAQCKEEAALAGC---------HLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSM 542
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAeeeleelaeELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 543 AEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKcKLEEDLQEATKLLE 622
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA-ARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 623 DKREQLKKS--------------------KEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 682
Cdd:COG1196 505 GFLEGVKAAlllaglrglagavavligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 683 SSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALqkekhyLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTS 762
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL------LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 763 ETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRgfHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLA 842
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL--LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580
....*....|....*....|....*.
gi 767990634 843 AKEEQLREFQEEMAALKENLLEDDKE 868
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDL 762
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
151-865 |
1.83e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 151 ENTGEKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLEcQVKMLQGELGGIMGQEPENKGDHSKVRIYTspc 230
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKA-ELRELELALLVLRLEELREELEELQEELKE--- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 231 MIQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALV---------LEREKALIK-----LQADFASCTATHRYPPS 296
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyalaneisrLEQQKQILRerlanLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 297 SSEECED----IKKILKHLQEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIE 369
Cdd:TIGR02168 331 KLDELAEelaeLEEKLEELKEELESLEAELEELEAELEELEsrlEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 370 RKDKDITILQCRLQELQLEFTETQKLTLKKDkfLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQcmaTELEMTVKEAK 449
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAE---QALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 450 QDKSKEAECKALQAEVQKLKNSL-EEAKQQERLAGEAPAAQQAAQCKE------EAALAGcHLE--------------DT 508
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEGVkALLKNQSGLSGILGVLSELISVDEgyeaaiEAALGG-RLQavvvenlnaakkaiAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 509 QRKLQKG----LLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEEL----------SLELSEALRKLENSDKE 574
Cdd:TIGR02168 565 LKQNELGrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 575 KR--QLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALR---QEF 649
Cdd:TIGR02168 645 YRivTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkelEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 650 KKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQkekhylQT 729
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE------EL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 730 TITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLrgfhqES 809
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL-----ES 873
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 810 ELEVH-------------------AFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLED 865
Cdd:TIGR02168 874 ELEALlnerasleealallrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
526-859 |
1.51e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 526 IQELQRELQMLQKESSMAEKEQTSNRKRVEelsLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGS 605
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 606 IKCKLEEDLQEATKLLEDKREQLKKskeheklmegELEALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSL 685
Cdd:TIGR02169 270 IEQLLEELNKKIKDLGEEEQLRVKE----------KIGELEAEIASLERSIAEKERELEDAEERLA--------KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 686 NKYntsQQVIQDLNKEIALQKESLMSLQAQLdKALQKEKHYLQTTItkeayDALSRKSAACQDDLTQALEKLNHVTSETK 765
Cdd:TIGR02169 332 DKL---LAEIEELEREIEEERKRRDKLTEEY-AELKEELEDLRAEL-----EEVDKEFAETRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 766 SLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKE 845
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
330
....*....|....
gi 767990634 846 EQLREFQEEMAALK 859
Cdd:TIGR02169 483 KELSKLQRELAEAE 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
236-868 |
3.36e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 236 QETQKRLSEVWQKVSQQDDLIQELRNKLacsNALVLEREKAlIKLQAdfasctathryppsSSEECEDIKKIL-----KH 310
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQL---KSLERQAEKA-ERYKE--------------LKAELRELELALlvlrlEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 311 LQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREE---TSAHIERKDKDITILQCRLQELQL 387
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 388 EFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNsllkkekelekqQCMATELEMTVKEAKQDKSKEAEcKALQAEVQK 467
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKE------------ELESLEAELEELEAELEELESRL-EELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 468 LKNSLEEAKQQERLAgeapaaqqaaqcKEEAALAGCHLEDTQRKLQK-----GLLLDKQKADTIQELQRELQMLQKESSM 542
Cdd:TIGR02168 384 LRSKVAQLELQIASL------------NNEIERLEARLERLEDRRERlqqeiEELLKKLEEAELKELQAELEELEEELEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 543 AEKEQTSNRKRVEELSLELSEALRKLensDKEKRQLQKTVAEQDMkMNDMLDRIkhqhreqgsikckleEDLQEATKLLE 622
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQAL---DAAERELAQLQARLDS-LERLQENL---------------EGFSEGVKALL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 623 DKREQLkkSKEHEKLmeGELEALRQEFKK-KDKTLKENSRKLEEENENlrAELQCCSTQLESSLNKYN------TSQQVI 695
Cdd:TIGR02168 513 KNQSGL--SGILGVL--SELISVDEGYEAaIEAALGGRLQAVVVENLN--AAKKAIAFLKQNELGRVTflpldsIKGTEI 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 696 QDLNKEIALQKESLMSLQAQLDK--------------------------ALQKEKHYLQTTITKEAYDALSRKSAACQDD 749
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKfdpklrkalsyllggvlvvddldnalELAKKLRPGYRIVTLDGDLVRPGGVITGGSA 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 750 LTQAleKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQ 829
Cdd:TIGR02168 667 KTNS--SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
650 660 670
....*....|....*....|....*....|....*....
gi 767990634 830 WQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 868
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
403-763 |
7.06e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 7.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 403 LQEKDEMLQELEKKLTQVQNSllkkekelekqqcmATELEMTVKEAKQDKSkeaeckALQAEVQKLKNSLEEAKQQERLA 482
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEK--------------IAELEKALAELRKELE------ELEEELEQLRKELEELSRQISAL 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 483 GEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLD---------KQKADTIQELQRELQMLQKESSMAEKEQTSNRKR 553
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEErleeaeeelAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 554 VEELSLELSEALRKLENSDKEKRQLQKTV---AEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKK 630
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLedlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 631 SKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQ----DLNKEIALQK 706
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEalenKIEDDEEEAR 971
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767990634 707 ESLMSLQAQLDK-------ALQKEKHYlqttitKEAYDALSRKsaacQDDLTQALEKLNHVTSE 763
Cdd:TIGR02168 972 RRLKRLENKIKElgpvnlaAIEEYEEL------KERYDFLTAQ----KEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
363-686 |
4.19e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 363 ETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELE 442
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 443 MTVKEAKQDKSKEAEckALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAqcKEEAALAGCHLEDTQRKLQKGLLLDKQK 522
Cdd:TIGR02168 754 KELTELEAEIEELEE--RLEEAEEELAEAEAEIEELEAQIEQLKEELKAL--REALDELRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 523 ADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhre 602
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR----- 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 603 qgsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 682
Cdd:TIGR02168 905 ------ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
....
