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Conserved domains on  [gi|75677992|gb|ABA19413|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Graydidascalus brachyurus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.69e-137

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 392.26  E-value: 1.69e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFTSLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.69e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 392.26  E-value: 1.69e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFTSLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-264 2.10e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 2.10e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  14 HHPRAVEAATKYFLVQAAASTLVLF-SSMI-------------NAWHTGQWDITLLTypPACLLLTTAIAIKLGLTPFHF 79
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgISLLygatgslnlagiaAALAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHM 224

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  80 WFPEVLQGSSLITALLLSTVMKL--------PPTTLLLTTSHSLNPtLLTTMSITSIILGGWMGLNQTQTRKIMAFSSIS 151
Cdd:COG1007 225 WTPDVYEGAPTPVTAFLATAPKIaafaallrLLVEAFPGLAADWQL-LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIA 303

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992 152 HLGWMMI-IIAYNPK-LTLLTFY--IYILMTTSIFLTM-----NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPP 222
Cdd:COG1007 304 HAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPP 383

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 75677992 223 LTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRLAY 264
Cdd:COG1007 384 TAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 5-232 1.04e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 92.38  E-value: 1.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992     5 SIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDIT-LLTYPPAC----------LLLTTAIAIKLG 73
Cdd:pfam00361  18 SYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDeLSKALTGGlnssgllllfLLILVGFLFKSA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    74 LTPFHFWFPEVLQGSSL-ITALLLSTVMKLPPTTLLLTTS--HSLNPT---LLTTMSITSIILGGWMGLNQTQTRKIMAF 147
Cdd:pfam00361  98 QVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAY 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   148 SSISHLGWMMIIIA----YNPKLTLLTFYIYILMTTSIFL--------TMNTTNTLKLSTLmtsWTKTPMLNTTLMLTLL 215
Cdd:pfam00361 178 SSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAML 254

                         250
                  ....*....|....*..
gi 75677992   216 SLAGLPPLTGFLPKWLI 232
Cdd:pfam00361 255 SLAGLPPTAGFLGKFLI 271
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-263 1.11e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.47  E-value: 1.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    17 RAVEAATKYFLVQAAASTLVLFSSMI--------------NAWHTGQWDITLLTYppACLLLTTAIAIKLGLTPFHFWFP 82
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedllLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    83 EVLQGSSLITALLLSTVMKLPPTTLLLTTS-------HSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGW 155
Cdd:TIGR01770 228 DVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   156 MMIIIAYNPKLTL--LTFY--IYILMTTSIFLTM------NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTG 225
Cdd:TIGR01770 308 ILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAG 387

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 75677992   226 FLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRLA 263
Cdd:TIGR01770 388 FFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.69e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 392.26  E-value: 1.69e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFTSLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-298 6.86e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 337.28  E-value: 6.86e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00070  35 INTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00070 115 LPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00070 195 TFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFTSLS 298
Cdd:MTH00070 275 LTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILS 332
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-298 1.34e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 329.07  E-value: 1.34e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00135  35 INTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSlNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00135 115 LPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00135 194 QFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQD 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTL-ISTFTSLS 298
Cdd:MTH00135 274 LPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAISTTAT 332
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-298 1.35e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 288.28  E-value: 1.35e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00105  35 MNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00105 115 VPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00105 195 PYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSN-KMKQWSTKNPTHTLISTFTSLS 298
Cdd:MTH00105 275 NIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENTKPMTLLPTLIILS 333
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-298 4.03e-82

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 251.43  E-value: 4.03e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00200  35 INTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00200 115 VPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00200 195 VYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQG 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFTSLS 298
Cdd:MTH00200 275 LFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLS 332
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-298 4.20e-73

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 228.28  E-value: 4.20e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00041  35 LNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00041 115 FPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00041 195 AYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFTSLS 298
Cdd:MTH00041 275 SILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILS 332
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-297 1.81e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 164.23  E-value: 1.81e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLtyppacLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00160  36 INLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFNNISS------MLINSSLLLKLGAAPFHFW 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLlttSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00160 110 FPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSM 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00160 187 MISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNN 266

