|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
135-438 |
6.53e-154 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 444.60 E-value: 6.53e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 135 GAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFG 214
Cdd:COG3829 132 SAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFG 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 215 YERGAFTGANQR-KIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALRE 293
Cdd:COG3829 212 YEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 294 GRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVM 373
Cdd:COG3829 292 GRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVL 371
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757910757 374 SEGRMITSADL------ELNDYAALAPVSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLM 438
Cdd:COG3829 372 SEGDVITPEHLpeylleEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKL 442
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
135-444 |
1.22e-127 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 377.55 E-value: 1.22e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 135 GAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFG 214
Cdd:TIGR02915 133 LGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFG 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 215 YERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREG 294
Cdd:TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 295 RFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMS 374
Cdd:TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757910757 375 EGRMITSADLELNDYA---ALAPVSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAHGMR 444
Cdd:TIGR02915 373 EGNQITAEDLGLDAREraeTPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGIK 445
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
128-438 |
1.47e-106 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 325.59 E-value: 1.47e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 128 DPVAPPVGAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTL 207
Cdd:PRK05022 174 DVAEFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 208 LQAELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDM 287
Cdd:PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 288 EAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAH-RRLRgFSPDAVASLYGYSWPGNVREL--- 363
Cdd:PRK05022 334 REEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGlRSLR-LSPAAQAALLAYDWPGNVRELehv 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 364 INR-VRRAIVMSEGRMIT--SADLELNDYAALAP------------VSLLEAREAAERQAIEQALLRHRGRFADAARELG 428
Cdd:PRK05022 413 ISRaALLARARGAGRIVTleAQHLDLPAEVALPPpeaaaapaavvsQNLREATEAFQRQLIRQALAQHQGNWAAAARALE 492
|
330
....*....|
gi 757910757 429 VSRVTLYRLM 438
Cdd:PRK05022 493 LDRANLHRLA 502
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
143-310 |
7.81e-102 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 301.24 E-value: 7.81e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 143 MVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTG 222
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 223 ANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFH 302
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 757910757 303 RLCVLKIE 310
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
158-435 |
5.71e-100 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 310.67 E-value: 5.71e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 158 RRVAATDAPVFISGESGTGKELTAVAIHERSSRaQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQR-KIGRVEAANG 236
Cdd:NF041552 284 KQVAKTNSSVLITGESGTGKEVFARAIHQASGR-KGPFVPVNCSAIPEELFESEFFGYEEGAFTGALKKgKIGKFELANN 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 237 GTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRA 316
Cdd:NF041552 363 GTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 317 RGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADL---------ELN 387
Cdd:NF041552 443 RKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKDSIpeyilesvkKKE 522
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 757910757 388 DYAALAPVSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLY 435
Cdd:NF041552 523 DEEGDYPLDLNKAVEKLEIDTIKKALEMSNGNKAKAAKLLNIPRSTLY 570
|
|
| VpsR |
pfam20161 |
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its ... |
1-118 |
5.82e-23 |
|
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its alignment to response regulators AlgB and NrtC all the way to the N-terminus. Instead of being a response regulator with a histidine kinase partner, the sigma-54-dependent transcription factor VpsR directly binds to cyclic-di-GMP. Its regulon includes genes for the biosynthesis of the biofilm matrix component called Vibrio polysaccharide (VPS).