gi 767990634 683 SSLN 686
Cdd:TIGR02168 979 NKIK 982
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
507-868 |
1.33e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 507 DTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSlELSEALRKLEN---SDKEKRQLQKTVA 583
Cdd:COG4913 593 DDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEyswDEIDVASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 584 EQDmkmnDMLDRIkhqhrEQGSIKCK-LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEfkkkdktLKENSRK 662
Cdd:COG4913 672 ELE----AELERL-----DASSDDLAaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-------LDELQDR 735
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 663 LEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKekhYlqttitKEAYDALSRK 742
Cdd:COG4913 736 LEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA---F------NREWPAETAD 806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 743 SAACQDDLTQALEKLNHVTSE-----TKSLQQSLTQTQEKK-----AQLEEEIIAYEERMKKLNTELRKLRgFHQESELE 812
Cdd:COG4913 807 LDADLESLPEYLALLDRLEEDglpeyEERFKELLNENSIEFvadllSKLRRAIREIKERIDPLNDSLKRIP-FGPGRYLR 885
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 767990634 813 VHAFDKKLEEmscqVLQ-WQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 868
Cdd:COG4913 886 LEARPRPDPE----VREfRQELRAVTSGASLFDEELSEARFAALKRLIERLRSEEEE 938
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
233-805 |
1.49e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.00 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 233 QEHQETQKRLSevwQKVSQQDDLIQELRNKL------------ACSNALVLEREKALIKLQADFASCTATHRYPPSSSEE 300
Cdd:pfam12128 279 EERQETSAELN---QLLRTLDDQWKEKRDELngelsaadaavaKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 301 CEDIKKILKHLQE-QKDSQclhvEEYQnlvkdlRVELEAVSEQKRnimkdmmklelDLHGLREETSAHIERKDKDITILQ 379
Cdd:pfam12128 356 LENLEERLKALTGkHQDVT----AKYN------RRRSKIKEQNNR-----------DIAGIKDKLAKIREARDRQLAVAE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 380 CRLQELQ-----------LEFTETQ---KLTLKKDKFLQekDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTV 445
Cdd:pfam12128 415 DDLQALEselreqleagkLEFNEEEyrlKSRLGELKLRL--NQATATPELLLQLENFDERIERAREEQEAANAEVERLQS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 446 KEAKQDKSKEAECKALQ---AEVQKLKNSLEEAKQQ-------------------ERLAGEAPAAQQAAQC--------- 494
Cdd:pfam12128 493 ELRQARKRRDQASEALRqasRRLEERQSALDELELQlfpqagtllhflrkeapdwEQSIGKVISPELLHRTdldpevwdg 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 495 --KEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSD 572
Cdd:pfam12128 573 svGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNAR 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 573 KEKRQLQKTVAEQDMKMNDMLDRIKHQHREQ-GSIKCKLEEDLQEATKLLEDKREQLkksKEHEKLMEGELEALRQEFKK 651
Cdd:pfam12128 653 LDLRRLFDEKQSEKDKKNKALAERKDSANERlNSLEAQLKQLDKKHQAWLEEQKEQK---REARTEKQAYWQVVEGALDA 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 652 KDKTLKEnsrKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQT-T 730
Cdd:pfam12128 730 QLALLKA---AIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETwL 806
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 731 ITKEAYDALSRKSAACQDDLTQALEKLnhvTSETKSlqqsltqtqeKKAQLEEEIIAYEERMKKLNTELRKLRGF 805
Cdd:pfam12128 807 QRRPRLATQLSNIERAISELQQQLARL---IADTKL----------RRAKLEMERKASEKQQVRLSENLRGLRCE 868
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
237-722 |
2.57e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 237 ETQKRLSEVWQKVSQQDDLIQELR-----------------NKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSE 299
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELReeleklekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 300 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDIT 376
Cdd:PRK03918 277 ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELReieKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 377 ILQCRLQELQ-LEFTETQKLTLKKDKFLQEKDE---MLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDK 452
Cdd:PRK03918 356 ELEERHELYEeAKAKKEELERLKKRLTGLTPEKlekELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 453 SKEAECKAL-------------QAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQ---KGL 516
Cdd:PRK03918 436 GKCPVCGRElteehrkelleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEeklKKY 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 517 LLDKQKADT--IQELQRELQMLQKESSMAEKEQtsnrKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLD 594
Cdd:PRK03918 516 NLEELEKKAeeYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 595 R----IKHQHREQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTL-KENSRKLEEENEN 669
Cdd:PRK03918 592 ErlkeLEPFYNEYLELK-DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLE 670
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 767990634 670 LRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQaQLDKALQK 722
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE-KLEKALER 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
448-707 |
3.44e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 448 AKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEApaaqqaaqckeeaalagchLEDTQRKLqkgllldKQKADTIQ 527
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ-------------------LAALERRI-------AALARRIR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 528 ELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALR---KLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQG 604
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRalyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 605 sikckleEDLQEATKLLEDKREQLKKSKEheklmegELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESS 684
Cdd:COG4942 153 -------EELRADLAELAALRAELEAERA-------ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
250 260
....*....|....*....|...
gi 767990634 685 LNKYNTSQQVIQDLNKEIALQKE 707
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAE 241
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
391-823 |
3.65e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 391 ETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEmtvKEAKQDKSKEAECKALQAEVQK--- 467
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK---KKAEEDKKKADELKKAAAAKKKade 1422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 468 LKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGcHLEDTQRKLQkglllDKQKADTIQ---ELQRELQMLQKESSMAE 544
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAE-----EAKKADEAKkkaEEAKKADEAKKKAEEAK 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 545 KEQTSNRKRVEElsLELSEALRKLENSDK--EKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLE 622
Cdd:PTZ00121 1497 KKADEAKKAAEA--KKKADEAKKAEEAKKadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 623 DKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKleEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEI 702
Cdd:PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK--AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 703 ALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLE 782
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 767990634 783 EEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEM 823
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
232-724 |
6.70e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 6.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 232 IQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHL 311
Cdd:PRK03918 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 312 QEQKDSQCLHVEEYQNLVKDLR---VELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDITILQCRLQELQ-L 387
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELReieKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLEELEERHELYEeA 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 388 EFTETQKLTLKKDKFLQEKDE---MLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAE 464
Cdd:PRK03918 368 KAKKEELERLKKRLTGLTPEKlekELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 465 VQKLKNSLEEAKQQERLAGEAPAAQQaaqcKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAE 544
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEE----KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 545 KEQTSNrkrVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLE-- 622
Cdd:PRK03918 524 AEEYEK---LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpf 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 623 --------DKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLE--------EENENLRAELqccsTQLESSLN 686
Cdd:PRK03918 601 yneylelkDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEelekkyseEEYEELREEY----LELSRELA 676
|
490 500 510
....*....|....*....|....*....|....*...
gi 767990634 687 KYNTSQQVIQDLNKEIalqKESLMSLQAQLDKALQKEK 724
Cdd:PRK03918 677 GLRAELEELEKRREEI---KKTLEKLKEELEEREKAKK 711
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
333-782 |
9.54e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 333 RVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERK----DKD----ITILQCRlQELQLEFTETQKLtlkkDKFLQ 404
Cdd:pfam15921 362 RTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNkrlwDRDtgnsITIDHLR-RELDDRNMEVQRL----EALLK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 405 E-KDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQ-ERLA 482
Cdd:pfam15921 437 AmKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAiEATN 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 483 GEAPAAQQAAQCK----EEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQ-MLQ------KESSMAEKEQTSNR 551
Cdd:pfam15921 517 AEITKLRSRVDLKlqelQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQlvgqhgRTAGAMQVEKAQLE 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 552 KRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKckleedlQEATKLLEdkreQLKKS 631
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK-------QERDQLLN----EVKTS 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 632 KEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMS 711
Cdd:pfam15921 666 RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDA 745
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767990634 712 LQAQ---LDKAL---QKEKHYLQttitkeaydalSRKSAACQDDLTQALEKlNHVTSETKSLQQSLTQTQEKKAQLE 782
Cdd:pfam15921 746 LQSKiqfLEEAMtnaNKEKHFLK-----------EEKNKLSQELSTVATEK-NKMAGELEVLRSQERRLKEKVANME 810
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
523-745 |
9.67e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 9.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 523 ADT-IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHR 601
Cdd:COG3883 14 ADPqIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 602 ---EQGSIKCKLE-----EDLQEATklleDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAE 673
Cdd:COG3883 94 alyRSGGSVSYLDvllgsESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767990634 674 LQccstQLESSLNKYntsQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAA 745
Cdd:COG3883 170 KA----ELEAQQAEQ---EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
560-801 |
1.29e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 560 ELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreqgsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLME 639
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 640 GELEALRQEFKKKDKTLKENSRKLEEENENLRAEL---QCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQL 716
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 717 DKALQKEKHYLQTtiTKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLN 796
Cdd:COG4942 170 EAERAELEALLAE--LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*
gi 767990634 797 TELRK 801
Cdd:COG4942 248 FAALK 252
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
625-868 |
1.52e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 625 REQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAelqcCSTQLESSLNKYNTSQQVIQDLNKEIAL 704
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 705 QKESLMSLQAQLDKaLQKEKHYLQTTITK--EAYDALSRKSAACQ-DDLTQALEKLNHVTSE----TKSLQQSLTQTQEK 777
Cdd:TIGR02169 749 LEQEIENVKSELKE-LEARIEELEEDLHKleEALNDLEARLSHSRiPEIQAELSKLEEEVSRiearLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 778 KAQLEEEI--------------IAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQH---QNDLKM 840
Cdd:TIGR02169 828 KEYLEKEIqelqeqridlkeqiKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLrelERKIEE 907
|
250 260
....*....|....*....|....*...
