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Conserved domains on  [gi|75677972|gb|ABA19403|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Enicognathus leptorhynchus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.23e-129

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 372.23  E-value: 1.23e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLPPNPSNKMKQWSIKNPTNILIPTLTSLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.23e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 372.23  E-value: 1.23e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLPPNPSNKMKQWSIKNPTNILIPTLTSLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 1.11e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.47  E-value: 1.11e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972     1 INTLAIIPLI-SKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSC-----------LLLTTAI 68
Cdd:pfam00361  13 AVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssgllllfLLILVGF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    69 AIKLGLAPFHFWFPEVLQGSSFT-TALLLSTVMKLPPTTILLITP--HSLNPT---LLTSLSIVSIALGGWMGLNQTQTR 142
Cdd:pfam00361  93 LFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   143 KIMAFSSISHIGWMTIII----THNPELTLLAFYTYVLMTTSIFL-----SMNTTNTLNLPALMTSWTKTPMLSTTLMLT 213
Cdd:pfam00361 173 RLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVA 252

                         250       260
                  ....*....|....*....|.
gi 75677972   214 LLSLAGLPPLTGFLPKWLIIQ 234
Cdd:pfam00361 253 MLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-236 2.66e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.34  E-value: 2.66e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  14 HHPRAIEATTKYFLVQAAGSTLLLF--------SGMTN----AWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWF 81
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWT 226

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  82 PEVLQGSSFTTALLLSTVMKL----PPTTILLITPHSLNP---TLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIG 154
Cdd:COG1007 227 PDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972 155 WMTI-IITHNPE-LTLLAFY--TYVLMTTSIF-----LSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTG 225
Cdd:COG1007 307 YLLLgLAAGTPLgVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAG 386

                       250
                ....*....|.
gi 75677972 226 FLPKWLIIQEL 236
Cdd:COG1007 387 FFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-243 2.29e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.84  E-value: 2.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    17 RAIEATTKYFLVQAAGSTLLLF--------------SGMTNAWHTGQWDITQLSYppSCLLLTTAIAIKLGLAPFHFWFP 82
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    83 EVLQGSSFTTALLLSTVMKLPPTTILL-------ITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGW 155
Cdd:TIGR01770 228 DVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   156 -MTIIITHNPELTLLAFY---TYVLMTTSIFLSMNTTNTLNLP-----ALMTSWTKT-PMLSTTLMLTLLSLAGLPPLTG 225
Cdd:TIGR01770 308 iLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAG 387

                         250
                  ....*....|....*...
gi 75677972   226 FLPKWLIIQELTKQPLVT 243
Cdd:TIGR01770 388 FFGKFYVFFALLKSGLYW 405
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.23e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 372.23  E-value: 1.23e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLPPNPSNKMKQWSIKNPTNILIPTLTSLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-298 3.98e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 312.63  E-value: 3.98e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00070  35 INTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00070 115 LPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00070 195 TFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLPPNPSNKMKQWSIKNPTNILIPTLTSLS 298
Cdd:MTH00070 275 LTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILS 332
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-296 1.93e-104

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 308.27  E-value: 1.93e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00135  35 INTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTtILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00135 115 LPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00135 194 QFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQD 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLPPNPSNKMKQWSIKNPTNILIPTLTS 296
Cdd:MTH00135 274 LPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAIST 329
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-298 4.48e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 274.42  E-value: 4.48e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00105  35 MNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00105 115 VPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00105 195 PYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLPPNPSNKMKQWSIKNP-TNILIPTLTSLS 298
Cdd:MTH00105 275 NIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTkPMTLLPTLIILS 333
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-298 1.72e-81

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 249.89  E-value: 1.72e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00200  35 INTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00200 115 VPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00200 195 VYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQG 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLPPNPSNKMKQWSIKNPTNILIPTLTSLS 298
Cdd:MTH00200 275 LFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLS 332
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-233 2.70e-67

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 213.64  E-value: 2.70e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00041  35 LNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00041 115 FPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITS 194

