NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|765536743|ref|WP_044743721|]
View 

DUF4367 domain-containing protein [Geobacillus stearothermophilus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4367 super family cl16773
Domain of unknown function (DUF4367); This family of proteins is found in bacteria, archaea ...
 65-184 2.60e-04

Domain of unknown function (DUF4367); This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 229 and 435 amino acids in length.


The actual alignment was detected with superfamily member pfam14285:

Pssm-ID: 433839  Cd Length: 110  Bit Score: 38.88  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765536743   65 KPTVLPEDVKElepKTVVVTQGAKKLTVVkqaWVDKDADKK----LKYQRKELLIIQSDDDGTVKpmnvlskgEKIQVAG 140
Cdd:pfam14285   3 EPTYLPEGYKF---KLTNISEDSEVATLE---YKNDYGGLIsfsiIKQSEQEGQGTSIDTEDAEV--------EKIEING 68

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 765536743  141 VDAwLIKRGEHDPIQLIFWKDGRYFNVRGmNIKADKLIKIAESL 184
Cdd:pfam14285  69 IEA-TYYEKEDGEYTLVWEDEGYMYTLTG-NISKEELIKIAESI 110
 
Name Accession Description Interval E-value
DUF4367 pfam14285
Domain of unknown function (DUF4367); This family of proteins is found in bacteria, archaea ...
 65-184 2.60e-04

Domain of unknown function (DUF4367); This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 229 and 435 amino acids in length.


Pssm-ID: 433839  Cd Length: 110  Bit Score: 38.88  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765536743   65 KPTVLPEDVKElepKTVVVTQGAKKLTVVkqaWVDKDADKK----LKYQRKELLIIQSDDDGTVKpmnvlskgEKIQVAG 140
Cdd:pfam14285   3 EPTYLPEGYKF---KLTNISEDSEVATLE---YKNDYGGLIsfsiIKQSEQEGQGTSIDTEDAEV--------EKIEING 68

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 765536743  141 VDAwLIKRGEHDPIQLIFWKDGRYFNVRGmNIKADKLIKIAESL 184
Cdd:pfam14285  69 IEA-TYYEKEDGEYTLVWEDEGYMYTLTG-NISKEELIKIAESI 110
 
Name Accession Description Interval E-value
DUF4367 pfam14285
Domain of unknown function (DUF4367); This family of proteins is found in bacteria, archaea ...
 65-184 2.60e-04

Domain of unknown function (DUF4367); This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 229 and 435 amino acids in length.


Pssm-ID: 433839  Cd Length: 110  Bit Score: 38.88  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765536743   65 KPTVLPEDVKElepKTVVVTQGAKKLTVVkqaWVDKDADKK----LKYQRKELLIIQSDDDGTVKpmnvlskgEKIQVAG 140
Cdd:pfam14285   3 EPTYLPEGYKF---KLTNISEDSEVATLE---YKNDYGGLIsfsiIKQSEQEGQGTSIDTEDAEV--------EKIEING 68

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 765536743  141 VDAwLIKRGEHDPIQLIFWKDGRYFNVRGmNIKADKLIKIAESL 184
Cdd:pfam14285  69 IEA-TYYEKEDGEYTLVWEDEGYMYTLTG-NISKEELIKIAESI 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH