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Conserved domains on  [gi|757819630|gb|AJO26623|]
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P20 protein, partial [Bamboo mosaic virus satellite RNA]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Potex_coat super family cl05609
Potexvirus coat protein; This family consists of several Potexvirus coat proteins.
1-113 1.84e-69

Potexvirus coat protein; This family consists of several Potexvirus coat proteins.


The actual alignment was detected with superfamily member pfam06184:

Pssm-ID: 399294  Cd Length: 153  Bit Score: 206.46  E-value: 1.84e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757819630    1 PGLANMGDRPFQVISARIVVSSASPMLYQARLYSPHDDDNVGSTGLQMSGTTPRTHRMRALPGQNTWFSGNTSSTQVIVA 80
Cdd:pfam06184  41 PGLAGMGDRAFQVIAAKIQGSSAAPLLYNARLYNPGDDDNVGATGLQLMGTTPRTHRLRALPGQNNWFFGNTEEAETILA 120
                          90       100       110
                  ....*....|....*....|....*....|...
gi 757819630   81 IDGLKTKTSDVTPQNAVAVQISYRVAPSELQSA 113
Cdd:pfam06184 121 IDGLKSKKGANAPQNAVAVQGCFRLAPSELQSA 153
 
Name Accession Description Interval E-value
Potex_coat pfam06184
Potexvirus coat protein; This family consists of several Potexvirus coat proteins.
1-113 1.84e-69

Potexvirus coat protein; This family consists of several Potexvirus coat proteins.


Pssm-ID: 399294  Cd Length: 153  Bit Score: 206.46  E-value: 1.84e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757819630    1 PGLANMGDRPFQVISARIVVSSASPMLYQARLYSPHDDDNVGSTGLQMSGTTPRTHRMRALPGQNTWFSGNTSSTQVIVA 80
Cdd:pfam06184  41 PGLAGMGDRAFQVIAAKIQGSSAAPLLYNARLYNPGDDDNVGATGLQLMGTTPRTHRLRALPGQNNWFFGNTEEAETILA 120
                          90       100       110
                  ....*....|....*....|....*....|...
gi 757819630   81 IDGLKTKTSDVTPQNAVAVQISYRVAPSELQSA 113
Cdd:pfam06184 121 IDGLKSKKGANAPQNAVAVQGCFRLAPSELQSA 153
 
Name Accession Description Interval E-value
Potex_coat pfam06184
Potexvirus coat protein; This family consists of several Potexvirus coat proteins.
1-113 1.84e-69

Potexvirus coat protein; This family consists of several Potexvirus coat proteins.


Pssm-ID: 399294  Cd Length: 153  Bit Score: 206.46  E-value: 1.84e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757819630    1 PGLANMGDRPFQVISARIVVSSASPMLYQARLYSPHDDDNVGSTGLQMSGTTPRTHRMRALPGQNTWFSGNTSSTQVIVA 80
Cdd:pfam06184  41 PGLAGMGDRAFQVIAAKIQGSSAAPLLYNARLYNPGDDDNVGATGLQLMGTTPRTHRLRALPGQNNWFFGNTEEAETILA 120
                          90       100       110
                  ....*....|....*....|....*....|...
gi 757819630   81 IDGLKTKTSDVTPQNAVAVQISYRVAPSELQSA 113
Cdd:pfam06184 121 IDGLKSKKGANAPQNAVAVQGCFRLAPSELQSA 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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