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Conserved domains on  [gi|757755524|ref|WP_042976548|]
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hypothetical protein [Bacillus subtilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 4-65 4.60e-25

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


:

Pssm-ID: 436748  Cd Length: 62  Bit Score: 96.45  E-value: 4.60e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757755524    4 VLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINQMEEDEYLLIYFSLMKFRHQLMLD 65
Cdd:pfam18801   1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
100-337 2.74e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 2.74e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 100 SLFFRGMYEFDKREYVKAIGFYREAekhlthVNDDIEKAEFHFKLAEAYYIMKQnhismhhVKQAMDIYNQYELYKVRKI 179
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKA------LELDPDDAEALYNLGLAYLRLGR-------YEEALADYEQALELDPDDA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 180 QCHFVISGNYVDFKHFEKSLPHLEKALELSKQLernerllSSAYYNLGKNYADLGINDKADHFLNEAAKVSesaklSNLP 259
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKALELDPDD-------AEALYNLGLALLELGRYDEAIEAYERALELD-----PDDA 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757755524 260 HSLFTYAKFLFKQGKTSEAIKMSKKGLSAAIsqgDKLFVSLQKYLEALYINAVDQAGIKKTIDYLERNKNYAYVEDIA 337
Cdd:COG0457  145 DALYNLGIALEKLGRYEEALELLEKLEAAAL---AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
 
Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 4-65 4.60e-25

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


Pssm-ID: 436748  Cd Length: 62  Bit Score: 96.45  E-value: 4.60e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757755524    4 VLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINQMEEDEYLLIYFSLMKFRHQLMLD 65
Cdd:pfam18801   1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
100-337 2.74e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 2.74e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 100 SLFFRGMYEFDKREYVKAIGFYREAekhlthVNDDIEKAEFHFKLAEAYYIMKQnhismhhVKQAMDIYNQYELYKVRKI 179
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKA------LELDPDDAEALYNLGLAYLRLGR-------YEEALADYEQALELDPDDA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 180 QCHFVISGNYVDFKHFEKSLPHLEKALELSKQLernerllSSAYYNLGKNYADLGINDKADHFLNEAAKVSesaklSNLP 259
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKALELDPDD-------AEALYNLGLALLELGRYDEAIEAYERALELD-----PDDA 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757755524 260 HSLFTYAKFLFKQGKTSEAIKMSKKGLSAAIsqgDKLFVSLQKYLEALYINAVDQAGIKKTIDYLERNKNYAYVEDIA 337
Cdd:COG0457  145 DALYNLGIALEKLGRYEEALELLEKLEAAAL---AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
lysogeny_AimR NF038310
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ...
 28-334 6.41e-03

AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny.


Pssm-ID: 468467  Cd Length: 363  Bit Score: 38.28  E-value: 6.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524  28 DAEILKAEVEQEINqmEEDEYLLIYFSLMKFRHQLMLDYLEPvttrirptiDELLEKIEASNKG-------ITGLLSYYS 100
Cdd:NF038310  84 EYELLKKLIEKEKN--SKNATNKEYAKVYELLYKRNKGEISG---------QELLDELEKKKKSkdpemkiLSDILLMYA 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 101 LFfrgmyefDKREYVKAIGFYREAEKHLTHVNDDIEKAEFHFKLAE--AYYIMKQNHISMHHvKQAMDIYNQYELYKVRK 178
Cdd:NF038310 153 YY-------DLGNYNLMLEYADEIEKNIEEIKNGFIKDSYEYRIKEllAYAYLRRNELEEAR-EYCNEIINSANNFPLLK 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 179 IQCHFVISGNYVdFKHFEKSLPHLEKALELSKQL--ERNERLLSSAYYNL-------GKNYADLGINDKADhflneaakv 249
Cdd:NF038310 225 ATAYYCLGESYI-FEDYEKALKYLEKSLELLKKIknKKIERKYKAFLNTLaflkiywNKDLDKIDILDPAE--------- 294

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 250 sesaklsnlphslftYAKFLFKQGKTSEAIKMSKKglsaaISQGDKLFVSLQKYLEALYINavDQAGIKKTIDYLERNKN 329
Cdd:NF038310 295 ---------------KAFLEIKKGNKEKAIKILEE-----LEKENGFLSPFQYYYLGLATN--DKELLKKSLEMFEKSGN 352