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFTSL 297
Cdd:MTH00160 267 MFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSFISL 323
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-268 1.38e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 138.48  E-value: 1.38e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLtyppacllLTTAIAIKLGLTPFHFW 80
Cdd:MTH00144  35 INLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSMSL--------LLLGLCLKLGLFPFHFW 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLP-PTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMII 159
Cdd:MTH00144 107 VPSVMAGLSWLSCFLLLTWQKVApLFLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVA 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  160 IAYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTlMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQ 239
Cdd:MTH00144 187 ILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMES 265

                        250       260
                 ....*....|....*....|....*....
gi 75677992  240 EMTTTATIISMASLLGLFFYLRLAYCSTI 268
Cdd:MTH00144 266 SPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-295 5.45e-38

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 136.83  E-value: 5.45e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSminawhTGQWDITLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00011  37 LNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00011 111 FPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMIS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00011 191 VFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNS 270

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMKQWSTKNPTHTLISTFT 295
Cdd:MTH00011 271 MILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISMCTLS 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-279 1.94e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 127.48  E-value: 1.94e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHtgqwditLLTYPPACLLLTTAIAIKLGLTPFHFW 80
Cdd:MTH00197  29 LNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN-------LYLSLLSVVLVILGLLLKLGAFPFHFW 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHslNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:MTH00197 102 VPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  161 AYNPKLTLLTFYIYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQE 240
Cdd:MTH00197 180 VYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSN 259

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 75677992  241 MTTTATIISMASLLGLFFYLRLAYCSTITLPPNPSNKMK 279
Cdd:MTH00197 260 ISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-264 2.10e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 2.10e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  14 HHPRAVEAATKYFLVQAAASTLVLF-SSMI-------------NAWHTGQWDITLLTypPACLLLTTAIAIKLGLTPFHF 79
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgISLLygatgslnlagiaAALAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHM 224

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  80 WFPEVLQGSSLITALLLSTVMKL--------PPTTLLLTTSHSLNPtLLTTMSITSIILGGWMGLNQTQTRKIMAFSSIS 151
Cdd:COG1007 225 WTPDVYEGAPTPVTAFLATAPKIaafaallrLLVEAFPGLAADWQL-LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIA 303

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992 152 HLGWMMI-IIAYNPK-LTLLTFY--IYILMTTSIFLTM-----NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPP 222
Cdd:COG1007 304 HAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPP 383

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 75677992 223 LTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRLAY 264
Cdd:COG1007 384 TAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-262 3.38e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 97.79  E-value: 3.38e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMI-SKSHHPRAVEAATKYFLVQAAASTLVLFS-------------SMINAWHTGQWDITLLTYPPACLLLTT 66
Cdd:MTH00196  24 LQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSVSVPIGYLLIIV 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   67 AIAIKLGLTPFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLttSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMA 146
Cdd:MTH00196 104 ALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  147 FSSISHLGWMMIIIAYNP----KLTLLTFYIYILMTTSIFLTMNTTNTLK--LSTLMTSWTKTPMLNTTLMLTLLSLAGL 220
Cdd:MTH00196 182 YSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGI 261

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 75677992  221 PPLTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRL 262
Cdd:MTH00196 262 PPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
17-262 3.04e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.04  E-value: 3.04e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   17 RAVEAATKYFLVQAAASTLVL--------------FSSMINAWHTGQWDITLLTYppACLLLTTAIAIKLGLTPFHFWFP 82
Cdd:PRK05777 151 RSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKALADGSGNSLLLLF--GLVFLLVGLAFKLSAVPFHMWTP 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   83 EVLQGSSLITALLLSTVMKL--------PPTTLLLTTSHSLNPtLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLG 154
Cdd:PRK05777 229 DVYEGAPTPVTAFLATAPKIaafavllrLLVVAFGGLSEDWQQ-VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAG 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  155 WMMIIIAYNPKLTL--LTFY--IYILMTTSIF--LTMNTTNTLKLSTLmTSWT----KTPMLNTTLMLTLLSLAGLPPLT 224
Cdd:PRK05777 308 YLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTA 386

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 75677992  225 GFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRL 262
Cdd:PRK05777 387 GFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 5-232 1.04e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 92.38  E-value: 1.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992     5 SIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDIT-LLTYPPAC----------LLLTTAIAIKLG 73
Cdd:pfam00361  18 SYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDeLSKALTGGlnssgllllfLLILVGFLFKSA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    74 LTPFHFWFPEVLQGSSL-ITALLLSTVMKLPPTTLLLTTS--HSLNPT---LLTTMSITSIILGGWMGLNQTQTRKIMAF 147
Cdd:pfam00361  98 QVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAY 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   148 SSISHLGWMMIIIA----YNPKLTLLTFYIYILMTTSIFL--------TMNTTNTLKLSTLmtsWTKTPMLNTTLMLTLL 215
Cdd:pfam00361 178 SSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAML 254

