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Conserved domains on  [gi|75677978|gb|ABA19406|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Aratinga solstitialis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 3.38e-138

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 393.80  E-value: 3.38e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 3.38e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 393.80  E-value: 3.38e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 16-234 2.10e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.00  E-value: 2.10e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    16 PRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSC-----------LLLTTAIAIKLGLVPFHFWFPEV 84
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssgllllfLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    85 LQGTSF-ITALLLSTVMKLPPITILLITSHSLNST-----LLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI 158
Cdd:pfam00361 109 YEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   159 II----IYNPKLTLLTFYIYTLMTVSIFL-----TMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 75677978   230 WLIIQ 234
Cdd:pfam00361 269 FLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-242 4.47e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.57  E-value: 4.47e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  14 HHPRAIEATTKYFLVQAAASALLLF--------SGTTN----AWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFWF 81
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWT 226

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  82 PEVLQGTSFITALLLSTVMKL----PPITILLITSHSLNS---TLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIG 154
Cdd:COG1007 227 PDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978 155 WMTIIIIYNPKLTL--LTFY--IYTLMTVSIFLTMDTTNTMNLPTLMTS-----WTKTPMLSTTLMLTLLSLAGLPPLTG 225
Cdd:COG1007 307 YLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAG 386

                       250
                ....*....|....*..
gi 75677978 226 FLPKWLIIQELIKQELT 242
Cdd:COG1007 387 FFGKFYVFSAAVEAGLY 403
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-263 2.36e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.70  E-value: 2.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    17 RAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSC------------LLLTTAIAIKLGLVPFHFWFPEV 84
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDV 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    85 LQGTSFITALLLSTVMKLPPITILL-------ITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMT 157
Cdd:TIGR01770 230 YEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYIL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   158 IIIIYNPKLTL--LTFY--IYTLMTVSIFLTMDTTNTMNLP-----TLMTSWTKT-PMLSTTLMLTLLSLAGLPPLTGFL 227
Cdd:TIGR01770 310 IGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFF 389

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 75677978   228 PKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLA 263
Cdd:TIGR01770 390 GKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 3.38e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 393.80  E-value: 3.38e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-298 2.24e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 328.42  E-value: 2.24e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00070  35 INTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00070 115 LPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00070 195 TFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00070 275 LTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILS 332
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-290 3.37e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 325.61  E-value: 3.37e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00135  35 INTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPItILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00135 115 LPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00135 194 QFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQD 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNIL 290
Cdd:MTH00135 274 LPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTL 323
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-298 3.39e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 284.82  E-value: 3.39e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00105  35 MNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00105 115 VPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00105 195 PYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSN-KMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00105 275 NIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENTKPMTLLPTLIILS 333
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-298 6.23e-87

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 263.75  E-value: 6.23e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00200  35 INTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00200 115 VPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00200 195 VYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQG 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00200 275 LFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLS 332
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-298 1.10e-73

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 229.82  E-value: 1.10e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00041  35 LNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00041 115 FPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00041 195 AYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00041 275 SILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILS 332
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-298 4.19e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 163.46  E-value: 4.19e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWytgqwdITQLSHPPSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00160  36 INLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLINSSLLLKLGAAPFHFW 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILlitSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00160 110 FPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSM 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00160 187 MISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNN 266

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLppNPSNKMKQWATKSPTNILIPTFASLS 298
Cdd:MTH00160 267 MFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNKFSLILNFLSFIS 322
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-296 6.84e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 144.54  E-value: 6.84e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFsGTTNAWYTgqwdITQLSHPPScLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00011  37 LNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLL-GMTMMWSF----PSLLKNITA-LMLLVSLMLKLGMAPCHFW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00011 111 FPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMIS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00011 191 VFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNS 270

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYcSTITLPPNPSNkMKQWATKSPTNILIPTFAS 296
Cdd:MTH00011 271 MILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-LKSAPYEPKTKILISMCTL 324
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-285 2.26e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 143.10  E-value: 2.26e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITqlshppscLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00144  35 INLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFPFHFW 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPI-TILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTII 159
Cdd:MTH00144 107 VPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVA 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  160 IIYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLpTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQ 239
Cdd:MTH00144 187 ILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMES 265