gi 767990634 841 LAAKEEQLREFQEEMAALKENLLEDDKE 868
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
505-719 |
1.53e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 505 LEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAE 584
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 585 QDMKMNDMLDRIkHQHREQGSIKCKLEED-----------LQEATKLLEDKREQLKKSKEheklmegELEALRQEFKKKD 653
Cdd:COG4942 102 QKEELAELLRAL-YRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELRADLA-------ELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767990634 654 KTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKA 719
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
133-802 |
1.57e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 133 KLKEDEVILYEEEMGNHNENTGEKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLECQVKMLQGELGGIMGQ 212
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 213 EPEnkgdhskvriytspcMIQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQadfasctathr 292
Cdd:COG1196 297 LAR---------------LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE----------- 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 293 yppsssEECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKD 372
Cdd:COG1196 351 ------EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 373 KDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDK 452
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 453 SKEAECKALQAEVQKLKNSLEEAkqqeRLAGEAPAAQQAAQCKEEAALAGCHLEDTQRkLQKGLLLDKQKADTIQELQRE 532
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVA----VLIGVEAAYEAALEAALAAALQNIVVEDDEV-AAAAIEYLKAAKAGRATFLPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 533 LQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLensdkekRQLQKTVAEQDmkmndmldRIKHQHREQGSIKCKLEE 612
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARY-------YVLGDTLLGRT--------LVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 613 DLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAElqccstQLESSLNKYNTSQ 692
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE------ERELAEAEEERLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 693 QVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKsaacQDDLTQALEKLNHV----TSETKSLQ 768
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE----LERLEREIEALGPVnllaIEEYEELE 794
|
650 660 670
....*....|....*....|....*....|....
gi 767990634 769 QSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKL 802
Cdd:COG1196 795 ERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
302-862 |
1.57e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 302 EDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAvSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCR 381
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEE-SRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQR 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 382 LQELQLEFTETQKLTLKKDKFLQEKDEMLQElekKLTQVQNSLLKKEKELEKQQCMATELEMTvkEAKQDKSKEAECKAL 461
Cdd:pfam05483 308 SMSTQKALEEDLQIATKTICQLTEEKEAQME---ELNKAKAAHSFVVTEFEATTCSLEELLRT--EQQRLEKNEDQLKII 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 462 QAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALagchleDTQRKLQKgllLDKQKADTIQELQRELQMLQKESS 541
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLL------DEKKQFEK---IAEELKGKEQELIFLLQAREKEIH 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 542 MAEKEQTSNRKRVEELSLELSEALRKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKcKLEEDLQEATKLL 621
Cdd:pfam05483 454 DLEIQLTAIKTSEEHYLKEVEDLKTELEK---EKLKNIELTAHCDKLLLENKELTQEASDMTLELK-KHQEDIINCKKQE 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 622 EDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKE 701
Cdd:pfam05483 530 ERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 702 I-ALQKEslmslqaqlDKALQKekhylQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQ 780
Cdd:pfam05483 610 IeELHQE---------NKALKK-----KGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 781 LEEEIIAYEERMKKLNTELrKLRGFHQESEL------EVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEE 854
Cdd:pfam05483 676 EVEKAKAIADEAVKLQKEI-DKRCQHKIAEMvalmekHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAE 754
|
....*...
gi 767990634 855 MAALKENL 862
Cdd:pfam05483 755 LLSLKKQL 762
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
323-860 |
2.01e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 323 EEYQNLVKDLRVELEAVSEQKRNIMKDMM-----KLELDLHglreETSAHIERKDKDITIlqcrlqelQLEFTETQKLTL 397
Cdd:PRK02224 165 EEYRERASDARLGVERVLSDQRGSLDQLKaqieeKEEKDLH----ERLNGLESELAELDE--------EIERYEEQREQA 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 398 KKDKflQEKDEMLQELEKKLTQVQnsllkkekelekqqcmatELEMTVKEAKQDKSK-EAECKALQAEVQKLKNSLEEak 476
Cdd:PRK02224 233 RETR--DEADEVLEEHEERREELE------------------TLEAEIEDLRETIAEtEREREELAEEVRDLRERLEE-- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 477 qqerLAGEApaaqqaaqckeEAALAGCHLEDTQRKLQKGLLLDKQKADTiqELQRELQMLQKESSMAEKEQTSNRKRVEE 556
Cdd:PRK02224 291 ----LEEER-----------DDLLAEAGLDDADAEAVEARREELEDRDE--ELRDRLEECRVAAQAHNEEAESLREDADD 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 557 LSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIkcklEEDLQEATKLLEDKREQLKKSKEHEK 636
Cdd:PRK02224 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDA----PVDLGNAEDFLEELREERDELREREA 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 637 LMEGELEALRQEFKKKDKTL------------------------KENSRKLEEENENLRAE-------------LQCCST 679
Cdd:PRK02224 430 ELEATLRTARERVEEAEALLeagkcpecgqpvegsphvetieedRERVEELEAELEDLEEEveeveerleraedLVEAED 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 680 QLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDK--ALQKEKHYLQTTITKEAYDALSRkSAACQDDLT------ 751
Cdd:PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleAEAEEKREAAAEAEEEAEEAREE-VAELNSKLAelkeri 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 752 QALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKK-----LEEMSCQ 826
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraeeyLEQVEEK 668
|
570 580 590
....*....|....*....|....*....|....*..
gi 767990634 827 VLQWQKQH---QNDLKMLAAKEEQLREFQEEMAALKE 860
Cdd:PRK02224 669 LDELREERddlQAEIGAVENELEELEELRERREALEN 705
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
381-867 |
2.07e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 381 RLQELQLEFTETQKLTLKKDKFLQEKdemLQELEKKLTQVQNSLLK----KEKELEKQQCMATELEMTVKEAKQDKS-KE 455
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQS---VIDLQTKLQEMQMERDAmadiRRRESQSQEDLRNQLQNTVHELEAAKClKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 456 AECKALQAEVQKLKN---SLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLL-LDKQKA---DTIQE 528
Cdd:pfam15921 163 DMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILReLDTEISylkGRIFP 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 529 LQRELQMLQKESS-----MAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQ---KTVAEQDMKMNDMLDRikhQH 600
Cdd:pfam15921 243 VEDQLEALKSESQnkielLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQsqlEIIQEQARNQNSMYMR---QL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 601 REQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQ 680
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 681 LESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLdkalqkekhylqTTITKEAYDALSRKSAACQDDlTQALEKLNHV 760
Cdd:pfam15921 400 NKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL------------KAMKSECQGQMERQMAAIQGK-NESLEKVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 761 TSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELrklrgfhQESELEVHAFDKKLEEMSCQV-LQWQkqhqnDLK 839
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASL-------QEKERAIEATNAEITKLRSRVdLKLQ-----ELQ 534
|
490 500
....*....|....*....|....*...
gi 767990634 840 MLAAKEEQLREFQEEMAALKENLLEDDK 867
Cdd:pfam15921 535 HLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
519-868 |
2.61e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 519 DKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELS---EALRKLENSDKEKRQLQKTVAEQDMKMNDMLDR 595
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 596 IKHQHREQGSIKCKLEEDLQEA------TKLLEDKREQLKKSKE--HEKLMEGELEAlrQEFKKKDKTLKENSRKLEEEN 667
Cdd:PRK02224 281 VRDLRERLEELEEERDDLLAEAglddadAEAVEARREELEDRDEelRDRLEECRVAA--QAHNEEAESLREDADDLEERA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 668 ENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIAlqkeslmSLQAQLDKAlqkekhylqttitKEAYDALSRKSAACQ 747
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIE-------ELRERFGDA-------------PVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 748 DDLTQALEKLNHVTSETKSLQQSLTQTQE--------------KKAQLEEEIIAYEERMKKLNTELRKLRGFHQESElEV 813
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVE-ER 497
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 814 HAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 868
Cdd:PRK02224 498 LERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
516-719 |
2.89e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 516 LLLDKQKADTIQELQrELQMLQKESsMAEKEQTSNRKRVEELSLELSEALRKLEN------------SDKEKRQLQKTVA 583
Cdd:PRK05771 12 VTLKSYKDEVLEALH-ELGVVHIED-LKEELSNERLRKLRSLLTKLSEALDKLRSylpklnplreekKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 584 EQDMKMNDMLDRIKHQHREQGSIKCK---LEEDLQEATKL----LEDKREQLKKS------------------------- 631
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEISELENEikeLEQEIERLEPWgnfdLDLSLLLGFKYvsvfvgtvpedkleelklesdvenv 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 632 -----------------KEHEKLMEGELEALrqEFKKKD----KTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNT 690
Cdd:PRK05771 170 eyistdkgyvyvvvvvlKELSDEVEEELKKL--GFERLEleeeGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250 260
....*....|....*....|....*....