                         250
                  ....*....|....*..
gi 75677992   216 SLAGLPPLTGFLPKWLI 232
Cdd:pfam00361 255 SLAGLPPTAGFLGKFLI 271
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 17-262 2.81e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.46  E-value: 2.81e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   17 RAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDI----TLLTYPPACLLLTTAIAIKLGLTPFHFWFPEVLQGSSLIT 92
Cdd:MTH00199 145 YSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTIT 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   93 ALLLSTVMKLPPTTLLLTTSHSLNPTLLTtmSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIIIAYNP----KLTL 168
Cdd:MTH00199 225 TALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASL 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  169 LTFYIYILMTT---SIFLTMNTTNTLKLSTLMTSwTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTA 245
Cdd:MTH00199 303 IYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLIC 381

                        250
                 ....*....|....*..
gi 75677992  246 TIISMASLLGLFFYLRL 262
Cdd:MTH00199 382 IIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-263 1.11e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.47  E-value: 1.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    17 RAVEAATKYFLVQAAASTLVLFSSMI--------------NAWHTGQWDITLLTYppACLLLTTAIAIKLGLTPFHFWFP 82
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedllLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    83 EVLQGSSLITALLLSTVMKLPPTTLLLTTS-------HSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGW 155
Cdd:TIGR01770 228 DVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   156 MMIIIAYNPKLTL--LTFY--IYILMTTSIFLTM------NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTG 225
Cdd:TIGR01770 308 ILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAG 387

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 75677992   226 FLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRLA 263
Cdd:TIGR01770 388 FFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-262 4.85e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 4.85e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLL-----TYPP-----ACLLLTTAIAI 70
Cdd:COG0651 138 VMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaELDPglllaAFALLLVGFGI 217

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  71 KLGLTPFHFWFPEVL-QGSSLITALLlSTVM---------KLPPTTLLLTTSHSLNPTLLTtMSITSIILGGWMGLNQTQ 140
Cdd:COG0651 218 KAALFPLHFWLPDAYpAAPSPVSALL-SGLLtkvgvyailRVLTLLFGADPALFLGTLLLV-LGLLTMLVGALGALAQRD 295

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992 141 TRKIMAFSSISHLGWMMIIIAYNPKLTLLTFYIYI----LMTTSIFLT----MNTTNTLKLSTLMTSWTKTPMLNTTLML 212
Cdd:COG0651 296 LKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLI 375

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|
gi 75677992 213 TLLSLAGLPPLTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRL 262
Cdd:COG0651 376 GALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-264 1.83e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 70.29  E-value: 1.83e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    1 INTLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLT--YPPACLLLT------TAIAIKL 72
Cdd:PRK08375 137 IMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALALKA 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   73 GLTPFHFWFPEVLQG-SSLITALLLSTVMK----------LPPTTLLLTTSHSLNPTLLTTMSItSIILGGWMGLNQTQT 141
Cdd:PRK08375 217 AVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLGWLLAVLALL-SMLVGSLAALGQDDV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  142 RKIMAFSSISHLGWMMIIIAYNPKLTLL--TFYI--YILMTTSIFLT----MNTTNTLKLSTLMTSWTKTPMLNTTLMLT 213
Cdd:PRK08375 296 KRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAVA 375

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 75677992  214 LLSLAGLPPLTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRLAY 264
Cdd:PRK08375 376 SLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
 17-229 2.79e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.65  E-value: 2.79e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   17 RAVEAATKYFLVQAAASTLVL--FSSM--INAWHTGQWDI------TLLTYPPACLL----LTTAIAIKLGLTPFHFWFP 82
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   83 EVLQGS-----------SLITALLLSTVMKLPPTTLLLTTSHSLnptlLTTMSITSIILGGWMGLNQTQTRKIMAFSSIS 151
Cdd:CHL00049 239 DVYEGSptpvvaflsvtSKVAASALATRIFDIPFYFSSNEWHLL----LEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  152 HLGWMMI-IIAYNPKL---TLLTF-YIYILMTTSIF----LTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPP 222
Cdd:CHL00049 315 QIGYVIIgIIVGDSNDgyaSMITYmLFYIFMNLGTFacivLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPP 394