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLII 233
Cdd:MTH00041 195 AYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-298 1.76e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 153.83  E-value: 1.76e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWhtgqwdITQLSYPPSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00160  36 INLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLINSSLLLKLGAAPFHFW 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLitpHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00160 110 FPEVMEGLSWINCFILMTWQKIAPLILLS---YLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSM 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQP 240
Cdd:MTH00160 187 MISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNN 266

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677972  241 LVTTPTIISLLSLLGLFFYLPLAYCSTITLppNPSNKMKQWSIKNPTNILIPTLTSLS 298
Cdd:MTH00160 267 MFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNKFSLILNFLSFIS 322
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-242 6.29e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 144.64  E-value: 6.29e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITqlsyppscLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00144  35 INLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFPFHFW 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPT-TILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTII 159
Cdd:MTH00144 107 VPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVA 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  160 ITHNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLpALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQ 239
Cdd:MTH00144 187 ILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMES 265


                 ...
gi 75677972  240 PLV 242
Cdd:MTH00144 266 SPL 268
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-237 2.14e-38

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 137.99  E-value: 2.14e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFsGMTNAWHTgqwdITQLSYPPScLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00011  37 LNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLL-GMTMMWSF----PSLLKNITA-LMLLVSLMLKLGMAPCHFW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00011 111 FPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMIS 190

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELT 237
Cdd:MTH00011 191 VFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLT 267
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-236 1.35e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 125.17  E-value: 1.35e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNawhtgQWDITQLSYppSCLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00197  29 LNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS-----FSNLYLSLL--SVVLVILGLLLKLGAFPFHFW 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLSTVMKLPPttILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:MTH00197 102 VPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSL 179

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 75677972  161 THNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQEL 236
Cdd:MTH00197 180 VYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 1.11e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.47  E-value: 1.11e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972     1 INTLAIIPLI-SKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSC-----------LLLTTAI 68
Cdd:pfam00361  13 AVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssgllllfLLILVGF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    69 AIKLGLAPFHFWFPEVLQGSSFT-TALLLSTVMKLPPTTILLITP--HSLNPT---LLTSLSIVSIALGGWMGLNQTQTR 142
Cdd:pfam00361  93 LFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   143 KIMAFSSISHIGWMTIII----THNPELTLLAFYTYVLMTTSIFL-----SMNTTNTLNLPALMTSWTKTPMLSTTLMLT 213
Cdd:pfam00361 173 RLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVA 252

                         250       260
                  ....*....|....*....|.
gi 75677972   214 LLSLAGLPPLTGFLPKWLIIQ 234
Cdd:pfam00361 253 MLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-236 2.66e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.34  E-value: 2.66e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  14 HHPRAIEATTKYFLVQAAGSTLLLF--------SGMTN----AWHTGQWDITQLSYPPSCLLLTTAIAIKLGLAPFHFWF 81
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWT 226

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  82 PEVLQGSSFTTALLLSTVMKL----PPTTILLITPHSLNP---TLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIG 154
Cdd:COG1007 227 PDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972 155 WMTI-IITHNPE-LTLLAFY--TYVLMTTSIF-----LSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTG 225
Cdd:COG1007 307 YLLLgLAAGTPLgVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAG 386

                       250
                ....*....|.
gi 75677972 226 FLPKWLIIQEL 236
Cdd:COG1007 387 FFGKFYVFSAA 397
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-233 2.93e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 95.10  E-value: 2.93e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLI-SKSHHPRAIEATTKYFLVQAAGSTLLLFS-----GMTNAWH--------TGQWDITQLSYPPSCLLLTT 66
Cdd:MTH00196  24 LQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcGTTGGLHlsyinlvlNSGQSFSSVSVPIGYLLIIV 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   67 AIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILL-ITPHSLNPTLLTSLSIVSIALGgwmGLNQTQTRKIM 145
Cdd:MTH00196 104 ALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVsIGLNVNILLIGGLFSLFVGAIG---ALNQTKIKRLL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  146 AFSSISHIGWMTIIITHNP----ELTLLAFYTYVLMTTSIF---LSMNTTNTLnLPALMTSWTKTPMLSTTLMLTLLSLA 218
Cdd:MTH00196 181 AYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFSGLSRRLPILAITLALTFLSIA 259