gi 767990634 691 SQQVIQDLNkEIALQKESLMSLQAQLDKA 719
Cdd:PRK05771 248 ELLALYEYL-EIELERAEALSKFLKTDKT 275
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
242-868 |
3.00e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 242 LSEVWQKVSQQDDLIQELRNKLacsNALVLEREKAL--IKLQADFASCTATHRyppssSEECEDIKKILKHLQEQKDSQC 319
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQL---ERLRREREKAEryQALLKEKREYEGYEL-----LKEKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 320 LHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKL----ELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKL 395
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 396 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQdkskeaECKALQAEVQKLKNSLEEA 475
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD------ELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 476 KQQERLAGEAPAAQQAAQCKEEAALAGchLEDTQRKLQKGLlldKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVE 555
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAG--IEAKINELEEEK---EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 556 ELSLELSEALRKLENSDKEKRQLQKTVAE---QDMKMNDMLDRIKHQHREQGSIKCKL-------------------EED 613
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGgraVEEVLKASIQGVHGTVAQLGSVGERYataievaagnrlnnvvvedDAV 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 614 LQEATKLLEDKR--------------EQLKKSKEHEK---------------------------LMEGELEALRQEFKK- 651
Cdd:TIGR02169 560 AKEAIELLKRRKagratflplnkmrdERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtLVVEDIEAARRLMGKy 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 652 ---------------------KDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLM 710
Cdd:TIGR02169 640 rmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 711 SLQAQLDKALQKEKhylqttitkeaydalsrksaacqddltQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEE 790
Cdd:TIGR02169 720 EIEKEIEQLEQEEE---------------------------KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 791 -------------------RMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREF 851
Cdd:TIGR02169 773 dlhkleealndlearlshsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
730
....*....|....*..
gi 767990634 852 QEEMAALKENLLEDDKE 868
Cdd:TIGR02169 853 EKEIENLNGKKEELEEE 869
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
516-674 |
3.17e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 516 LLLDKQKADT-IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEA---LRKLENSDKEKRQLQKTVAEQDMK--- 588
Cdd:COG1579 8 ALLDLQELDSeLDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLekeIKRLELEIEEVEARIKKYEEQLGNvrn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 589 ---MNDMLDRIKHQHREQGsikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEE 665
Cdd:COG1579 88 nkeYEALQKEIESLKRRIS----DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*....
gi 767990634 666 ENENLRAEL 674
Cdd:COG1579 164 EREELAAKI 172
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
327-802 |
3.36e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 3.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 327 NLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLrEETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEK 406
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKL-ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 407 DEMLQELEKKLTQVQNSllkkekelekQQCMATELEMTVKEAKQDKSKeaeCKALQAEVQKLKNSLEEAKQQErlageap 486
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDE----------QNKIKKQLSEKQKELEQNNKK---IKELEKQLNQLKSEISDLNNQK------- 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 487 AAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALR 566
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 567 KLENSDKEKRQLQKTVAEQDmKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALR 646
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQE-KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 647 QEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLD------KAL 720
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKekeskiSDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 721 QKEKHYLQTTITKEAY-----------DALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYE 789
Cdd:TIGR04523 544 EDELNKDDFELKKENLekeideknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
490
....*....|...
gi 767990634 790 ERMKKLNTELRKL 802
Cdd:TIGR04523 624 KENEKLSSIIKNI 636
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
300-740 |
4.38e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 300 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAV---SEQKRNIMKDMMKLElDLHGLREETSAHIERKDKDIT 376
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkaDEAKKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 377 ILQCrlQELQLEFTETQKLTLKKDKflQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQcmATELEMTVKEAKQD----- 451
Cdd:PTZ00121 1430 KKKA--DEAKKKAEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK--ADEAKKKAEEAKKKadeak 1503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 452 KSKEAECKALQAEVQKLKNSLEEAKQQE--------RLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKA 523
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEeakkadeaKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 524 DTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQ 603
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 604 GSIKCKLEED---LQEATKLLEDKR---EQLKKSKEHEKLMEgELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 677
Cdd:PTZ00121 1664 AEEAKKAEEDkkkAEEAKKAEEDEKkaaEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767990634 678 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEAYDALS 740
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
639-857 |
4.99e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 639 EGELEALRQEFKKKDKTLKENSRKLEEENEnlraelqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQ---AQ 715
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLK-----------QLAALERRIAALARRIRALEQELAALEAELAELEkeiAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 716 LDKALQKEKHYLQTTItKEAYDALSRKSAAC---QDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERM 792
Cdd:COG4942 95 LRAELEAQKEELAELL-RALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 793 KKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQvlqwQKQHQNDLKMLAAKEEQLREFQEEMAA 857
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKE----LAELAAELAELQQEAEELEALIARLEA 234
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
640-864 |
5.55e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.99 E-value: 5.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 640 GELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstQLEsslnkYNTSQqvIQDLNkEIALQKESLMSLQAQLDKA 719
Cdd:COG0497 151 AGLEELLEEYREAYRAWRALKKELEELRADEAERAR----ELD-----LLRFQ--LEELE-AAALQPGEEEELEEERRRL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 720 LQKEKhyLQTTITkEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEE---EIIAY-------- 788
Cdd:COG0497 219 SNAEK--LREALQ-EALEALSGGEGGALDLLGQALRALERLAEYDPSLAELAERLESALIELEEaasELRRYldslefdp 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 789 ------EERMKKLNTELRKlrgfHQESelevhafdkkLEEmscqVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENL 862
Cdd:COG0497 296 erleevEERLALLRRLARK----YGVT----------VEE----LLAYAEELRAELAELENSDERLEELEAELAEAEAEL 357
|
..
gi 767990634 863 LE 864
Cdd:COG0497 358 LE 359
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
505-703 |
5.95e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 505 LEDTQRKLQkgLLLD-KQKADTIQELQRELQMLQKESSMAEKEQtsNRKRVEELSLELSEALRKLENSDKEKRQLQKTVA 583
Cdd:COG4913 244 LEDAREQIE--LLEPiRELAERYAAARERLAELEYLRAALRLWF--AQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 584 EQDmkmnDMLDRIKHQHREQGSIKCK-LEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFkkkdktlKENSRK 662
Cdd:COG4913 320 ALR----EELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEALLAALGLPLPASAEEF-------AALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 767990634 663 LEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIA 703
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
439-854 |
8.35e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 439 TELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLL 518
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 519 DKQKADTIQELQRELQMLQKESSMAEKE--------QTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMN 590
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEEleelleqlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 591 DMLDRIKHQHREQ---------------------------------------GSIKCKLEEDLQEATKLLEDKREQLKKS 631
Cdd:COG4717 231 QLENELEAAALEErlkearlllliaaallallglggsllsliltiagvlflvLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 632 KEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMS 711
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ--------ELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 712 LQAQLDKALQKekhylqttitKEAYDALSRKSAACQDDLTQALEKLNHV--TSETKSLQQSLTQTQEKKAQLEEEIIAYE 789
Cdd:COG4717 383 DEEELRAALEQ----------AEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELR 452
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 790 ERMKKLNTELRKLRGFHQESELEvHAFDKKLEEMSCQVLQWQKqhqndLKMLAAKEEQLREFQEE 854
Cdd:COG4717 453 EELAELEAELEQLEEDGELAELL-QELEELKAELRELAEEWAA-----LKLALELLEEAREEYRE 511
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
520-859 |
9.02e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 9.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 520 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQL---QKTVAEQDMKMNDMLDRI 596
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELeneLNLLEKEKLNIQKNIDKI 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 597 KHQHREQGSIKCKLEEDLQEATKL------LEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENL 670
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLesqiseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 671 RAELQCCSTQLESSLNKYNTSQQVIQDLNKEiaLQKESLMSLQAQLDKaLQKEKHYLQTTITKEaydalSRKSAACQDDL 750
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKN-QEKKLEEIQNQISQN-----NKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 751 TQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQW 830
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
330 340
....*....|....*....|....*....