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 75677978  240 ELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKS 285
Cdd:MTH00144 266 SPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-279 8.98e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 133.64  E-value: 8.98e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGttnaWYTGQWDITQLShppSCLLLTTAIAIKLGLVPFHFW 80
Cdd:MTH00197  29 LNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG----SLSFSNLYLSLL---SVVLVILGLLLKLGAFPFHFW 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   81 FPEVLQGTSFITALLLSTVMKLPPITILLITSHslNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00197 102 VPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  161 IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00197 180 VYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSN 259

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 75677978  241 LTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMK 279
Cdd:MTH00197 260 ISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 16-234 2.10e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.00  E-value: 2.10e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    16 PRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSC-----------LLLTTAIAIKLGLVPFHFWFPEV 84
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssgllllfLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    85 LQGTSF-ITALLLSTVMKLPPITILLITSHSLNST-----LLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI 158
Cdd:pfam00361 109 YEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   159 II----IYNPKLTLLTFYIYTLMTVSIFL-----TMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 75677978   230 WLIIQ 234
Cdd:pfam00361 269 FLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-242 4.47e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.57  E-value: 4.47e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  14 HHPRAIEATTKYFLVQAAASALLLF--------SGTTN----AWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFWF 81
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWT 226

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  82 PEVLQGTSFITALLLSTVMKL----PPITILLITSHSLNS---TLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIG 154
Cdd:COG1007 227 PDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978 155 WMTIIIIYNPKLTL--LTFY--IYTLMTVSIFLTMDTTNTMNLPTLMTS-----WTKTPMLSTTLMLTLLSLAGLPPLTG 225
Cdd:COG1007 307 YLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAG 386

                       250
                ....*....|....*..
gi 75677978 226 FLPKWLIIQELIKQELT 242
Cdd:COG1007 387 FFGKFYVFSAAVEAGLY 403
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-262 1.34e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 93.17  E-value: 1.34e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLI-SKSHHPRAIEATTKYFLVQAAASALLLFS-----GTT--------NAWYTGQWDITQLSHPPSCLLLTT 66
Cdd:MTH00196  24 LQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcGTTgglhlsyiNLVLNSGQSFSSVSVPIGYLLIIV 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   67 AIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPPITILLitSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMA 146
Cdd:MTH00196 104 ALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  147 FSSISHIGWMTIII----IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTMN--LPTLMTSWTKTPMLSTTLMLTLLSLAGL 220
Cdd:MTH00196 182 YSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGI 261

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 75677978  221 PPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRL 262
Cdd:MTH00196 262 PPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
17-262 8.51e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 91.81  E-value: 8.51e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   17 RAIEATTKYFLVQAAASALLLF--------SGTTNAWYTGQWDITQLSHPP----SCLLLTTAIAIKLGLVPFHFWFPEV 84
Cdd:PRK05777 151 RSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSFAGIAKALADGSGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDV 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   85 LQGTSFITALLLSTVMKLPPITILL-------ITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMT 157
Cdd:PRK05777 231 YEGAPTPVTAFLATAPKIAAFAVLLrllvvafGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLL 310

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  158 IIIIYNPKLTL--LTFY--IYTLMTVSIF--LTMDTTNTMNLPTLmTSWT----KTPMLSTTLMLTLLSLAGLPPLTGFL 227
Cdd:PRK05777 311 VGLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFW 389

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 75677978  228 PKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRL 262
Cdd:PRK05777 390 GKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-263 2.36e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.70  E-value: 2.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    17 RAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSC------------LLLTTAIAIKLGLVPFHFWFPEV 84
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDV 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    85 LQGTSFITALLLSTVMKLPPITILL-------ITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMT 157
Cdd:TIGR01770 230 YEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYIL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   158 IIIIYNPKLTL--LTFY--IYTLMTVSIFLTMDTTNTMNLP-----TLMTSWTKT-PMLSTTLMLTLLSLAGLPPLTGFL 227
Cdd:TIGR01770 310 IGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFF 389

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 75677978   228 PKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLA 263
Cdd:TIGR01770 390 GKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 17-233 4.30e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 83.91  E-value: 4.30e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   17 RAIEATTKYFLVQAAASALLLF--------SGTT-----NAWYTGQWditqlshppSCLLLTTAIAIKLGLVPFHFWFPE 83
Cdd:MTH00199 145 YSTEAGLKYFVLGAVSSGLFLFgcallyglTGETsiqgiNSILTGDV---------GKILITISLLFKLSAAPFHMWAPD 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   84 VLQGTSFITALLLSTVMKLPPITILLITSHSLNSTLLTSmsIMSIALGGWMGLNQTQTRKIMAFSSISHIGW----MTII 159
Cdd:MTH00199 216 VYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIG 293