Pssm-ID: 437993 Cd Length: 121 Bit Score: 93.48 E-value: 5.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 1 MGADQRHVIYYSrEPNDALRGHFDECGWRVDLAETVRDVRRVVQHGVATAGLLDFS-PGFKPSDLRELESCLsiQHIGWI 79
Cdd:pfam20161 6 ADSVPRTLLVVG-GPDESWLALLEQAGWQCHRCYDLREAERLLLEIGPCVGLVDLShDDFSLQGLAALVNRH--KQVRWI 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 757910757 80 AATRRGQLQDATLRHLIRDYCFDYVTMPYETARIVETVG 118
Cdd:pfam20161 83 ALIRPEQLDDDAICQFIVDFCIDYFTSPIPDARLLFTIG 121
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
162-304 |
2.06e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.98 E-value: 2.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 162 ATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYErgaftgANQRKIGRVEAANGGTLFL 241
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757910757 242 DEIGDLPLESQASLLRFLQEGKIERLgahvsVPVDVRVICATHVDMeaalrEGRFREDLFHRL 304
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDRL 143
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
166-305 |
1.07e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 65.47 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 166 PVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGR-----VEAANGGTLF 240
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlalalARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757910757 241 LDEIGDLPLESQASLLRFLQEgkiERLGAHVSVPVDVRVICATHVD---MEAALREgRFREDLFHRLC 305
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDEkdlGPALLRR-RFDRRIVLLLI 147
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
135-438 |
6.53e-154 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 444.60 E-value: 6.53e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 135 GAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFG 214
Cdd:COG3829 132 SAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFG 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 215 YERGAFTGANQR-KIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALRE 293
Cdd:COG3829 212 YEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 294 GRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVM 373
Cdd:COG3829 292 GRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVL 371
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757910757 374 SEGRMITSADL------ELNDYAALAPVSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLM 438
Cdd:COG3829 372 SEGDVITPEHLpeylleEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKL 442
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
17-442 |
1.11e-144 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 420.14 E-value: 1.11e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 17 DALRGHFDECGWRVDLAETVRDVRRVVQHGVATAGLLDFS-PGFKPSDLreLESCLSIQ-HIGWIAATRRGQLQDAtlRH 94
Cdd:COG2204 16 RLLKELLERAGYEVETAASGEEALALLREEPPDLVLLDLRmPGMDGLEL--LRELRALDpDLPVILLTGYGDVETA--VE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 95 LIRDYCFDYVTMPYETARIVETVGHAHGMVALtdpvappVGAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESG 174
Cdd:COG2204 92 AIKAGAFDYLTKPFDLEELLAAVERALERRRL-------RRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 175 TGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQAS 254
Cdd:COG2204 165 TGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAK 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 255 LLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKG 334
Cdd:COG2204 245 LLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAA 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 335 DAHRRLRgFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADLElndyaalapvsllEAREAAERQAIEQALL 414
Cdd:COG2204 325 ELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAEDLP-------------EALEEVERELIERALE 390
|
410 420
....*....|....*....|....*...
gi 757910757 415 RHRGRFADAARELGVSRVTLYRLMCAHG 442
Cdd:COG2204 391 ETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
135-444 |
1.22e-127 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 377.55 E-value: 1.22e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 135 GAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFG 214
Cdd:TIGR02915 133 LGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFG 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 215 YERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREG 294
Cdd:TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 295 RFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMS 374
Cdd:TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757910757 375 EGRMITSADLELNDYA---ALAPVSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAHGMR 444
Cdd:TIGR02915 373 EGNQITAEDLGLDAREraeTPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGIK 445
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
107-442 |
3.89e-119 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 361.91 E-value: 3.89e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 107 PYETARIVETVGHAHGMVALTDPVAPPVGAGRSEG-------EMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKEL 179
Cdd:COG3284 280 PASPRPLRLRDGRRLGALLRLRPARRAARAAPAGApapaalaALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 180 TAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQR-KIGRVEAANGGTLFLDEIGDLPLESQASLLRF 258
Cdd:COG3284 360 FARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRV 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 259 LQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGkDIEVLARHMLERFkgDAHR 338
Cdd:COG3284 440 LQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRERE-DLPALIEHLLREL--AAGR 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 339 RLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADL-----ELNDYAALAPVSLLEAREAAERQAIEQAL 413
Cdd:COG3284 517 GPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVEDLpdelrAELAAAAPAAAAPLTSLEEAERDAILRAL 596
|
330 340
....*....|....*....|....*....