                 ....*..
gi 75677992  223 LTGFLPK 229
Cdd:CHL00049 395 LAGFFGK 401
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 62-262 2.22e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.19  E-value: 2.22e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   62 LLLTTAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLttSHSLNPTLLTTMSITSIILGGWMGLNQTQT 141
Cdd:MTH00198 303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLT--SLVITSKLLLSVAIISLVVGAFGALNQTRI 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  142 RKIMAFSSISHLGWMMIIIAYNPKLTLLTFYIYILM-TTSIFLTMNTTNTL------------------------KLSTL 196
Cdd:MTH00198 381 KRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALASFTVICTLeefgtrtptsrqrdgsfgnynlvrRLVDL 460

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677992  197 MTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTATIISMASLLGL-------FFYLRL 262
Cdd:MTH00198 461 TILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVALFAIictcisaFYYIRI 533
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 6-264 7.04e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 62.71  E-value: 7.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    6 IIPMISKshhpRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDI----------TLLTYPPACLLLTTAIAI-KLGL 74
Cdd:PRK08668 137 MVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLLAFGVaKAGI 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   75 TPFHFWFPE-----------VLQGS-----SLITALLLSTVMKL-PPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLN 137
Cdd:PRK08668 213 FPLHVWAPDayseapqsfsaVLSGQlsklgAYGFLLVLYVLPGTkLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAIL 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  138 QTQTRKIMAFSSISHLGWMMIIIAYNPKLTLL--TFYI--YILMTTSIFLTMNT----TNTLKLSTLMTSWTKTPMLNTT 209
Cdd:PRK08668 293 QEDIKKLIAYSSVANGGYILVGLGLGTSLGFAggLFHVfnHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAM 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677992  210 LMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRLAY 264
Cdd:PRK08668 373 YLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 4-161 1.13e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.64  E-value: 1.13e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   4 LSIIPM---ISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQW-----DITLLTYPPA-----CLLLTTAIAI 70
Cdd:COG1008 142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  71 KLGLTPFHFWFPEVLQGSSLITALLLSTVMKLP--------PTTLLLTTSHSLNPTLLTtMSITSIILGGWMGLNQTQTR 142
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMggygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLK 300

                       170
                ....*....|....*....
gi 75677992 143 KIMAFSSISHLGWMMIIIA 161
Cdd:COG1008 301 RLIAYSSVSHMGFVLLGIF 319
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
16-229 6.36e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.68  E-value: 6.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   16 PRAVEAATKYFLVQAAASTLVLF-SSMINAWHTGQWDIT-----LLTYPPACLLLT-----TAIAIKLGLTPFHFWFPEV 84
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialaLITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   85 LQGSSLITALLLSTVMKLPPTTLLLTTSHSLNP-------TLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMM 157
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  158 I--IIAYNPKLTLLTFY--IYILMT----TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK02504 317 IglVAGTEAGYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-232 1.35e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.57  E-value: 1.35e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   16 PRAVEAATKYFLVQAAASTLVLFSSminAWHTGQWDITLLTYPP-------------ACLLLTTAIAIKLGLTPFHFWFP 82
Cdd:PRK08376 168 WEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAvkmsenptvvakiALALFIAGLAMKSGAVPVHMWLP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   83 EVL-QGSSLITALLLstVMKLPPTTLLLTTSHSL-NPTLLTT--------MSITSIILGGWMGLNQTQTRKIMAFSSISH 152
Cdd:PRK08376 245 DAYpAAPSSISAMLL--VIKQAGLYALARVLFSIyGPAINLAtvgwviiiLGCLTMFVGVAMAVVQKDVKRLLAYHSVSQ 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  153 LGWMMI-----IIAYNPklTLLTFYIYILMTTSIFLTMN--------------------TTNTLKLSTLMTswtKTPMLN 207
Cdd:PRK08376 323 IGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNhalykallfltagaviyetgTRNLNELGGLAR---TMPKTT 397

                        250       260
                 ....*....|....*....|....*
gi 75677992  208 TTLMLTLLSLAGLPPLTGFLPKWLI 232
Cdd:PRK08376 398 IAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 16-232 8.32e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.02  E-value: 8.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    16 PRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQW----DITLLTYPPAC-----LLLTTAIAIKLGLTPFHFWFPEVLQ 86
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    87 GSSLITALLLSTVMKLPPTTLLLTTSHSLNP-------TLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMII 159
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   160 IAYNPKLTLLTFYIYI----LMTTSIFLTMNT----TNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWL 231
Cdd:TIGR01972 312 IFSFNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  .
gi 75677992   232 I 232
Cdd:TIGR01972 392 I 392
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-258 1.01e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 52.85  E-value: 1.01e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  14 HHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLL-----------TYPPACLLLTTAIAIKLGLTPFHFWFP 82
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  83 EVLQG----SSLI------TA---LL--LSTVMklppttlllttshSLNPTLLTTMSIT---SIILGGWMGLNQTQTRKI 144
Cdd:COG1009 236 DAMEGptpvSALLhaatmvKAgvyLLarLSPLF-------------ALSPVWLTVVAIIgaiTALFAALIALAQTDIKRV 302

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992 145 MAFSSISHLGWMMIIIAynpkLTLLTFYIYILMTTSIF------------LTMNTTNTLKLSTLmtsWTKTPMLNTTLML 212
Cdd:COG1009 303 LAYSTVSQLGYMFLALG----VGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLI 375

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 75677992 213 TLLSLAGLPPLTGFLPKWLITQELIkqEMTTTATIISMASLLGLFF 258
Cdd:COG1009 376 GALSLAGIPPFAGFFSKEAILEAAL--EAGGLGPLLLAVALLGAFL 419
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 57-232 2.53e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 51.84  E-value: 2.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   57 YPPACLLLTTAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPT-----LLTTMSITSIILG 131
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  132 GWMGLNQTQTRKIMAFSSISHLGWMMIIIAYNPKLTLLTFYIYI----LMTTSIFLTMNT----TNTLKLSTLMTSWTKT 203
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAM 353

                        170       180
                 ....*....|....*....|....*....
gi 75677992  204 PMLNTTLMLTLLSLAGLPPLTGFLPKWLI 232
Cdd:PRK12647 354 PITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 4-161 7.51e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.20  E-value: 7.51e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    4 LSIIPM---ISKSHHPRAVEAATKYFLVQAAASTLVLFSSM----INAWHTGQWDITLLTYPPACLLLTT--------AI 68
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   69 AIKLGLTPFHFWFPEVLQ-----GSSLITALLLSTV---MKLPPTTLLLTTSHSLNPtLLTTMSITSIILGGWMGLNQTQ 140
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVqaptaGSVLLAGILLKMGaygLLRFSLPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTD 300

                        170       180
                 ....*....|....*....|.
gi 75677992  141 TRKIMAFSSISHLGWMMIIIA 161
Cdd:PRK05846 301 IKKLIAYSSISHMGFVTLGIF 321
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-229 9.19e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 50.21  E-value: 9.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   14 HHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPAC--------LLLTTAIAIKLGLT------PFHF 79
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   80 WFPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPT-----LLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLG 154
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  155 WMMIIIAYNPK--------------LTLLTFYIYILMTTSIFLTMNTTNTL-KLSTLMtswTKTPMLNTTLMLTLLSLAG 219
Cdd:PRK12649 316 YLMTMYGYTTYhepglgvaaatfhlLNHATFKACLFLVAGIVAHEAATRDIrKLGGLR---KEMPITFIVASIAALAMAG 392

                        250
                 ....*....|
gi 75677992  220 LPPLTGFLPK 229
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 46-229 1.57e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.54  E-value: 1.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   46 HTGQWDIT-LLTYPPACLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLN- 116
Cdd:PRK12644 183 AAGTYRLSeLLADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFAd 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  117 -----PTLLTtMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIIIAYNPK------LTLLTfyIYILMTTSIFLTM 185
Cdd:PRK12644 263 vpvwrPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLL--AHALFKAALFLVV 339