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 75677978  160 IIYNPKLTLLTFYIYTLMTVSIFLTMDTTN-TMNLPTLMTSWT-KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLII 233
Cdd:MTH00199 294 SFESIQASLIYMIIYVIMSICSFSIILSLKlTKGLIVEVSGLSrKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-237 4.17e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.88  E-value: 4.17e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSH-----PPS-----CLLLTTAIAI 70
Cdd:COG0651 138 VMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaelDPGlllaaFALLLVGFGI 217

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  71 KLGLVPFHFWFPEVL-QGTSFITALLLSTVMKLPPITILLI-------TSHSLNSTLLTSMSIMSIALGGWMGLNQTQTR 142
Cdd:COG0651 218 KAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILRVltllfgaDPALFLGTLLLVLGLLTMLVGALGALAQRDLK 297

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978 143 KIMAFSSISHIGWMTIII-IYNPK-LTLLTFYI--YTLMTVSIFLT----MDTTNTMNLPTLMTSWTKTPMLSTTLMLTL 214
Cdd:COG0651 298 RLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGA 377

                       250       260
                ....*....|....*....|...
gi 75677978 215 LSLAGLPPLTGFLPKWLIIQELI 237
Cdd:COG0651 378 LALAGLPPLSGFVSKWLLLQAAL 400
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 62-238 1.23e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.04  E-value: 1.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   62 LLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLppITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQT 141
Cdd:MTH00198 303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRI 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  142 RKIMAFSSISHIGWMTIII-------IYNPKLTLLTFYIYTLMTVSIFLTMDTTNTM------------------NLPTL 196
Cdd:MTH00198 381 KRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTRtptsrqrdgsfgnynlvrRLVDL 460

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 75677978  197 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 238
Cdd:MTH00198 461 TILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIK 502
ndhB CHL00049
NADH dehydrogenase subunit 2
 17-229 1.96e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.03  E-value: 1.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   17 RAIEATTKYFLVQAAASALLL--FSgttnaWYTGQ-------WDI------TQLSHPPSCLL----LTTAIAIKLGLVPF 77
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   78 HFWFPEVLQG-----------TSFITALLLSTVMklppITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMA 146
Cdd:CHL00049 234 HQWTPDVYEGsptpvvaflsvTSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLA 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  147 FSSISHIGWMTIIII-------YNPKLTLLTFYIY-TLMTVS-IFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSL 217
Cdd:CHL00049 310 YSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFmNLGTFAcIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSL 389

                        250
                 ....*....|..
gi 75677978  218 AGLPPLTGFLPK 229
Cdd:CHL00049 390 GGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 4-158 4.14e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.18  E-value: 4.14e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   4 LSIIP---LISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQW--DITQLSH---PPS-----CLLLTTAIAI 70
Cdd:COG1008 142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  71 KLGLVPFHFWFPEVL-QGTSFITALLLSTVMKLP-------PITILLITSHSLnSTLLTSMSIMSIALGGWMGLNQTQTR 142
Cdd:COG1008 222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKMGgygllrfALPLFPEASAYF-APLLAALGVIGIIYGALVALAQTDLK 300

                       170
                ....*....|....*.
gi 75677978 143 KIMAFSSISHIGWMTI 158
Cdd:COG1008 301 RLIAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-295 4.45e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.89  E-value: 4.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    1 INTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFS-GTTNAwYTGQWDITQLSH--PPSCLLLT------TAIAIK 71
Cdd:PRK08375 137 IMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALALK 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   72 LGLVPFHFWFPEVLQGTS-FITALLLSTVMKLPPITILLITSH---------SLNSTLLTSMSIMSIALGGWMGLNQTQT 141
Cdd:PRK08375 216 AAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALIRIYFTvfggdfrfaLGLGWLLAVLALLSMLVGSLAALGQDDV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  142 RKIMAFSSISHIGWMTIIIIYNPKLTLL--TFYI--YTLMTVSIFLT----MDTTNTMNLPTLMTSWTKTPMLSTTLMLT 213
Cdd:PRK08375 296 KRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAVA 375

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  214 LLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNkmkQWATKSPTNILIPT 293
Cdd:PRK08375 376 SLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSE---APKQEAPLGMLAPS 452


