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Conserved domains on  [gi|767009028|gb|AJT40293|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Circus hudsonius]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 599.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   3 QLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  83 MLALLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 163 LSGNYTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 243 TLTTILFLNPSPLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 767009028 323 PCL 325
Cdd:MTH00111 321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 599.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   3 QLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  83 MLALLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 163 LSGNYTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 243 TLTTILFLNPSPLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 767009028 323 PCL 325
Cdd:MTH00111 321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
14-310 4.68e-111

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 324.43  E-value: 4.68e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   14 LSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   94 --IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNM 171
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  172 LTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 767009028  252 PSPLNLSPQLFTMFLAtKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLW 310
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 18-305 2.70e-103

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 305.90  E-value: 2.70e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:COG1005   20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  98 L--PFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGnyTLNMLTIT 175
Cdd:COG1005  100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG--SLNLSEIV 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 176 ---QEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL-- 250
Cdd:COG1005  178 eaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLgg 257

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 251 -----NPSPLNLSPQLFTMFLatKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:COG1005  258 wlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 599.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   3 QLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  83 MLALLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 163 LSGNYTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 243 TLTTILFLNPSPLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 767009028 323 PCL 325
Cdd:MTH00111 321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 7-323 2.44e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 501.06  E-value: 2.44e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLAL 86
Cdd:MTH00134   6 ITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLAL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  87 LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGN 166
Cdd:MTH00134  86 TLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 167 YTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00134 166 FTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767009028 247 ILFLNPSPLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00134 246 ILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 14-323 3.91e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 500.31  E-value: 3.91e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  14 LSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIW 93
Cdd:MTH00104   7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  94 IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNMLT 173
Cdd:MTH00104  87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 174 ITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPS 253
Cdd:MTH00104 167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 254 PLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00104 247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 7-323 3.48e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 497.99  E-value: 3.48e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLAL 86
Cdd:MTH00071   5 ISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMAL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  87 LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGN 166
Cdd:MTH00071  85 TLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 167 YTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00071 165 FSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLST 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767009028 247 ILFLNPSPLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00071 245 ILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-323 5.29e-146

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 413.54  E-value: 5.29e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   6 TLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLA 85
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  86 LLLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSG 165
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 166 NYTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767009028 246 TILFLNPSPLnlspqlfTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00218 241 VILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 7-323 2.06e-141

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 402.43  E-value: 2.06e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLAL 86
Cdd:MTH00040   4 ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  87 LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGN 166
Cdd:MTH00040  84 FLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 167 YTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00040 164 FSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSV 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767009028 247 ILFLN-PSPLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00040 244 ILFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 13-320 7.61e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 337.10  E-value: 7.61e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  13 TLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTI 92
Cdd:MTH00195   8 FLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALIL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  93 WIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNML 172
Cdd:MTH00195  88 WVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIM 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 173 TITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNP 252
Cdd:MTH00195 168 VISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGG 247

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767009028 253 SPlnlspqlfTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAG 320
Cdd:MTH00195 248 GG--------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 20-307 2.48e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 330.68  E-value: 2.48e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  20 ILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLPLP 99
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 100 FSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNMLTITQEPL 179
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 180 YLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLnpSPLNLSP 259
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFF--GGSSVLF 251

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 767009028 260 QLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSL 307
Cdd:MTH00143 252 LLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 18-316 4.84e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 327.11  E-value: 4.84e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:MTH00193  13 ICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  98 LPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNMLTITQE 177
Cdd:MTH00193  93 YLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 178 PLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPSPLNl 257
Cdd:MTH00193 173 YIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLS- 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 767009028 258 spqlftMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPI 316
Cdd:MTH00193 252 ------LLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NADHdh pfam00146
NADH dehydrogenase;
14-310 4.68e-111

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 324.43  E-value: 4.68e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   14 LSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   94 --IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNM 171
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  172 LTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 767009028  252 PSPLNLSPQLFTMFLAtKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLW 310
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 18-313 7.32e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 308.89  E-value: 7.32e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:MTH00225  12 ICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  98 LPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNMLTITQE 177
Cdd:MTH00225  92 SMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 178 PLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLnPSPLNL 257
Cdd:MTH00225 172 YFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFF-GGFFVT 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 767009028 258 SPqlftMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHIS 313
Cdd:MTH00225 251 ID----LFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 13-323 8.28e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 307.04  E-value: 8.28e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  13 TLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTI 92
Cdd:MTH00054   8 ILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  93 W--IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLN 170
Cdd:MTH00054  88 WgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLT 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 171 MLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL 250
Cdd:MTH00054 168 EIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFL 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767009028 251 NPSPLNLSPQLF---TMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00054 248 GGWLVISGPTSYfsnFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 18-305 2.70e-103

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 305.90  E-value: 2.70e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:COG1005   20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  98 L--PFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGnyTLNMLTIT 175
Cdd:COG1005  100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG--SLNLSEIV 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 176 ---QEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL-- 250
Cdd:COG1005  178 eaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLgg 257