gi 767990634 831 QKQHQNDLKMLAAKEEQLREFQEEMAALK 859
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
510-785 |
1.02e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 510 RKLQKGLL-------LDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTV 582
Cdd:PHA02562 153 RKLVEDLLdisvlseMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 583 AEQDMKMNDMLDRIKHQhreqgsikcklEEDLQEATKLLEDKREQLKK-----SKEHEKLMEG-ELEALRQEFKKKDKTL 656
Cdd:PHA02562 233 KAEIEELTDELLNLVMD-----------IEDPSAALNKLNTAAAKIKSkieqfQKVIKMYEKGgVCPTCTQQISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 657 KENSRKLEEENENLRaELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQldkalqkekhylqttiTKEAY 736
Cdd:PHA02562 302 TKIKDKLKELQHSLE-KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDK----------------AKKVK 364
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 767990634 737 DALSRKSAACQDDltqaleklnhvTSETKSLQQSLTQTQEKKAQLEEEI 785
Cdd:PHA02562 365 AAIEELQAEFVDN-----------AEELAKLQDELDKIVKTKSELVKEK 402
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
621-868 |
1.18e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 621 LEDKREQLKKSKEHEKLMEGELEALRQEFKK--KDKTLKENSRKLEEENENLRAELQccstqlessLNKYNTSQQVIQDL 698
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERlrREREKAERYQALLKEKREYEGYEL---------LKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 699 NKEIALQKESLMSLQAQLDKalqkekhylqttitkeaydaLSRKSAACQDDLTQALEKLNHVTS-ETKSLQQSLTQTQEK 777
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISE--------------------LEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 778 KAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAA 857
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250
....*....|.
gi 767990634 858 LKENLLEDDKE 868
Cdd:TIGR02169 383 TRDELKDYREK 393
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
563-824 |
1.27e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.05 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 563 EALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCkLEEDLQEATKLLEDKRE-----------QLKKS 631
Cdd:PLN02939 153 QALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEI-LEEQLEKLRNELLIRGAteglcvhslskELDVL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 632 KEHEKLMEGELEALRQEFKKKDKTlKENSRKLEEENENLRAELQccstQLESslnKYNTSQQviqDLNKEIALQKESLM- 710
Cdd:PLN02939 232 KEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLR----ELES---KFIVAQE---DVSKLSPLQYDCWWe 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 711 ---SLQAQLDKALQKEKHYLQTtitkeaydaLSRksaacQDDLTQALEKLNHVTSETKSLQQSLtqtqEKKAQLEEEIIA 787
Cdd:PLN02939 301 kveNLQDLLDRATNQVEKAALV---------LDQ-----NQDLRDKVDKLEASLKEANVSKFSS----YKVELLQQKLKL 362
|
250 260 270
....*....|....*....|....*....|....*..
gi 767990634 788 YEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMS 824
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEES 399
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
321-868 |
1.50e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 321 HVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKD 400
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 401 KFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQER 480
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 481 LAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNR---KRVEEL 557
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDElelKKSEDL 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 558 SLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKL 637
Cdd:pfam02463 474 LKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 638 MEGELEAL-RQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQL 716
Cdd:pfam02463 554 SATADEVEeRQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 717 DKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEE---EIIAYEERMK 793
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEikkKEQREKEELK 713
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 794 KLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMAALKENLLEDDKE 868
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKV 788
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
292-417 |
1.70e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 292 RYPPSSSEECEDIKKILKHLQEQkdsqclhVEEYQNLVKDLRVELEavsEQKRNImkdmMKLELDLHGLREETSAHIeRK 371
Cdd:COG2433 399 REKEHEERELTEEEEEIRRLEEQ-------VERLEAEVEELEAELE---EKDERI----ERLERELSEARSEERREI-RK 463
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 767990634 372 DKDITILQCRLQELQLEftetqkltlkkdkfLQEKDEMLQELEKKL 417
Cdd:COG2433 464 DREISRLDREIERLERE--------------LEEERERIEELKRKL 495
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
528-863 |
2.16e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 528 ELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMK-------MNDMLDRIKHQH 600
Cdd:TIGR01612 513 ELYKPDEVPSKNIIGFDIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDsihlekeIKDLFDKYLEID 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 601 REQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELqccSTQ 680
Cdd:TIGR01612 593 DEIIYIN-KLKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL---SKI 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 681 LESSLNK-YNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKekhyLQTTITKEAYDALSRKSAACQDDLTQALEKLNH 759
Cdd:TIGR01612 669 YEDDIDAlYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDK----IQNMETATVELHLSNIENKKNELLDIIVEIKKH 744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 760 VTSE-TKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMScqvlQWQKQHQNDL 838
Cdd:TIGR01612 745 IHGEiNKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAK----QNYDKSKEYI 820
|
330 340
....*....|....*....|....*
gi 767990634 839 KMLAAKEEQLREFQEEMAALKENLL 863
Cdd:TIGR01612 821 KTISIKEDEIFKIINEMKFMKDDFL 845
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
471-666 |
2.96e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 471 SLEEA--KQQERLAGEAPAAQQAAQCKEEAalagcHLEDTQRKLQKgllLDKQkadtIQELQRELQMLQKEssMAEKEQt 548
Cdd:COG2433 377 SIEEAleELIEKELPEEEPEAEREKEHEER-----ELTEEEEEIRR---LEEQ----VERLEAEVEELEAE--LEEKDE- 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 549 snrkRVEELSLELSEALRKLENSDKEKRQLQKTVAEqdmkmNDMLDRikhqhreqgsikcKLEEdLQEATKLLEDKREQL 628
Cdd:COG2433 442 ----RIERLERELSEARSEERREIRKDREISRLDRE-----IERLER-------------ELEE-ERERIEELKRKLERL 498
|
170 180 190
....*....|....*....|....*....|....*...
gi 767990634 629 KKSkeHEKLMEGELEALrqefKKKDKTLKENSRKLEEE 666
Cdd:COG2433 499 KEL--WKLEHSGELVPV----KVVEKFTKEAIRRLEEE 530
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
520-866 |
3.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 520 KQKADTIQELQRELQMLQKESSMAEKE--QTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIK 597
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREEleKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 598 HQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 677
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 678 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTItkEAYDALSRKSAACQDDLTQALEKL 757
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA--EELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 758 NHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEmscqvlqwQKQHQND 837
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQ--------AEEYQEL 400
|
330 340
....*....|....*....|....*....
gi 767990634 838 LKMLAAKEEQLREFQEEMAALKENLLEDD 866
Cdd:COG4717 401 KEELEELEEQLEELLGELEELLEALDEEE 429
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
454-654 |
3.53e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 454 KEAECKALQAEVQKLKNSLEEAKQQERLAGEAPA--AQQAAQCKEEAALAGCH--LEDTQRKLQKgLLLD----KQKADT 525
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEreIAELEAELER-LDASsddlAALEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 526 IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQdmkmndMLDRIKHQHREQgs 605
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE------RFAAALGDAVER-- 765
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767990634 606 ikcKLEEDLQEATKLLEDKREQLkkskeheklmEGELEALRQEFKKKDK 654
Cdd:COG4913 766 ---ELRENLEERIDALRARLNRA----------EEELERAMRAFNREWP 801
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
641-813 |
4.28e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 44.28 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 641 ELEALRQEFKKKDKTLKENSRKLEEENENLRAELQccstqLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKAL 720
Cdd:pfam13166 322 DVEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE-----LDSVDAKIESINDLVASINELIAKHNEITDNFEEEKNKAK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 721 QKEKHYLQTTITKEaYDALSRKSAACQDDLTQALEKLNHVTSETKSLQqsltqtqEKKAQLEEEIIAYEERMKKLNTELR 800
Cdd:pfam13166 397 KKLRLHLVEEFKSE-IDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLR-------EEIKELEAQLRDHKPGADEINKLLK 468
|
170
....*....|...
gi 767990634 801 KLrgFHQESELEV 813
Cdd:pfam13166 469 AF--GFGELELSF 479
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
410-777 |
4.75e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 44.36 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 410 LQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQ 489
Cdd:pfam07111 72 LQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQE 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 490 QAAQCKEEAALAGCHLEDTQRKLQKGL-LLDKQKADTIQEL---QRELQMLQKESSMAEKEQtsnrkrveELSLELSEAL 565
Cdd:pfam07111 152 QLSSLTQAHEEALSSLTSKAEGLEKSLnSLETKRAGEAKQLaeaQKEAELLRKQLSKTQEEL--------EAQVTLVESL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 566 RKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCK---LEEDLQEATKLLEDKREQLKKSKEHEKLMEGE- 641
Cdd:pfam07111 224 RKYVG---EQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATvelLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEf 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 642 -------LEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQA 714
Cdd:pfam07111 301 pkkcrslLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQM 380
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767990634 715 QLDKALQKEKHYLQTTIT-KEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEK 777
Cdd:pfam07111 381 ELSRAQEARRRQQQQTASaEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRK 444
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
612-803 |
5.48e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 612 EDLQEATKLLEDKREQLK-------KSKEHEKLME--GELEALRQEFK-----KKDKTLKENSRKLEEENENLRAELQCC 677
Cdd:COG4913 235 DDLERAHEALEDAREQIEllepireLAERYAAARErlAELEYLRAALRlwfaqRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 678 STQLESSLNKYNTSQQVIQDL-NKEIALQKESLMSLQAQLDKALQKEKHY--------LQTTITKEAYDALSRKSAACQD 748
Cdd:COG4913 315 EARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLeallaalgLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 749 DLTQALEKLNhvtSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLR 803
Cdd:COG4913 395 ALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
520-922 |
6.26e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 520 KQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSlELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQ 599
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 600 HREQGSIKC--KLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCC 677
Cdd:COG4717 139 AELAELPERleELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 678 STQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEKHYLQTTITKEA-------------YDALSRKSA 744
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllallFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 745 ACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRgfHQESELEVHAFDKKLEEMs 824
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE--ELEEELQLEELEQEIAAL- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 825 cqvlqWQKQHQNDLKMLAAKEEQLREFQE---EMAALKENLLEDDKEpccLPQWSVPKDTCRLYRGNDQIMTNLEQWAKQ 901
Cdd:COG4717 376 -----LAEAGVEDEEELRAALEQAEEYQElkeELEELEEQLEELLGE---LEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420
....*....|....*....|.
gi 767990634 902 QKVANEKLGnQLREQVKYIAK 922
Cdd:COG4717 448 LEELREELA-ELEAELEQLEE 467
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
384-868 |
6.28e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 384 ELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQA 463
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 464 EVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLL----LDKQKADTIQELQRELQMLQKE 539
Cdd:TIGR00618 275 QEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMkraaHVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 540 SSMA-EKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKL---EEDLQ 615
Cdd:TIGR00618 355 IHIRdAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLahaKKQQE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 616 EATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTL--KENSRKLEEENENLRA----ELQCCSTQLESSLNKYN 689
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLqtKEQIHLQETRKKAVVLarllELQEEPCPLCGSCIHPN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 690 TSQQVIQDLNKEIALQkESLMSLQAQLDKALQKEKHYLQtTITKEAYDaLSRKSAACQDDLTQALEKLNHVTSETKSLQQ 769
Cdd:TIGR00618 515 PARQDIDNPGPLTRRM-QRGEQTYAQLETSEEDVYHQLT-SERKQRAS-LKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 770 SLTQTQEKKAQLEEeiiayEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLR 849
Cdd:TIGR00618 592 ITVRLQDLTEKLSE-----AEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
490
....*....|....*....
gi 767990634 850 EFQEEMAALKENLLEDDKE 868
Cdd:TIGR00618 667 IRVLPKELLASRQLALQKM 685
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
643-850 |
8.95e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 643 EALRQEFKKKDKTLKENSRKLEEENENLRaelqccstQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKaLQK 722
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELK--------EAEEKEEEYAELQEELEELEEELEELEAELEELREELEK-LEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 723 EKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEI-IAYEERMKKLNTELRK 801
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEE 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767990634 802 LRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNdlkmlAAKEEQLRE 850
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEA-----AALEERLKE 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
713-941 |
9.25e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 9.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 713 QAQLDKALQKEKHYLQTTI--TKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEE 790
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIaeLEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 791 RMKKLNTELRKLRG--------------FHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKEEQLREFQEEMA 856
Cdd:COG4942 98 ELEAQKEELAELLRalyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 857 ALKENLLEDDKEpcclpqwsvpkdTCRLYRGNDQIMTNLEQWAKQQKVANEKLGNQLREQVKYIAKLSGEKDREPTRASS 936
Cdd:COG4942 178 ALLAELEEERAA------------LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
....*
gi 767990634 937 PNTTR 941
Cdd:COG4942 246 AGFAA 250
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
112-614 |
1.23e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 112 RQYQSILEKQTSDLVLLHHHCKLKEDEVILYEEEMGNHNENTGE----------KLHLAQEQLALAGDKIASLERSLNLY 181
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKlladlhkrekELSLEKEQNKRLWDRDTGNSITIDHL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 182 RDKYQSSLSNIELLECQVKMLQGELGGIMGQEPEN-KGDHSKVRIYTSpcMIQEHQETQKRLSEVWQKVSQQDDLIQELR 260
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAiQGKNESLEKVSS--LTAQLESTKEMLRKVVEELTAKKMTLESSE 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 261 NKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELE--- 337
Cdd:pfam15921 496 RTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnmt 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 338 -AVSEQKRN---IMKDMMKLELDLHGLR---EETSAHIERKDKDITILQCRLQELQLEFTE-----TQKLTLKKDkFLQE 405
Cdd:pfam15921 576 qLVGQHGRTagaMQVEKAQLEKEINDRRlelQEFKILKDKKDAKIRELEARVSDLELEKVKlvnagSERLRAVKD-IKQE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 406 KDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQdkskeaECKALQAEVQKLKNSLEEAKQQERlagea 485
Cdd:pfam15921 655 RDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM------QLKSAQSELEQTRNTLKSMEGSDG----- 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 486 paaqqaaqckeeaalagcHLEDTQRKLQKGLlldKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEAL 565
Cdd:pfam15921 724 ------------------HAMKVAMGMQKQI---TAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA 782
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767990634 566 RK-------LENSDKEKRQLQKTVAEQDMKMNDMLDRIKH-----QHREQGSIKCKLEEDL 614
Cdd:pfam15921 783 TEknkmageLEVLRSQERRLKEKVANMEVALDKASLQFAEcqdiiQRQEQESVRLKLQHTL 843
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
528-782 |
1.26e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 528 ELQRELQMLQKEssmaEKEQTSNRKRVEELSLELSEaLRKLENSDKEKRQLQKTVAE-------QDMKMNDMLDRIKHQH 600
Cdd:pfam17380 345 ERERELERIRQE----ERKRELERIRQEEIAMEISR-MRELERLQMERQQKNERVRQeleaarkVKILEEERQRKIQQQK 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 601 REQGSIKCKLEEDLQEATKLLEDKREqlkksKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENEnlraelqccstq 680
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERA-----REMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE------------ 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 681 lesslnkyNTSQQVIQDLNKEIaLQKESLMSLQAQLD-----KALQKEKHYLQTTITKEAydalSRKSAACQDDLTQALE 755
Cdd:pfam17380 483 --------KRDRKRAEEQRRKI-LEKELEERKQAMIEeerkrKLLEKEMEERQKAIYEEE----RRREAEEERRKQQEME 549
|
250 260
....*....|....*....|....*..