                 ..
gi 75677978  294 FA 295
Cdd:PRK08375 453 LA 454
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-232 1.09e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 1.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   16 PRAIEATTKYFLVQAAASALLLFS--------GTTNAWYTGqwdiTQLSHPPSCL------LLTTAIAIKLGLVPFHFWF 81
Cdd:PRK08376 168 WEAIEAGIKYMFVGSLASSMVLLGiallygqyGTLNMAYLA----VKMSENPTVVakialaLFIAGLAMKSGAVPVHMWL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   82 PEVL-QGTSFITALLL-STVMKLPPITILLITSHSLNSTLLTSMSIMSI------ALGGWMGLNQTQTRKIMAFSSISHI 153
Cdd:PRK08376 244 PDAYpAAPSSISAMLLvIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAVVQKDVKRLLAYHSVSQI 323

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  154 GWM------TIIIIYNPKLTLL--------TFYI--YTLMTVSIFLT----MDTTNTMNLPTLMTSWTKTPMLSTTLMLT 213
Cdd:PRK08376 324 GYMllglgvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNELGGLARTMPKTTIAFLIG 403

                        250
                 ....*....|....*....
gi 75677978  214 LLSLAGLPPLTGFLPKWLI 232
Cdd:PRK08376 404 AAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
16-229 5.09e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.98  E-value: 5.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   16 PRAIEATTKYFLVQAAASALLLF---------SGTTNAWYTGQWDITQLShPPSCLLLT---TAIAIKLGLVPFHFWFPE 83
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIALALITSPS-LGLALALVfviAGIAFKISAVPFHQWTPD 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   84 VLQGTSFITALLLSTVMKLPPITI---LLITSHSLNST----LLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWM 156
Cdd:PRK02504 236 VYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFV 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  157 TIIIIYNPK--LTLLTFY--IYTLMTVSIF----LTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLP 228
Cdd:PRK02504 316 MIGLVAGTEagYASMVFYllAYLFMNLGAFacviLFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395


                 .
gi 75677978  229 K 229
Cdd:PRK02504 396 K 396
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 4-160 1.70e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.13  E-value: 1.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    4 LSIIP---LISKSHHPRAIEATTKYFLVQAAASALLLFS----GTTNAWYTGQWDITQLSHPPSCLLLTT--------AI 68
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   69 AIKLGLVPFHFWFPEVLQGTSFITALLLSTVM-----------KLPpitILLITSHSLnSTLLTSMSIMSIALGGWMGLN 137
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEF-APIIITLGVIAIIYGALVALA 297

                        170       180
                 ....*....|....*....|...
gi 75677978  138 QTQTRKIMAFSSISHIGWMTIII 160
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVTLGI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 16-160 1.86e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.86  E-value: 1.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    16 PRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQW----DITQLSHPPSC-----LLLTTAIAIKLGLVPFHFWFPEV-L 85
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    86 QGTSFITALLLSTVMKLPPITILLIT------SHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTII 159
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfpdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311


                  .
gi 75677978   160 I 160
Cdd:TIGR01972 312 I 312
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 19-176 2.92e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 51.29  E-value: 2.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   19 IEATTKYFLVQAAA------SALLLFSGTTNAWYTGQWDITQL-SHPP---------SCLLLTTAIAIKLGLVPFHFWFP 82
Cdd:PRK08676 151 IDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELaAHASllspsvlgaSFLFIFIGFLAKSGLVPFHTWLP 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   83 EV-LQGTSFITALLLSTVMKLPPITILLITS-------HSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIG 154
Cdd:PRK08676 231 AAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMG 310

                        170       180
                 ....*....|....*....|..
gi 75677978  155 WMTIIIIYNPKLTLLTFYIYTL 176
Cdd:PRK08676 311 LMLLGIGIGTPLALFWMLFHML 332
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 6-248 1.94e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.84  E-value: 1.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    6 IIPLISKshhpRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQ----LSHPPS-------CLLLTTAIAIKLGL 74
Cdd:PRK08668 137 MVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfalivFLFLLAFGVAKAGI 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   75 VPFHFWFPEVLQGT--SFITAL----------LLSTVMKLPPITILLIT-----SHSLNSTLLTSMSIMSIALGGWMGLN 137
Cdd:PRK08668 213 FPLHVWAPDAYSEApqSFSAVLsgqlsklgayGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAIL 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  138 QTQTRKIMAFSSISHIGWMTIIIIYNPKLTLL--TFYIYT--LMTVSIFLTMDT----TNTMNLPTLMTSWTKTPMLSTT 209
Cdd:PRK08668 293 QEDIKKLIAYSSVANGGYILVGLGLGTSLGFAggLFHVFNhaLFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAM 372