gi 757910757 414 LRHRGRFADAARELGVSRVTLYRLMCAHG 442
Cdd:COG3284 597 RACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
128-438 |
1.47e-106 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 325.59 E-value: 1.47e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 128 DPVAPPVGAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTL 207
Cdd:PRK05022 174 DVAEFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 208 LQAELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDM 287
Cdd:PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 288 EAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAH-RRLRgFSPDAVASLYGYSWPGNVREL--- 363
Cdd:PRK05022 334 REEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGlRSLR-LSPAAQAALLAYDWPGNVRELehv 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 364 INR-VRRAIVMSEGRMIT--SADLELNDYAALAP------------VSLLEAREAAERQAIEQALLRHRGRFADAARELG 428
Cdd:PRK05022 413 ISRaALLARARGAGRIVTleAQHLDLPAEVALPPpeaaaapaavvsQNLREATEAFQRQLIRQALAQHQGNWAAAARALE 492
|
330
....*....|
gi 757910757 429 VSRVTLYRLM 438
Cdd:PRK05022 493 LDRANLHRLA 502
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
101-436 |
1.69e-105 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 321.30 E-value: 1.69e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 101 FDYVTMPYETARIVETVGHAHGmvALTDPVAPPVGAGRSEG--EMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKE 178
Cdd:TIGR01818 94 FEYLPKPFDLDEAVTLVERALA--HAQEQVALPADAGEAEDsaELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 179 LTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRF 258
Cdd:TIGR01818 172 LVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRV 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 259 LQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHR 338
Cdd:TIGR01818 252 LADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDV 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 339 RLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADLE----LNDYAALAPVS------------------ 396
Cdd:TIGR01818 332 EPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDLPaelaLTGRPASAPDSdgqdswdealeawakqal 411
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 757910757 397 -------LLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYR 436
Cdd:TIGR01818 412 srgeqglLDRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTR 458
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
96-437 |
2.53e-102 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 313.32 E-value: 2.53e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 96 IRDYCFDYVTMPYETARIVETVGHAHGMVALTDPVAP---PVGAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGE 172
Cdd:PRK11361 95 LRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHlhqALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGE 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 173 SGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQ 252
Cdd:PRK11361 175 SGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQ 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 253 ASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERF 332
Cdd:PRK11361 255 AKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKF 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 333 KGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADLELNDYAALAPVSLLEA--------REAA 404
Cdd:PRK11361 335 SSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTapvgernlKEEI 414
|
330 340 350
....*....|....*....|....*....|....*..
gi 757910757 405 ---ERQAIEQALLRHRGRFADAARELGVSRVTL-YRL 437
Cdd:PRK11361 415 krvEKRIIMEVLEQQEGNRTRTALMLGISRRALmYKL 451
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
143-310 |
7.81e-102 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 301.24 E-value: 7.81e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 143 MVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTG 222
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 223 ANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFH 302
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 757910757 303 RLCVLKIE 310
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
158-435 |
5.71e-100 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 310.67 E-value: 5.71e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 158 RRVAATDAPVFISGESGTGKELTAVAIHERSSRaQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQR-KIGRVEAANG 236
Cdd:NF041552 284 KQVAKTNSSVLITGESGTGKEVFARAIHQASGR-KGPFVPVNCSAIPEELFESEFFGYEEGAFTGALKKgKIGKFELANN 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 237 GTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRA 316
Cdd:NF041552 363 GTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 317 RGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADL---------ELN 387
Cdd:NF041552 443 RKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKDSIpeyilesvkKKE 522
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 757910757 388 DYAALAPVSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLY 435
Cdd:NF041552 523 DEEGDYPLDLNKAVEKLEIDTIKKALEMSNGNKAKAAKLLNIPRSTLY 570
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
101-434 |
3.58e-93 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 289.24 E-value: 3.58e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 101 FDYVTMPYETARIVETVGHAHGMVALTDPVAPPVGAGRSEgeMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELT 180
Cdd:PRK10365 101 LDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQFG--MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 181 AVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQ 260
Cdd:PRK10365 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQ 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 261 EGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRL 340
Cdd:PRK10365 259 EREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAV 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 341 RGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADLELNdyAALAPVSLLEARE-----AAERQAIEQALLR 415
Cdd:PRK10365 339 KGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLA--IASTPIPLGQSQDiqplvEVEKEVILAALEK 416
|
330
....*....|....*....