                        250
                 ....*....|....*
gi 75677972  219 GLPPLTGFLPKWLII 233
Cdd:MTH00196 260 GIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
17-234 2.17e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 84.87  E-value: 2.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   17 RAIEATTKYFLVQAAGSTLLL--------------FSGMTNAWHTGQWDITQLSYppSCLLLTTAIAIKLGLAPFHFWFP 82
Cdd:PRK05777 151 RSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKALADGSGNSLLLLF--GLVFLLVGLAFKLSAVPFHMWTP 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   83 EVLQGSSFTTALLLSTVMKL----PPTTILLITPHSLNPT---LLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGW 155
Cdd:PRK05777 229 DVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGY 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  156 MTI-IITHNPE-LTLLAFY--TYVLMTTSIF-----LSMNTTNTLNLPAL-MTSWTKtPMLSTTLMLTLLSLAGLPPLTG 225
Cdd:PRK05777 309 LLVgLAAGTAEgYSAVLFYllAYLFMTLGAFgvislLRRKGGEAESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAG 387


                 ....*....
gi 75677972  226 FLPKWLIIQ 234
Cdd:PRK05777 388 FWGKFYVFE 396
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 17-233 2.65e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 84.68  E-value: 2.65e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   17 RAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSC----LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTT 92
Cdd:MTH00199 145 YSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTIT 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   93 ALLLSTVMKLPPTTILLITPHSLNPTLLTSlsIVSIALGGWMGLNQTQTRKIMAFSSISHIGW----MTIIITHNPELTL 168
Cdd:MTH00199 225 TALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASL 302

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 75677972  169 LAFYTYVLMTT---SIFLSMNTTNTLnLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLII 233
Cdd:MTH00199 303 IYMIIYVIMSIcsfSIILSLKLTKGL-IVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-234 4.70e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 83.66  E-value: 4.70e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   1 INTLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLS-----YPPS-----CLLLTTAIAI 70
Cdd:COG0651 138 VMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarlaeLDPGlllaaFALLLVGFGI 217

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  71 KLGLAPFHFWFPEVL-QGSSFTTALLLSTVMKLPP----TTILLITPHSLNP---TLLTSLSIVSIALGGWMGLNQTQTR 142
Cdd:COG0651 218 KAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailRVLTLLFGADPALflgTLLLVLGLLTMLVGALGALAQRDLK 297

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972 143 KIMAFSSISHIGWMTIIITHNPELTLLAFYTYV----LMTTSIFLS----MNTTNTLNLPALMTSWTKTPMLSTTLMLTL 214
Cdd:COG0651 298 RLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGA 377

                       250       260
                ....*....|....*....|
gi 75677972 215 LSLAGLPPLTGFLPKWLIIQ 234
Cdd:COG0651 378 LALAGLPPLSGFVSKWLLLQ 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-243 2.29e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.84  E-value: 2.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    17 RAIEATTKYFLVQAAGSTLLLF--------------SGMTNAWHTGQWDITQLSYppSCLLLTTAIAIKLGLAPFHFWFP 82
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    83 EVLQGSSFTTALLLSTVMKLPPTTILL-------ITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGW 155
Cdd:TIGR01770 228 DVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   156 -MTIIITHNPELTLLAFY---TYVLMTTSIFLSMNTTNTLNLP-----ALMTSWTKT-PMLSTTLMLTLLSLAGLPPLTG 225
Cdd:TIGR01770 308 iLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAG 387