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 251 -----NPSPLNLSPQLFTMFLatKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:COG1005  258 wlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 6-323 2.07e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 303.58  E-value: 2.07e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   6 TLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLA 85
Cdd:MTH00216   5 IIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  86 LLLALTIWIPLPLP--FSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLL 163
Cdd:MTH00216  85 FTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLC 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 164 SGNYTLNMLTITQEP-LYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00216 165 VGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMS 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 243 TLTTILFLNpSPLNLSPQLF--TMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLWHISMPISYAG 320
Cdd:MTH00216 245 CLTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNG 323


                 ...
gi 767009028 321 VPP 323
Cdd:MTH00216 324 PPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
18-305 2.09e-98

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 293.25  E-value: 2.09e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  18 IPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLP 97
Cdd:PRK06076  21 VVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIP 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  98 L--PFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGnyTLNMLTI- 174
Cdd:PRK06076 101 FgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG--SLNLSDIv 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 175 -TQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN-- 251
Cdd:PRK06076 179 eAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgw 258

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 767009028 252 --PSPLNLSPQLFTMFLAtKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:PRK06076 259 lpPFPLGGGIPGAIWFVL-KVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-323 3.98e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 265.34  E-value: 3.98e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   1 MTQLHTLTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTM 80
Cdd:MTH00029   1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  81 TPMLALLLALTIW--IPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:MTH00029  81 APIISFTLAILAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 159 SVVLLSGNYTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:MTH00029 161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 239 MLMNTLTTILFLNP--SPLNLSPQLFTMFLATKILLLSSG--------------FLWVRASYPRFRYDQLMHLLWKSFLP 302
Cdd:MTH00029 241 ILMSCMMTIFFLGGwlSPLDGIPTPPEAFSIFEQIASSKSsfwfftkssifilfFIWSRASFPRIRYDQLMKLLWKTYLP 320

                        330       340
                 ....*....|....*....|.
gi 767009028 303 LTLSLCLWHISMPISYAGVPP 323
Cdd:MTH00029 321 LSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 9-316 1.81e-82

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 252.01  E-value: 1.81e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   9 YLAMTLSYaIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLL 88
Cdd:MTH00010   6 FISILLSY-VMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  89 ALTIWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYT 168
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 169 LNMLTITQeplylifSSWPLMMM------WYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00010 165 FSKIIMSQ-------YSWILLMIipltvsWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMS 237

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767009028 243 TLTTILFLNPSPlnlSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLwhISMPI 316
Cdd:MTH00010 238 LFTSVFFTSFIP---SIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPI 306
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-305 4.04e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 198.97  E-value: 4.04e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  12 MTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALT 91
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  92 IWIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNM 171
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 172 ltitqeplYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:MTH00090 161 --------SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 767009028 252 psplnlspqlFTMFLatkILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:MTH00090 233 ----------FSFLM---LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 10-305 1.43e-51

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 173.98  E-value: 1.43e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  10 LAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLA---L 86
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  87 LLALTIwIPLPLPFSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGn 166
Cdd:CHL00032 110 LLSYLV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN- 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 167 yTLNMLTITQEPLYLIFSSWPL------MMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIML 240
Cdd:CHL00032 188 -SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLV 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 241 MNTLTTILFL---NPS----------PLNLSPQLFTMFLATKILLLSSG-FLWV----RASYPRFRYDQLMHLLWKSFLP 302
Cdd:CHL00032 267 SSLFVTVLYLggwNLSipyifipelfEINKTGGVFGTTIGIFITLAKTYlFLFIsittRWTLPRLRMDQLLNLGWKFLLP 346


                 ...
gi 767009028 303 LTL 305
Cdd:CHL00032 347 ISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 20-305 4.71e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 162.79  E-value: 4.71e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  20 ILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTMTPMLALLLALTIWIPLPLP 99
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 100 FSLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVVLLSGNYTLNMLTITQEPL 179
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 180 YLIFssWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPSplnlsp 259
Cdd:MTH00058 174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG------ 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 767009028 260 qlFTMFLATKILLLssgFLWVRASYPRFRYDQLMHLLWKSFLPLTL 305
Cdd:MTH00058 246 --FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-310 1.49e-30

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 117.21  E-value: 1.49e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028   7 LTYLAMTLSYAIPILIAVAFLTLVERKILSYMQARKGPnivgpfGLLQPVADGVKLFIKEPIRPSTSSPLlFTMTPMLAL 86
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028  87 -----LLALTIWIPLPLPFSLADLNLGLLFLLAMSSLAvysILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVV 161
Cdd:COG0650   74 aamllAALLVPVLTTGPPLSFSGDLIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767009028 162 LLSGN---YTLNMLTITQEPLYLIFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:COG0650  151 LLAGStslSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767009028 239 MLMNTLTTILFLnPSPLNLSPQLFTMFLATKILLLSSGFLWVRASYPRFRYDQLMHLLWKSFLPLTLSLCLW 310
Cdd:COG0650  231 FVLLSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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