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 75677992  186 ----NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK12644 340 giidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12650 PRK12650
DUF4040 family protein;
64-229 3.94e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.12  E-value: 3.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   64 LTTAIAIKLGLT--------PFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTS--HSLNPT---LLTTMSITSIIL 130
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  131 GGWMGLNQTQTRKIMAFSSISHLGWMMIIIAYNPKLTLLTFYIYI----LMTTSIFLTM----NTTNTLKLSTLMTSWTK 202
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                        170       180
                 ....*....|....*....|....*..
gi 75677992  203 TPMLNTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 21-161 6.47e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 47.33  E-value: 6.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   21 AATKYFLVQAAASTLVLFSSMINAWHTGQ--WDITLLT---YPPACLLLT-----TAIAIKLGLTPFHFWFPEVL-QGSS 89
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992   90 LITALLLSTVMKL------PPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIIIA 161
Cdd:PRK12561 218 PVSMILAGVLLKMggyaliRFNVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 118-262 1.89e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 1.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  118 TLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIIIAYNPKLTLLTFYIYI----LMTTSIFLTMNTT----N 189
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfG 359

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677992  190 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRL 262
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
21-169 5.39e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 5.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   21 AATKYFLVQAAASTLVLFSSMINAWHTGQWDITLLTYPPACLLLTTAI----------AIKLGLTPFHFWFPEVLQGSSL 90
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLSTQLlllapilvgfGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   91 ITALLLSTVMKLPPTTLLLTTSHSLNPTL-------LTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIIIAYN 163
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 75677992  164 PKLTLL 169
Cdd:PRK06473 318 TPLSIL 323
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
17-294 1.35e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.10  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   17 RAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDIT-----LLTYPP------ACLLLTTAIAIKLGLTPFHFWFPEV- 84
Cdd:PRK06277 147 EAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITdihnaLLVNPTspviygGLLLLIFGLLYGSGLPPFHTIKSDIy 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   85 ----------LQGSSLITALLLSTVM-KLPPTTLLLTTSHslnpTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHL 153
Cdd:PRK06277 227 akakpfgsalLQTFSKFVLVALMLVIfKLFGGLSYFPSAQ----GVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQG 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  154 GWMMIIIAYNPKLT----LLTFYIYILMTTSIFL----TMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTG 225
Cdd:PRK06277 303 GYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNG 382

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 75677992  226 FLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRLAYcsTITLPPNPsNKMKQWSTKNPTHTLISTF 294
Cdd:PRK06277 383 FQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP-EELEYKNKKVPKYAVFSLA 448
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 25-160 2.89e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 2.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   25 YFLVQAAASTLVLFSSMINAW-HTGQWDITLLTYPPAC-----LLLTTAIAIKLGLTPFHFWFPEVLQGS-SLITALLLS 97
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSALMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 75677992   98 TVMKLPPTTLLLTTSHSLNP-----TLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIII 160
Cdd:PRK08667 246 VMLKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-158 2.97e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 2.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992    3 TLSIIPMISKSHHPRAVEAATKYFLVQAAASTLVLFSSMINAWHTGQWDIT-LLTYPPACL-LLTTAIAIKLGLTPFHFW 80
Cdd:PRK07234 127 SIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSgLATADPEAFaLIALGLLVKGGIFVSGLW 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   81 FPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPT--LLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMI 158
Cdd:PRK07234 207 LPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA 286
PRK12646 PRK12646
DUF4040 family protein;
57-257 6.34e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 41.28  E-value: 6.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   57 YPPACLLLTTAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPT-----LLTTMSITSIILG 131
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFG 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  132 GWMGLNQTQTRKIMAFSSISHLGWMMIII------AYNPKLTLLTFYIYIL-------MTTSIF---LTM------NTTN 189
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMIMAMVgigggyAQHQQDAIASIYVFVLfaalfhlMNHAIFkcaLFMgvgiidHEAG 368

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 75677992  190 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI------TQELIKQEMTTTATIISMASLLGLF 257
Cdd:PRK12646 369 TRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFldaltqTGQLSQFSLISMIIIVFIGVIASIF 442
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
118-262 9.13e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.70  E-value: 9.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  118 TLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLGWMMIIIAYNPKLTL--LTFY---IYILMTTSIFLT---MNTTN 189
Cdd:PRK12663 273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngAIFYlvhDMVVKTALFLIAgslVRLTG 352