gi 757910757 416 HRGRFADAARELGVSRVTL 434
Cdd:PRK10365 417 TGGNKTEAARQLGITRKTL 435
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
108-445 |
8.72e-91 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 285.85 E-value: 8.72e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 108 YETARIVETVGHAHGMVALT--DPVAPPVGAG----RSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTA 181
Cdd:PRK15424 180 YSAATVRQAFEDALDMTRMTlrHNTHYATRNAlrtrYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 182 VAIH--------ERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGAnqRKIGR---VEAANGGTLFLDEIGDLPLE 250
Cdd:PRK15424 260 QAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS--RRGGRaglFEIAHGGTLFLDEIGEMPLP 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 251 SQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLE 330
Cdd:PRK15424 338 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 331 R--------FKGDAHRRLRGFSPdavaSLYGYSWPGNVRELINRVRR-AIVMSEGRMITSADLELNDYAALAPVSLLEAR 401
Cdd:PRK15424 418 QslaalsapFSAALRQGLQQCET----LLLHYDWPGNVRELRNLMERlALFLSVEPTPDLTPQFLQLLLPELARESAKTP 493
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 757910757 402 EA-AERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAHGMRD 445
Cdd:PRK15424 494 APrLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKAEAKAQ 538
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
143-430 |
1.16e-89 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 282.08 E-value: 1.16e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 143 MVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTG 222
Cdd:COG3283 206 IVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFGN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 223 ANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFH 302
Cdd:COG3283 286 AREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYY 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 303 RLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSA 382
Cdd:COG3283 366 RLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPE 445
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 757910757 383 DLELNDYAALAPVS--LLEAR--EAAERqaIEQALLRhrgRFADA-------ARELGVS 430
Cdd:COG3283 446 DLQLPEYAASAGLLddLLEGSldEIVKR--FERSLLR---RLYPSypstrklAKRLGVS 499
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
101-443 |
1.17e-89 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 280.99 E-value: 1.17e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 101 FDYVTMPYEtarIVETVGHAHGMVA----LTDPVAPPVGAGRSEgeMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTG 176
Cdd:PRK10923 99 FDYLPKPFD---IDEAVALVERAIShyqeQQQPRNIQVNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 177 KELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLL 256
Cdd:PRK10923 174 KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 257 RFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDA 336
Cdd:PRK10923 254 RVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAAREL 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 337 HRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADLELNDYAALAPVS-------------------- 396
Cdd:PRK10923 334 GVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPEStsqmqpdswatllaqwadra 413
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 757910757 397 --------LLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAHGM 443
Cdd:PRK10923 414 lrsghqnlLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
131-443 |
2.70e-85 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 268.63 E-value: 2.70e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 131 APPVGAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQA 210
Cdd:PRK15115 124 SAPATDERWREAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLES 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 211 ELFGYERGAFTGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAA 290
Cdd:PRK15115 204 ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKA 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 291 LREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLeRFKGDAHRRL-RGFSPDAVASLYGYSWPGNVRELINRVRR 369
Cdd:PRK15115 284 MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFvRAFSTDAMKRLMTASWPGNVRQLVNVIEQ 362
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757910757 370 AIVMSEGRMITSADLE--LNDYAALAPvSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAHGM 443
Cdd:PRK15115 363 CVALTSSPVISDALVEqaLEGENTALP-TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
99-440 |
2.24e-84 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 269.04 E-value: 2.24e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 99 YCFDYVTMPYETARIVETVGHAHGMVALTDPVAPPVGAGRSEGEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKE 178
Cdd:TIGR02329 170 YSADSVRQAFDDALDVARATRLRQAATLRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 179 LTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQR-KIGRVEAANGGTLFLDEIGDLPLESQASLLR 257
Cdd:TIGR02329 250 LVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGgRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 258 FLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRARGKDIEVLARHMLERfkGDAH 337
Cdd:TIGR02329 330 VLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ--AAAA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 338 RRLRgFSPDAVASLYG-------YSWPGNVRELINRVRRAIV----MSEGrMITSADL-----ELNDYAALAPVSLLEAR 401
Cdd:TIGR02329 408 LRLP-DSEAAAQVLAGvadplqrYPWPGNVRELRNLVERLALelsaMPAG-ALTPDVLralapELAEASGKGKTSALSLR 485
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 757910757 402 EAA--ERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCA 440
Cdd:TIGR02329 486 ERSrvEALAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
144-430 |
7.65e-80 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 251.06 E-value: 7.65e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 144 VGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGA 223
Cdd:TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 224 NQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHR 303
Cdd:TIGR02974 82 QKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 304 LCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRL-RGFSPDAVASLYGYSWPGNVRELINRVRRAIVMS--EGRMI- 379
Cdd:TIGR02974 162 LAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLfPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHglEEAPId 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 757910757 380 -------------------------TSADLELNDYAALA-PVSLLEAREAAERQAIEQALLRHRGRFADAARELGVS 430
Cdd:TIGR02974 242 eiiidpfaspwrpkqaapavdevnsTPTDLPSPSSIAAAfPLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLT 318
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
148-444 |
2.89e-73 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 234.36 E-value: 2.89e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 148 DAMLGLFRTIRRVAAtdapVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLqaelfgyergaftganqrk 227
Cdd:COG3604 103 EEDLRLLETLASLAA----VAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLL------------------- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 228 igrveaanggtlfldeigdlplESqasllrfLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVL 307
Cdd:COG3604 160 ----------------------ES-------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVF 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 308 KIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADLELN 387
Cdd:COG3604 211 PIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPG 290
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 757910757 388 DYAALapvsllearEAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAHGMR 444
Cdd:COG3604 291 SREAL---------EEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
143-444 |
5.79e-72 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 230.33 E-value: 5.79e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 143 MVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTG 222
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 223 ANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFH 302
Cdd:PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 303 RLCVLKIEEPPLRARGKDIEVLARHmlerFKGDAHRRLR-----GFSPDAVASLYGYSWPGNVRELINRVRRAIVM---S 374
Cdd:PRK11608 168 RLAFDVVQLPPLRERQSDIMLMAEH----FAIQMCRELGlplfpGFTERARETLLNYRWPGNIRELKNVVERSVYRhgtS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 375 EG-----------RMITSADLELNDYAALA--PVSLLEAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAH 441
Cdd:PRK11608 244 EYpldniiidpfkRRPAEEAIAVSETTSLPtlPLDLREWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKH 323
|
...