gi 767990634 756 klnhvtsETKSLQQSLTQTQEKKAQLE 782
Cdd:pfam17380 550 -------ERRRIQEQMRKATEERSRLE 569
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
396-686 |
1.34e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 396 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEkqqCMATELEMTVKEAKQDKSKeaeckalqaeVQKLKNSLEEA 475
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFS---LKAEVLIQKFGRSLKAKKR----------FSLLKKETIYL 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 476 KQQERLAGEAPAAQQAAQCKEEAAlagcHLEDTQRKLQKGLLLDKQKADTiqELQRELQMLQKESSMAEK--------EQ 547
Cdd:COG5022 872 QSAQRVELAERQLQELKIDVKSIS----SLKLVNLELESEIIELKKSLSS--DLIENLEFKTELIARLKKllnnidleEG 945
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 548 TSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLeEDLQEATKLLEDKREQ 627
Cdd:COG5022 946 PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQY-GALQESTKQLKELPVE 1024
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 767990634 628 LKKSKEHEKLMEGELEALRQEfkkkdKTLKENSRKLEEENENLRAELQCCSTQLESSLN 686
Cdd:COG5022 1025 VAELQSASKIISSESTELSIL-----KPLQKLKGLLLLENNQLQARYKALKLRRENSLL 1078
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
299-873 |
1.73e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 299 EECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDK----- 373
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRlqeel 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 374 ------------DITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATEL 441
Cdd:TIGR02169 416 qrlseeladlnaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 442 EMTVKEAKQD----KSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQ--CKEEAALAGC------------ 503
Cdd:TIGR02169 496 EAQARASEERvrggRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNvvVEDDAVAKEAiellkrrkagra 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 504 ------HLEDTQRKLQKGLL------------LDKQKA--------DTI----QELQREL-----------QMLQKESSM 542
Cdd:TIGR02169 576 tflplnKMRDERRDLSILSEdgvigfavdlveFDPKYEpafkyvfgDTLvvedIEAARRLmgkyrmvtlegELFEKSGAM 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 543 -----AEKEQTSNRKRVEELSLELSEALRKLENsdkEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEA 617
Cdd:TIGR02169 656 tggsrAPRGGILFSRSEPAELQRLRERLEGLKR---ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 618 TKLledkREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKEnsrkLEEENENLRAELQccstQLESSLN--KYNTSQQVI 695
Cdd:TIGR02169 733 EKL----KERLEELEEDLSSLEQEIENVKSELKELEARIEE----LEEDLHKLEEALN----DLEARLShsRIPEIQAEL 800
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 696 QDLNKEIALQKESLMSLQAQLDKaLQKEKHYLqttitkeaydalsrksaacQDDLTQALEKLNHVTSETKSLQQSLTQTQ 775
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNR-LTLEKEYL-------------------EKEIQELQEQRIDLKEQIKSIEKEIENLN 860
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 776 EKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQwQKQHQNDLKmlaakeEQLREFQEEM 855
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-KRKRLSELK------AKLEALEEEL 933
|
650
....*....|....*...
gi 767990634 856 AALKENLLEDDKEPCCLP 873
Cdd:TIGR02169 934 SEIEDPKGEDEEIPEEEL 951
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
626-860 |
1.88e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 626 EQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKyntsqqvIQDLNKEIALq 705
Cdd:PHA02562 195 QQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAA-------LNKLNTAAAK- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 706 keslmsLQAQLDKaLQKEKHYLQTTITkeaydalsrkSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEI 785
Cdd:PHA02562 267 ------IKSKIEQ-FQKVIKMYEKGGV----------CPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 786 IAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMScqvlQWQKQHQNDLKMLAAKEEQLREFQEEMAALKE 860
Cdd:PHA02562 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE----ELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
237-830 |
2.48e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 237 ETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDIKKILKHLQEQK- 315
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHt 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 316 DSQCLHVEEYQnlvKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKL 395
Cdd:TIGR00618 377 LTQHIHTLQQQ---KTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQC 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 396 TLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSkEAECKALQAEVQKLKNSLEEA 475
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI-HPNPARQDIDNPGPLTRRMQR 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 476 KQQERLAGEAPAAQQAAQCKEE---AALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRK 552
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSErkqRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 553 RVEELSLELSEALRKLENS----DKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQL 628
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRlhlqQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 629 KKSKEhekLMEGELEALRQEFKKkdktlkensrklEEENENLRAELQCCSTQLESSLNKYNTSQQviQDLNKEIALQKES 708
Cdd:TIGR00618 693 TYWKE---MLAQCQTLLRELETH------------IEEYDREFNEIENASSSLGSDLAAREDALN--QSLKELMHQARTV 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 709 LMSLQAQLDKALQKEKHYLQT-TITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIA 787
Cdd:TIGR00618 756 LKARTEAHFNNNEEVTAALQTgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLS 835
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 767990634 788 YEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQW 830
Cdd:TIGR00618 836 RLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
231-674 |
2.52e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 231 MIQEHQETQKRLSEVWQKV-----------SQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTAThryppssSE 299
Cdd:PRK02224 242 VLEEHEERREELETLEAEIedlretiaeteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 300 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLhglrEETSAHIERKDKDITILQ 379
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL----EEAREAVEDRREEIEELE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 380 CRLQEL--QLEFTETQ--KLTLKKDKFLQEKDEM---LQELEKKLTQVQNSLLKKEKELEKQQCMATELEM-------TV 445
Cdd:PRK02224 391 EEIEELreRFGDAPVDlgNAEDFLEELREERDELrerEAELEATLRTARERVEEAEALLEAGKCPECGQPVegsphveTI 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 446 KEAKQDKSK-EAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAqqaaqcKEEAALAGCHLEDTQRKLQkgllldkQKAD 524
Cdd:PRK02224 471 EEDRERVEElEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL------EERREDLEELIAERRETIE-------EKRE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 525 TIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKtVAEQDMKMNDMLDRIKhqhreqg 604
Cdd:PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIE------- 609
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767990634 605 sikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKT--------LKENSRKLEEENENLRAEL 674
Cdd:PRK02224 610 ----RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraeeyleqVEEKLDELREERDDLQAEI 683
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-864 |
2.68e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 335 ELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKdkdiTILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELE 414
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEK----NALQEQLQAETELCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 415 KKLTQVQNSLLKKEKELEKQQCMATELEMTVKEAKQDKSK--------EAECKALQAEV----------QKLKNSLEE-- 474
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKlqlekvttEAKIKKLEEDIllledqnsklSKERKLLEEri 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 475 AKQQERLAGEAPAAQQAAQCKEEAALAGCHLEDTQRKLQKGLL-LDKQK----------ADTIQELQRELQMLQKESSMA 543
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQeLEKAKrklegestdlQEQIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 544 EKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEE--DLQEATKLL 621
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDtlDTTAAQQEL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 622 EDKREQ----LKKSKEHE-KLMEGELEALRQ--------------EFKKKDKTLKENSRKLEEENENLRAELQCCSTQLE 682
Cdd:pfam01576 322 RSKREQevteLKKALEEEtRSHEAQLQEMRQkhtqaleelteqleQAKRNKANLEKAKQALESENAELQAELRTLQQAKQ 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 683 SSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKaLQKEKHYLQTTitkeaydalsrksaacqddLTQALEKLNHVTS 762
Cdd:pfam01576 402 DSEHKRKKLEGQLQELQARLSESERQRAELAEKLSK-LQSELESVSSL-------------------LNEAEGKNIKLSK 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 763 ETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLA 842
Cdd:pfam01576 462 DVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLE 541
|
570 580
....*....|....*....|..