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677992  190 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTATIISMASLLGLFFYLRL 262
Cdd:PRK12663 353 YRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-229 1.25e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.34  E-value: 1.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   62 LLLTTAIAIKLGLTPFHFWFPEVL-QGSSLITAL---LLSTV--MKLPPTTLLLTTSHSLNpTLLTTMSITSIILGGWMG 135
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVfagLLTKVgvYAIIRTHTLLFPGGGLD-TLLMVVALLTMVVGILGA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  136 LNQTQTRKIMAFSSISHLGWMMIIIAYNPKLTL--LTFYI--YILMTTSIFLTMN-------TTNTLKLSTLMTSwtkTP 204
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgAIYYVahHITVQTTLFLVVGlierqagSSSLRRLGGLAKA---SP 368

                        170       180
                 ....*....|....*....|....*
gi 75677992  205 MLNTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK12665 369 LLAVLFFVPALNLGGIPPFSGFIGK 393
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 19-176 1.73e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 39.74  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   19 VEAATKYFLVQAAA------STLVLFSSMINAWHTGQWDITLLT-----YPPACLLLT-----TAIAIKLGLTPFHFWFP 82
Cdd:PRK08676 151 IDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLP 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   83 EV-LQGSSLITALLLSTVMKL-------PPTTLLLTTSHSLNPTLLTTMSITSIILGGWMGLNQTQTRKIMAFSSISHLG 154
Cdd:PRK08676 231 AAyAKAPSVVSALLSGTVLNIgiygilrLSALLRQSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMG 310

                        170       180
                 ....*....|....*....|..
gi 75677992  155 WMMIIIAYNPKLTLLTFYIYIL 176
Cdd:PRK08676 311 LMLLGIGIGTPLALFWMLFHML 332
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
62-234 2.48e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.31  E-value: 2.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   62 LLLTTAI----AIKLGLTPFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTL-------LTTMSITSIIL 130
Cdd:PRK07363 205 LILLTGLllgfGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTwslvapgLAIIGTISVIY 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  131 GGWMGLNQTQTRKIMAFSSISHLGWMMIIIAYNPKLTL-----------LTFYIYILMTTSIFLTMNTTNTLKLSTLMTS 199
Cdd:PRK07363 285 GALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLlgavaqmishgLILALLFHLVGIVERKVGTRDLDVLNGLMNP 364

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 75677992  200 WTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQ 234
Cdd:PRK07363 365 IRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
76-158 4.33e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.47  E-value: 4.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   76 PFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTS--HSLNPTLLTTMSITSII---LGGWMGLNQTQTRKIMAFSSI 150
Cdd:PRK07376 245 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYpvFEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTI 324


                 ....*...
gi 75677992  151 SHLGWMMI 158
Cdd:PRK07376 325 SQLGYMVM 332
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 71-234 5.38e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.40  E-value: 5.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   71 KLGLtpfHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSIT-----SIILGGWMGLNQTQTRKIM 145
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  146 AFSSISHLGWMMIIIAYNPKLTLLTFYIY---------ILMTTSIFLTMNT--TNTLKLSTLMTSwtkTPMLNTTLMLTL 214
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIEGSHNVGLFHLVnhaffkallFLSAGSVIHSTTVdeQDMRKMGGLIHS---IPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|
gi 75677992  215 LSLAGLPPLTGFLPKWLITQ 234
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLILE 414
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 67-185 8.92e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.59  E-value: 8.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   67 AIAIKLGLTPFHFWFPEV-----LQGSSLITALLLST---VMKLPPTTLLLTTSHSLNPTLLtTMSITSIILGGWMGLNQ 138
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLggyGLVRLSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 75677992  139 TQTRKIMAFSSISHLGWMMIiiaynpklTLLTFYIyILMTTSIFLTM 185
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSI--------TLVTHDI-IGLTGSIFIML 355
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 61-271 9.50e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 37.36  E-value: 9.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992   61 CLLLTTAIAIKLGLTPFHFWFPEVLQGSSLITALLLSTVMKLPPTTLLLTTSHSLNPTLLTTMSITSI-----ILGGWMG 135
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTIVgsltvFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677992  136 LNQTQTRKIMAFSSISHLGWMMIIIAynpkltlLTFY---IYILMTTSIFLTM-------------NTTNTLKLSTLMTS 199
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNHAFFKALlflsagsvihalsDEQDMRKMGGLISF 365

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677992  200 wtkTPMLNTTLMLTLLSLAGLPPLTGFLPKWLITQELIKQEMTTTAT-IISMASLLGLFFYLRLAYCSTITLP 271
Cdd:MTH00020 366 ---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYwLGCFSALLTAFYSIRLIYLTFLSNT 435
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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