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 75677978  210 LMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAI 248
Cdd:PRK08668 373 YLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK12650 PRK12650
DUF4040 family protein;
64-229 3.87e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.12  E-value: 3.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   64 LTTAIAI--------KLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNST-----LLTSMSIMSIAL 130
Cdd:PRK12650 206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  131 GGWMGLNQTQTRKIMAFSSISHIGWMTIIIIYNPKLTLLTFYIYT----LMTVSIFLTMDT----TNTMNLPTLMTSWTK 202
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVvdhqAGTRDIRRLGSLWRR 365

                        170       180
                 ....*....|....*....|....*..
gi 75677978  203 TPMLSTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 47-229 1.27e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.46  E-value: 1.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   47 TGQWDITQL-SHPPSCLLLTTAIAI-------KLGLVPFHFWFPEVLQGTSFITALLLSTVM----------------KL 102
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvarlapgfaDV 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  103 PPITILLITSHSLnsTLLtsmsimsiaLGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIYNPK------LTLLT----FY 172
Cdd:PRK12644 264 PVWRPTVLVLGLA--TML---------LGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLLahalFK 332

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677978  173 IYTLMTVSIfltMD-TTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK12644 333 AALFLVVGI---IDhSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-229 4.96e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.82  E-value: 4.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   14 HHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSC--------LLLTTAIAIKLGLV------PFHF 79
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   80 WFPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNST-----LLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIG 154
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  155 WMTIIIIYN----PKLTL--LTFYIY-------TLMTVSIFLTMDTTnTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLP 221
Cdd:PRK12649 316 YLMTMYGYTtyhePGLGVaaATFHLLnhatfkaCLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 75677978  222 PLTGFLPK 229
Cdd:PRK12649 395 PLNGFLSK 402
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 21-160 8.53e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 8.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   21 ATTKYFLVQAAASALLLFSGTTNAWYTGQ--WDITQLS--HPPSCLLLT------TAIAIKLGLVPFHFWFPEVLQGTSF 90
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLlyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75677978   91 ITALLLSTVM-KLPPITI------LLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
19-234 2.75e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.24  E-value: 2.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   19 IEATTKYFLVQAAASALLLFS--------GTTNAWYTGQwDITQLSHPPS----CLLLTTAIAIKLGLVPFhFWFPEVLQ 86
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGigllygtfGTLNMAHIAM-RLNDMGDTATlttiALLFLLAFGMKAALFPF-MWLPAAYH 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   87 GTSFITALLLSTVMKLPPI-------TILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI- 158
Cdd:PRK12663 235 TPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLg 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  159 IIIYNPK-LTLLTFYIYTLMTVSIFL------TMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWL 231
Cdd:PRK12663 315 LALGTPAgINGAIFYLVHDMVVKTALfliagsLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVL 394


                 ...
gi 75677978  232 IIQ 234
Cdd:PRK12663 395 LVQ 397
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 75-232 3.84e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.83  E-value: 3.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   75 VPFHFWFPEVLQGTSFITALLLSTVMKLPPITILLITSHSLNST-----LLTSMSIMSIALGGWMGLNQTQTRKIMAFSS 149
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  150 ISHIGWMTIIIIYNPKLTLLTFYIY----TLMTVSIFLTMDT----TNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLP 221
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSMAGLP 371

                        170
                 ....*....|.
gi 75677978  222 PLTGFLPKWLI 232
Cdd:PRK12647 372 PLFGFLAKELI 382
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-238 4.75e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.64  E-value: 4.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   62 LLLTTAIAIKLGLVPFHFWFPEVL-QGTSFITALLLSTVMKLPPITIL----------LITSHSLNSTLLTSMSIMSIAL 130
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYsEAPSFISVFFSGTSTKVMIYLIIrivydvfkanFVFTTLPFNNVFMILAALAIVF 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  131 GGWMGLNQTQTRKIMAFSSISHIGWMTIIIIYNPKLTLLTFYIY----TLMTVSIFLTMDTT----NTMNLPTLMTSWTK 202
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfGTTKLEDCLNLWKS 372

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 75677978  203 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 238
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 62-238 5.81e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 5.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   62 LLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTV-MKLPPITILLITSHSLNSTL-----LTSMSIMSIALGGWMG 135
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  136 LNQTQTRKIMAFSSISHIG--------WMTIIIIYNPKLTLLTFY--IYTLMTVSIFLTM---------DTTNTMNLPTL 196
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 75677978  197 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 238
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-237 8.33e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.91  E-value: 8.33e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  14 HHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSHPPSCLL---LTTAIAI--------KLGLVPFHFWFP 82
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  83 EVLQGTSFITALLLSTVMklppITI---LLITSHSLNSTLLTSMSIMSIA------LGGWMGLNQTQTRKIMAFSSISHI 153
Cdd:COG1009 236 DAMEGPTPVSALLHAATM----VKAgvyLLARLSPLFALSPVWLTVVAIIgaitalFAALIALAQTDIKRVLAYSTVSQL 311

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978 154 GWMTIIIiynpKLTLLTFYIYTLMTVSIF------------LTMDTTNTMNLPTLmtsWTKTPMLSTTLMLTLLSLAGLP 221
Cdd:COG1009 312 GYMFLAL----GVGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIP 384

                       250
                ....*....|....*.
gi 75677978 222 PLTGFLPKWLIIQELI 237
Cdd:COG1009 385 PFAGFFSKEAILEAAL 400
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 3-158 1.14e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 40.30  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978    3 TLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFsGTTNAWYTGQwdiTQLSHPPSCLLLTTAIAI------------ 70
Cdd:PRK06458 141 TLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALF-GTILVYANAA---TVMGDGEMAILWTELLKHaslldptlmkla 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   71 ----------KLGLVPFHFWFPEV-LQGTSFITALL---LSTVMKLPPITILLITSHSLNS----TLLTSMSIMSIALGG 132
Cdd:PRK06458 217 fvflligfgtKVGLFPMHAWLPDAhSEAPSPVSALLsgvLLNVALYAVLRYYILIDAAIGSdfpgRLLLIFGLLSVLVAA 296

                        170       180
                 ....*....|....*....|....*.
gi 75677978  133 WMGLNQTQTRKIMAFSSISHIGWMTI 158
Cdd:PRK06458 297 FFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 21-160 1.89e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 39.69  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   21 ATTKYFLVQAAASALLLFSGTTNAWYTG--QWDITQLSH---PPSCLLLT-----TAIAIKLGLVPFHFWFPEVL-QGTS 89
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAkdfGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHgEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75677978   90 FITALLLSTVMKLPPITIL------LITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:PRK02546 246 PVHMLLAGILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 34-169 2.20e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 39.55  E-value: 2.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   34 ALLLFSGTTNAWYTGQWDITQLSHPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPPItILLITSH 113
Cdd:MTH00211 180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGV-FLLIRLS 258

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677978  114 SLNSTLLTSMSIMSIA------LGGWMGLNQTQTRKIMAFSSISHIGWMTIII-IYNPKLTLL 169
Cdd:MTH00211 259 PLFQNNQLILGAVLLLgaltmlFGALCALTQNDIKKIVAFSTTSQLGLMMVTLgLNQPQLAFL 321
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-156 5.62e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.03  E-value: 5.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   62 LLLTTAIAIKLGLVPFHFWFPEvlqgtSFITALLLST-----------VMKLPPITILLITSHSLNsTLLTSMSIMSIAL 130
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVV 286

                         90       100
                 ....*....|....*....|....*.
gi 75677978  131 GGWMGLNQTQTRKIMAFSSISHIGWM 156
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYM 312
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 71-234 8.07e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 37.63  E-value: 8.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   71 KLGLvpfHFWFPEVLQGTSFITALLLSTVMKLPPITIL-----LITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIM 145
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978  146 AFSSISHIGWMTIIIIYNPKLTLLTFYI--YTLMTVSIFL---------TMDTTNTMNLPTLMTSwtkTPMLSTTLMLTL 214
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|
gi 75677978  215 LSLAGLPPLTGFLPKWLIIQ 234
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLILE 414
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
26-169 9.18e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.38  E-value: 9.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677978   26 FLVQAAASALLLFSGTTNAWYTGQwdITQ-LSHPPSCLLLTTAI---AIKLGLVPFHFWFPEVLQGTSFITALLLSTVM- 100
Cdd:PRK07363 171 LLVLAAFLGIVWLSGSTSFDYDAI--STQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLa 248

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75677978  101 KLPPITI------LLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIIIYNPKLTLL 169
Cdd:PRK07363 249 KLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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