gi 757910757 442 GMR 444
Cdd:PRK11608 324 QIL 326
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
141-438 |
2.15e-70 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 236.27 E-value: 2.15e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 141 GEMVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAF 220
Cdd:PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAF 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 221 TGANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDL 300
Cdd:PRK15429 456 TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 301 FHRLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRGFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMIt 380
Cdd:PRK15429 536 YYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL- 614
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 757910757 381 saDLELNDYAALAPVSLLEAREAA-----ERQAIEQALLRHRGRFA---DAARELGVSRVTLYRLM 438
Cdd:PRK15429 615 --QLSLPDITLPEPETPPAATVVAqegedEYQLIVRVLKETNGVVAgpkGAAQRLGLKRTTLLSRM 678
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
158-430 |
3.49e-70 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 231.50 E-value: 3.49e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 158 RRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGRVEAANGG 237
Cdd:PRK10820 221 RKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGG 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 238 TLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCVLKIEEPPLRAR 317
Cdd:PRK10820 301 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDR 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 318 GKDIEVLARHMLERF---KGDAHRRLrgfSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSADLELNDYAALAP 394
Cdd:PRK10820 381 PQDIMPLTELFVARFadeQGVPRPKL---AADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAAVA 457
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 757910757 395 V-------SLLEAREAAERQAIEQaLLRHRGRFADAARELGVS 430
Cdd:PRK10820 458 VgedamegSLDEITSRFERSVLTR-LYRNYPSTRKLAKRLGVS 499
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
143-443 |
1.37e-68 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 230.34 E-value: 1.37e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 143 MVGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGyerGAFTG 222
Cdd:PRK11388 327 MPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 223 ANQRKIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFH 302
Cdd:PRK11388 404 SENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 303 RLCVLKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLRgFSPDAVASLYGYSWPGNVRELINRVRRAIVMSEGRMITSA 382
Cdd:PRK11388 484 ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLS 562
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757910757 383 DL--------ELNDYAALAPVSLLeAREAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLMCAHGM 443
Cdd:PRK11388 563 DLpehlfteqATDDVSATRLSTSL-SLAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGI 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
157-431 |
6.03e-38 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 144.98 E-value: 6.03e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 157 IRRVA-ATDAPVFISGESGTGKELTAVAIHE-RSSRAQ--APFIAINC------GAIpSTLlqaelFGYERGAFTGANQR 226
Cdd:COG4650 200 IERVAiRSRAPILLTGPTGAGKSQLARRIYElKKARHQvsGRFVEVNCatlrgdGAM-SAL-----FGHVKGAFTGAVSD 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 227 KIGRVEAANGGTLFLDEIGDLPLESQASLLRFLQEGKIERLGAHVSVPVDVRVICATHVDMEAALREGRFREDLFHRLCV 306
Cdd:COG4650 274 RAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 307 LKIEEPPLRARGKDIEVLARHMLERFKGDAHRRLR----------GF--SPDAvaslygySWPGNVRELINRVRRAIVMS 374
Cdd:COG4650 354 WTFRLPGLAERREDIEPNLDYELARFAREQGRRVRfnkeararylAFatSPEA-------LWSGNFRDLNASVTRMATLA 426
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757910757 375 EGRMITSADLE-------------LNDYAALAPVSLLEAREAAERQAIEQALLRHRGR-------FADAAREL-GVSR 431
Cdd:COG4650 427 EGGRITVALVDeeiarlrrlwqraEAATGDDLLAELLGAEQAAELDLFDRVQLAAVIRvcrrsrsLSEAGRTLfAVSR 504
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
166-365 |
1.28e-29 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 122.52 E-value: 1.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 166 PVFISGESGTGKELTAVAIHE--RSSR---AQAPFIAINCG--AIPSTLLQAELFGYERGAFTGANQRKIGRVEAANGGT 238