                         250
                  ....*....|....*...
gi 75677972   226 FLPKWLIIQELTKQPLVT 243
Cdd:TIGR01770 388 FFGKFYVFFALLKSGLYW 405
ndhB CHL00049
NADH dehydrogenase subunit 2
 17-229 2.64e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 75.81  E-value: 2.64e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   17 RAIEATTKYFLVQAAGSTLLL--FSGM--TNAWHTGQWDI------TQLSYPPSCLL----LTTAIAIKLGLAPFHFWFP 82
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   83 EVLQGSSFTTALLLSTVMKLP----PTTIL-LITPHSLNP--TLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGW 155
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFdIPFYFSSNEwhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  156 MTI-IITHNPELTLLAFYTYVLmttsIFLSMN------------TTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPP 222
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYML----FYIFMNlgtfacivlfglRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPP 394


                 ....*..
gi 75677972  223 LTGFLPK 229
Cdd:CHL00049 395 LAGFFGK 401
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 62-233 2.06e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 73.35  E-value: 2.06e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   62 LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLppTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQT 141
Cdd:MTH00198 303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRI 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  142 RKIMAFSSISHIGWMTIIITHNPELTLLAFYTY-VLMTTSIFLSMNTTNTLN------------------------LPAL 196
Cdd:MTH00198 381 KRLLAYSGIGHIGFILIGVSAGTYESLQASWTYaVTYLVSALASFTVICTLEefgtrtptsrqrdgsfgnynlvrrLVDL 460

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 75677972  197 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLII 233
Cdd:MTH00198 461 TILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 4-158 4.15e-14

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 72.04  E-value: 4.15e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   4 LAIIP---LISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQW-----DITQLSYPPS-----CLLLTTAIAI 70
Cdd:COG1008 142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  71 KLGLAPFHFWFPEVLQGSSFTTALLLSTVMK-----------LPpttILLITPHSLNPTLLTsLSIVSIALGGWMGLNQT 139
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                       170
                ....*....|....*....
gi 75677972 140 QTRKIMAFSSISHIGWMTI 158
Cdd:COG1008 298 DLKRLIAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-236 2.44e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.66  E-value: 2.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    8 PLISKSHHPRAIEATTKYFLVQAAGSTLLLFS-GMTNAwHTGQWDITQLS--YPPSCLLLT------TAIAIKLGLAPFH 78
Cdd:PRK08375 144 ALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAgaLAENPTVVTafgfvlLALALKAAVFPLH 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   79 FWFPEVLQG-SSFTTALLLSTVMKLPPTTILLITPHSLNP---------TLLTSLSIVSIALGGWMGLNQTQTRKIMAFS 148
Cdd:PRK08375 223 TWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDDVKRVLAYS 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  149 SISHIGWMTIIITHNPELTLLA--FYT--YVLMTTSIFLS----MNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGL 220
Cdd:PRK08375 303 TVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGV 382

                        250
                 ....*....|....*.
gi 75677972  221 PPLTGFLPKWLIIQEL 236
Cdd:PRK08375 383 PPTSGFVSKWYLVVGA 398
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-232 2.36e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.80  E-value: 2.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLIS-KSHHPRAIEATTKYFLVQAAGSTLLLFSgmtNAWHTGQWDITQLSY-------PPSCL------LLTT 66
Cdd:PRK08376 152 IMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLG---IALLYGQYGTLNMAYlavkmseNPTVVakialaLFIA 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   67 AIAIKLGLAPFHFWFPEVLQG--SSFTTALLLSTVMKLPPTTILLITPHSLNPTLLTS------LSIVSIALGGWMGLNQ 138
Cdd:PRK08376 229 GLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQ 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  139 TQTRKIMAFSSISHIGWM------TIIITHNPELTLLAF----------YTYVLMTTSIFLS----MNTTNTLNLPALMT 198
Cdd:PRK08376 309 KDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGEialaggiyhiVNHALYKALLFLTagavIYETGTRNLNELGG 388

                        250       260       270
                 ....*....|....*....|....*....|....
gi 75677972  199 SWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 232
Cdd:PRK08376 389 LARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 16-160 7.78e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.10  E-value: 7.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    16 PRAIEATTKYFLVQAAGSTLLLFS----GMTNAWHTGQWDITQLSYPPSC-----LLLTTAIAIKLGLAPFHFWFPEV-L 85
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    86 QGSSFTTALLLSTVMKLPPTTILLIT----PHSLN--PTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTII 159
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfPDASLyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311