                 ....*
gi 757755524 330 YAYVE 334
Cdd:NF038310 353 YFYAQ 357
 
Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 4-65 4.60e-25

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


Pssm-ID: 436748  Cd Length: 62  Bit Score: 96.45  E-value: 4.60e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757755524    4 VLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINQMEEDEYLLIYFSLMKFRHQLMLD 65
Cdd:pfam18801   1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
100-337 2.74e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 2.74e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 100 SLFFRGMYEFDKREYVKAIGFYREAekhlthVNDDIEKAEFHFKLAEAYYIMKQnhismhhVKQAMDIYNQYELYKVRKI 179
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKA------LELDPDDAEALYNLGLAYLRLGR-------YEEALADYEQALELDPDDA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 180 QCHFVISGNYVDFKHFEKSLPHLEKALELSKQLernerllSSAYYNLGKNYADLGINDKADHFLNEAAKVSesaklSNLP 259
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKALELDPDD-------AEALYNLGLALLELGRYDEAIEAYERALELD-----PDDA 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757755524 260 HSLFTYAKFLFKQGKTSEAIKMSKKGLSAAIsqgDKLFVSLQKYLEALYINAVDQAGIKKTIDYLERNKNYAYVEDIA 337
Cdd:COG0457  145 DALYNLGIALEKLGRYEEALELLEKLEAAAL---AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 99-307 3.09e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 3.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524  99 YSLFFRGMYEFDKREYVKAIGFYREAekhlthVNDDIEKAEFHFKLAEAYYIMKQnhismhhVKQAMDIYNQYELYKVRK 178
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLLEEA------LELDPETVEAHLALGNLYRRRGE-------YDRAIRIHQKLLERDPDR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 179 IQCHFVISGNYVDFKHFEKSLPHLEKALELSKQLErnerllsSAYYNLGKNYADLGINDKADHFLNEAAKVSESAklsnl 258
Cdd:COG2956   76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA-------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN----- 143

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 757755524 259 PHSLFTYAKFLFKQGKTSEAIKMSKKGLS-------AAISQGDkLFVSLQKYLEAL 307
Cdd:COG2956  144 AHAYCELAELYLEQGDYDEAIEALEKALKldpdcarALLLLAE-LYLEQGDYEEAI 198
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
134-371 2.83e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.00  E-value: 2.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 134 DIEKAEFHFKLAEAYYIMKQNHISMHHVKQAMDIYNQYelykvrkIQCHFVISGNYVDFKHFEKSLPHLEKALELSKQLE 213
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALELDPDDA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 214 RnerllssAYYNLGKNYADLGINDKADHFLNEAAKVSesaklSNLPHSLFTYAKFLFKQGKTSEAIKMSKKGLSAAISQG 293
Cdd:COG0457   77 E-------ALNNLGLALQALGRYEEALEDYDKALELD-----PDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 294 D------KLFVSLQKYLEAlyINAVDQAGIKKTIDYLERNKNYAYVEDIAIDTAEVFAKSKEFETSYVYHQKMLETQKQI 367
Cdd:COG0457  145 DalynlgIALEKLGRYEEA--LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222


                 ....
gi 757755524 368 QRGE 371
Cdd:COG0457  223 LLLA 226
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 112-286 8.56e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 8.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 112 REYVKAiGFYREAEKHLTHVND-DIEKAEFHFKLAEAYYIMKQnhismhhVKQAMDIYNQYELYKVRKIQCHFVISGNYV 190
Cdd:COG2956   84 QDYLKA-GLLDRAEELLEKLLElDPDDAEALRLLAEIYEQEGD-------WEKAIEVLERLLKLGPENAHAYCELAELYL 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 191 DFKHFEKSLPHLEKALELSKQLERnerllssAYYNLGKNYADLGINDKADHFLNEAAKVSesaklSNLPHSLFTYAKFLF 270
Cdd:COG2956  156 EQGDYDEAIEALEKALKLDPDCAR-------ALLLLAELYLEQGDYEEAIAALERALEQD-----PDYLPALPRLAELYE 223