gi 767990634 843 AKEEQLREFQEEMAALKENLLE 864
Cdd:pfam01576 542 ALEEGKKRLQRELEALTQQLEE 563
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
518-722 |
2.77e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 518 LDKQKADtIQELQRELQMLQKESSM--AEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLdr 595
Cdd:COG3206 184 LPELRKE-LEEAEAALEEFRQKNGLvdLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL-- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 596 ikhqhreQGSIKCKLEEDLQEATKLLEDKREQLkkSKEHEKL--MEGELEALRQEFKKKDKTLKENSRK----LEEENEN 669
Cdd:COG3206 261 -------QSPVIQQLRAQLAELEAELAELSARY--TPNHPDViaLRAQIAALRAQLQQEAQRILASLEAeleaLQAREAS 331
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 767990634 670 LRAELQccstQLESSLNKYNTSQQVIQDLNKEIAlqkeslmSLQAQLDKALQK 722
Cdd:COG3206 332 LQAQLA----QLEARLAELPELEAELRRLEREVE-------VARELYESLLQR 373
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
271-636 |
2.88e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 271 LEREKALIKLQADFASCTA--THRYPPSSSEECEDIKKILKHLQEQKDsqclhVEEYQNLVKDLRVELEAVSEQKRNIMK 348
Cdd:pfam17380 236 MERRKESFNLAEDVTTMTPeyTVRYNGQTMTENEFLNQLLHIVQHQKA-----VSERQQQEKFEKMEQERLRQEKEEKAR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 349 DMMKLEldlhGLREETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMlQELEKKLTQVQNSLLKKE 428
Cdd:pfam17380 311 EVERRR----KLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQ-EEIAMEISRMRELERLQM 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 429 KELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAGEAPAAQQAAQCKEEAALAGCHLEdt 508
Cdd:pfam17380 386 ERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVE-- 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 509 qrKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRveelslELSEALRKLENSDKEKRQLQKTVAEQDMK 588
Cdd:pfam17380 464 --RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQ------AMIEEERKRKLLEKEMEERQKAIYEEERR 535
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 767990634 589 MNDMLDRIKHQH-REQGSIKCKLEEDLQEATKL--LEDKREQLKKSKEHEK 636
Cdd:pfam17380 536 REAEEERRKQQEmEERRRIQEQMRKATEERSRLeaMEREREMMRQIVESEK 586
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
561-743 |
3.38e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 561 LSEALRKLENSDKEKRQLQKtvaEQDMKMNDMLDRIKHQHREQGSIKcklEEDLQEATKLLEDKREQLKKSKEheklmeg 640
Cdd:PRK12705 32 AKEAERILQEAQKEAEEKLE---AALLEAKELLLRERNQQRQEARRE---REELQREEERLVQKEEQLDARAE------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 641 ELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNkyntsQQVIQDLNKEIALQKESLMSLQAQLDKAL 720
Cdd:PRK12705 99 KLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQAR-----KLLLKLLDAELEEEKAQRVKKIEEEADLE 173
|
170 180
....*....|....*....|....*
gi 767990634 721 QKEK--HYLQTTITKEAYDALSRKS 743
Cdd:PRK12705 174 AERKaqNILAQAMQRIASETASDLS 198
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
570-798 |
3.47e-03 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 41.38 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 570 NSDKEKRQLQKTVAEQDMKM-----NDMLDRIKHQHREQGSIKcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEA 644
Cdd:pfam09726 363 NSKKQKGPGGKSGARHKDPAencipNNQLSKPDALVRLEQDIK-KLKAELQASRQTEQELRSQISSLTSLERSLKSELGQ 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 645 LRQefkkkdktlkensrkleeENENLRaelqccsTQLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQKEK 724
Cdd:pfam09726 442 LRQ------------------ENDLLQ-------TKLHNAVSAKQKDKQTVQQLEKRLKAEQEARASAEKQLAEEKKRKK 496
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767990634 725 HYLQTTITKEAYDALSRKSaaCQDDLTQALEKLNhvtSETKSLQQSLTQTQEKKAQLE---EEIIAYEERMKklNTE 798
Cdd:pfam09726 497 EEEATAARAVALAAASRGE--CTESLKQRKRELE---SEIKKLTHDIKLKEEQIRELEikvQELRKYKESEK--DTE 566
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
300-794 |
3.68e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 300 ECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDMMKLELDLhglrEETSAHIERKDKDITILQ 379
Cdd:TIGR04523 219 QISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL----EQNNKKIKELEKQLNQLK 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 380 CRLQELQLEftETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMT-VKEAKQDKSKEAEC 458
Cdd:TIGR04523 295 SEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEnSEKQRELEEKQNEI 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 459 KALQAEVQKLKNSLEEAKQQerlageapaaqqaaqckeeaalagchLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQK 538
Cdd:TIGR04523 373 EKLKKENQSYKQEIKNLESQ--------------------------INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 539 ESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNdmldrikhqhreqgsikcKLEEDLQEAT 618
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN------------------KIKQNLEQKQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 619 KLLEDKREQLKKSKEHEKLMEGELealrQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLES--SLNKYNTSQQVIQ 696
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKV----KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddFELKKENLEKEID 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 697 DLNKEIALQKESLMSLQAQLDKALQKEKHYlqttitKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQE 776
Cdd:TIGR04523 565 EKNKEIEELKQTQKSLKKKQEEKQELIDQK------EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
|
490
....*....|....*...
gi 767990634 777 KKAQLEEEIIAYEERMKK 794
Cdd:TIGR04523 639 KKNKLKQEVKQIKETIKE 656
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
455-672 |
4.04e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 455 EAECKALQAEVQKLKNS---LEEAKQQ-ERLAGEAPAAQQAAQCKEEAA-----LAGCHLEDTQRKLQkglLLDKQkadt 525
Cdd:COG4913 224 FEAADALVEHFDDLERAheaLEDAREQiELLEPIRELAERYAAARERLAeleylRAALRLWFAQRRLE---LLEAE---- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 526 IQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEA-LRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKhqhreqg 604
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLA------- 369
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767990634 605 sikcKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRA 672
Cdd:COG4913 370 ----ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
526-645 |
4.21e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 526 IQELQRELQMLQKESSMAEKEQtsnrkrvEELSLELSEALRKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGS 605
Cdd:COG0542 413 LDELERRLEQLEIEKEALKKEQ-------DEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYG 485
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 767990634 606 IKCKLEEDLQEATKLLEDKREQLKKS-KEHE--------------KLMEGELEAL 645
Cdd:COG0542 486 KIPELEKELAELEEELAELAPLLREEvTEEDiaevvsrwtgipvgKLLEGEREKL 540
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
551-710 |
6.03e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 551 RKRVEELSLELSEALRK--LENSDKEKRQLQKtvaEQDMKMNDMLDRIKHQH----REQGSIKCKLEEDLQEATKLLEDK 624
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKriLEEAKKEAEAIKK---EALLEAKEEIHKLRNEFekelRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 625 REQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLraelqccstqleSSLNKYNTSQQVIQDLNKEIAL 704
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI------------SGLTAEEAKEILLEKVEEEARH 169
|
....*.
gi 767990634 705 QKESLM 710
Cdd:PRK12704 170 EAAVLI 175
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
455-648 |
9.36e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 455 EAECKALQAEVQKLKNSLEEAKQQERLAGEapaaqqaaqckeeaalagcHLEDTQRKLQKgllldkQKADTIQELQRELQ 534
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALRE-------------------ELDELEAQIRG------NGGDRLEQLEREIE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 535 MLQKEssmaekeqtsnRKRVEELSLELSEALRKLE----NSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKL 610
Cdd:COG4913 349 RLERE-----------LEERERRRARLEALLAALGlplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417
|
170 180 190
....*....|....*....|....*....|....*...
gi 767990634 611 EEDLQEatklLEDKREQLKKSKeheKLMEGELEALRQE 648
Cdd:COG4913 418 RRELRE----LEAEIASLERRK---SNIPARLLALRDA 448
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
611-810 |
9.87e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 9.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 611 EEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENS---RKLEEENENLRAELQccstQLESSLNK 687
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISselPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767990634 688 YNTSQQVIQDLNKEIALQKESLMSLQAQLdKALQKEKHYLQTTI--------TKEAYDALSRKSAACQDDLTQALEKLNH 759
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERI-EELKKEIEELEEKVkelkelkeKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767990634 760 VTSETKSLQQSLTQTQEKKAQLEEeiiaYEERMKKLNTELRKLRGFHQESE 810
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHELYE 365
|
|
| |