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYEyaIEIGvlpEDAPFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 239 LFLDEIGDLPLESQASLLRFLQEGKIERLG-AHVSVPVDVRVICATHVDMEAALregrfredL--FHRLCVLKIEEPPLR 315
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPESSL--------LktFLRRIPMVIKLPSLE 283
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 316 ARGKDievlarhmlER-------FKGDAHR---RLRgFSPDAVASLYGYSWPGNVRELIN 365
Cdd:COG1221 284 ERSLE---------ERlelikhfFKEEAKRlnkPIK-VSKEVLKALLLYDCPGNIGQLKS 333
|
|
| VpsR |
pfam20161 |
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its ... |
1-118 |
5.82e-23 |
|
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its alignment to response regulators AlgB and NrtC all the way to the N-terminus. Instead of being a response regulator with a histidine kinase partner, the sigma-54-dependent transcription factor VpsR directly binds to cyclic-di-GMP. Its regulon includes genes for the biosynthesis of the biofilm matrix component called Vibrio polysaccharide (VPS).
Pssm-ID: 437993 Cd Length: 121 Bit Score: 93.48 E-value: 5.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 1 MGADQRHVIYYSrEPNDALRGHFDECGWRVDLAETVRDVRRVVQHGVATAGLLDFS-PGFKPSDLRELESCLsiQHIGWI 79
Cdd:pfam20161 6 ADSVPRTLLVVG-GPDESWLALLEQAGWQCHRCYDLREAERLLLEIGPCVGLVDLShDDFSLQGLAALVNRH--KQVRWI 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 757910757 80 AATRRGQLQDATLRHLIRDYCFDYVTMPYETARIVETVG 118
Cdd:pfam20161 83 ALIRPEQLDDDAICQFIVDFCIDYFTSPIPDARLLFTIG 121
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
162-304 |
2.06e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.98 E-value: 2.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 162 ATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYErgaftgANQRKIGRVEAANGGTLFL 241
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757910757 242 DEIGDLPLESQASLLRFLQEGKIERLgahvsVPVDVRVICATHVDMeaalrEGRFREDLFHRL 304
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDRL 143
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
144-314 |
5.76e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 85.86 E-value: 5.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 144 VGTCDAMLGLFRTIRRVAATDAPVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLqaelfgyergaftga 223
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELL--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 224 nqrkigrvEAANGGTLFLDEIGDLPLESQASLLRFLQEGKierlgahvsvPVDVRVICATHVDMEAALREGRFREDLFHR 303
Cdd:pfam14532 66 --------EQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 757910757 304 LCVLKIEEPPL 314
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
166-305 |
1.07e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 65.47 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 166 PVFISGESGTGKELTAVAIHERSSRAQAPFIAINCGAIPSTLLQAELFGYERGAFTGANQRKIGR-----VEAANGGTLF 240
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlalalARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757910757 241 LDEIGDLPLESQASLLRFLQEgkiERLGAHVSVPVDVRVICATHVD---MEAALREgRFREDLFHRLC 305
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDEkdlGPALLRR-RFDRRIVLLLI 147
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
401-438 |
2.83e-08 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 49.70 E-value: 2.83e-08
10 20 30
....*....|....*....|....*....|....*...
gi 757910757 401 REAAERQAIEQALLRHRGRFADAARELGVSRVTLYRLM 438
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKL 38
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
167-296 |
1.79e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 38.34 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757910757 167 VFISGESGTGKELTAVAIherSSRAQAPFIAINCGaipstllqaELFGYERGAFTGANQRKIGRVEAANGGTLFLDEI-- 244
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAV---AKELGAPFIEISGS---------ELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIda 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 757910757 245 ---------GDLPLESQASLLRFLQEGKierlgahvSVPVDVRVICATH-VDM-EAALReGRF 296
Cdd:pfam00004 69 lagsrgsggDSESRRVVNQLLTELDGFT--------SSNSKVIVIAATNrPDKlDPALL-GRF 122
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