                        170
                 ....*....|....*.
gi 757755524 271 KQGKTSEAIKMSKKGL 286
Cdd:COG2956  224 KLGDPEEALELLRKAL 239
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 136-286 9.66e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.13  E-value: 9.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 136 EKAEFHFKLAEAYYIMKQNHISMHHVKQAMDIYNQYELYkvrkiqcHFVISGNYVDFKHFEKSLPHLEKALELSKQLern 215
Cdd:COG3914   76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEA-------LFNLGNLLLALGRLEEALAALRRALALNPDF--- 145

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 757755524 216 erllSSAYYNLGKNYADLGINDKADHFLNEAAKVSEsaklsNLPHSLFTYAKFLFKQGKTSEAIKMSKKGL 286
Cdd:COG3914  146 ----AEAYLNLGEALRRLGRLEEAIAALRRALELDP-----DNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
189-289 2.87e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 2.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 189 YVDFKHFEKSLPHLEKALELSKQlernerlLSSAYYNLGKNYADLGINDKADHFlNEAAKVSesaklSNLPHSLFTYAKF 268
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPD-------NADALNNLGLLLLEQGRYDEAIAL-EKALKLD-----PNNAEALLNLAEL 68

                         90       100
                 ....*....|....*....|.
gi 757755524 269 LFKQGKTSEAIKMSKKGLSAA 289
Cdd:COG3063   69 LLELGDYDEALAYLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 189-286 3.10e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 3.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 189 YVDFKHFEKSLPHLEKALELSKQLernerllSSAYYNLGKNYADLGINDKADHFLNEAAKVSEsaklsNLPHSLFTYAKF 268
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNN-------PELYYNLALLYSRSGDKDEAKEYYEKALALSP-----DNPNAYSNLAAL 131

                         90
                 ....*....|....*...
gi 757755524 269 LFKQGKTSEAIKMSKKGL 286
Cdd:COG5010  132 LLSLGQDDEAKAALQRAL 149
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 136-289 5.18e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 5.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 136 EKAEFHFKLAEAYYIMKQNHISMHHVKQAMDIYNQYELYKVRKIQChfvisgnYVDFKHFEKSLPHLEKALELSKQlern 215
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-------LLQLGDLDEAIVLLHEALELDPD---- 70

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 757755524 216 erlLSSAYYNLGKNYADLGINDKADHFLNEAAKVSesaklSNLPHSLFTYAKFLFKQGKTSEAIKMSKKGLSAA 289
Cdd:COG4783   71 ---EPEARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
lysogeny_AimR NF038310
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ...
 28-334 6.41e-03

AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny.


Pssm-ID: 468467  Cd Length: 363  Bit Score: 38.28  E-value: 6.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524  28 DAEILKAEVEQEINqmEEDEYLLIYFSLMKFRHQLMLDYLEPvttrirptiDELLEKIEASNKG-------ITGLLSYYS 100
Cdd:NF038310  84 EYELLKKLIEKEKN--SKNATNKEYAKVYELLYKRNKGEISG---------QELLDELEKKKKSkdpemkiLSDILLMYA 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 101 LFfrgmyefDKREYVKAIGFYREAEKHLTHVNDDIEKAEFHFKLAE--AYYIMKQNHISMHHvKQAMDIYNQYELYKVRK 178
Cdd:NF038310 153 YY-------DLGNYNLMLEYADEIEKNIEEIKNGFIKDSYEYRIKEllAYAYLRRNELEEAR-EYCNEIINSANNFPLLK 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 179 IQCHFVISGNYVdFKHFEKSLPHLEKALELSKQL--ERNERLLSSAYYNL-------GKNYADLGINDKADhflneaakv 249
Cdd:NF038310 225 ATAYYCLGESYI-FEDYEKALKYLEKSLELLKKIknKKIERKYKAFLNTLaflkiywNKDLDKIDILDPAE--------- 294

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757755524 250 sesaklsnlphslftYAKFLFKQGKTSEAIKMSKKglsaaISQGDKLFVSLQKYLEALYINavDQAGIKKTIDYLERNKN 329
Cdd:NF038310 295 ---------------KAFLEIKKGNKEKAIKILEE-----LEKENGFLSPFQYYYLGLATN--DKELLKKSLEMFEKSGN 352


                 ....*
gi 757755524 330 YAYVE 334
Cdd:NF038310 353 YFYAQ 357
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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