                  .
gi 75677972   160 I 160
Cdd:TIGR01972 312 I 312
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 4-248 1.15e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.77  E-value: 1.15e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    4 LAIIPLISKshhpRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQ----LSYPPS-------CLLLTTAIAIKL 72
Cdd:PRK08668 135 FMMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfalivFLFLLAFGVAKA 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   73 GLAPFHFWFPEV--LQGSSFTTAL----------LLSTVMKLPPTTILLIT-----PHSLNPTLLTSLSIVSIALGGWMG 135
Cdd:PRK08668 211 GIFPLHVWAPDAysEAPQSFSAVLsgqlsklgayGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMA 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  136 LNQTQTRKIMAFSSISHIGWMTIIIThnpELTLLAF-------YTYVLMTTSIFLSMNT----TNTLNLPALMTSWTKTP 204
Cdd:PRK08668 291 ILQEDIKKLIAYSSVANGGYILVGLG---LGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMP 367

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 75677972  205 MLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQPLVTTPTII 248
Cdd:PRK08668 368 FTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
16-229 6.77e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.52  E-value: 6.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   16 PRAIEATTKYFLVQAA-------GSTLL--LFSGMTNAWHTGQWDITQLSYPP--SCLLLTTAIAIKLGLAPFHFWFPEV 84
Cdd:PRK02504 157 PRSNEAALKYLLIGAAssaiflyGSSLLygLSGGSTQLSAIALALITSPSLGLalALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   85 LQGSSFTTALLLSTVMKLPPTTI---LLITPHSLNPT----LLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMT 157
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  158 IIITHNPELTLLAFYTYVLmttsIFLSMN------------TTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTG 225
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMNlgafacvilfslRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 75677972  226 FLPK 229
Cdd:PRK02504 393 FFGK 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-236 8.64e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 53.23  E-value: 8.64e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  14 HHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLS-----------YPPSCLLLTTAIAIKLGLAPFHFWFP 82
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLaaaptilssplLTLILLLLLLGAFGKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  83 EVLQGSSFTTALLLSTVM---------KLPPttILLITPHSLnpTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHI 153
Cdd:COG1009 236 DAMEGPTPVSALLHAATMvkagvyllaRLSP--LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQL 311

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972 154 GWMTI-------------IITHnpeltllAFY--TYVLMTTSIFLSMNTTNTLNLPALmtsWTKTPMLSTTLMLTLLSLA 218
Cdd:COG1009 312 GYMFLalgvgayvaalfhLLTH-------AFFkaLLFLGAGSVIHATGTRDIRKMGGL---RKKMPITAITFLIGALSLA 381

                       250
                ....*....|....*...
gi 75677972 219 GLPPLTGFLPKWLIIQEL 236
Cdd:COG1009 382 GIPPFAGFFSKEAILEAA 399
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 4-160 7.12e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.20  E-value: 7.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    4 LAIIP---LISKSHHPRAIEATTKYFLVQAAGSTLLLFS----GMTNAWHTGQWDITQL---SYPPS-------CLLLtt 66
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlPLPPGvqywlflAFFI-- 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   67 AIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVM-----------KLPpttILLITPHSLNPTLLTsLSIVSIALGGWMG 135
Cdd:PRK05846 220 AFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEFAPIIIT-LGVIAIIYGALVA 295

                        170       180
                 ....*....|....*....|....*
gi 75677972  136 LNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:PRK05846 296 LAQTDIKKLIAYSSISHMGFVTLGI 320
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 46-229 9.58e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.92  E-value: 9.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   46 HTGQWDITQL-SYPPSCLLLTTAIAI-------KLGLAPFHFWFPEVLQGSSFTTALLLSTVM-KLPPTTILLITP---- 112
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvKAGIYLVARLAPgfad 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  113 -HSLNPTLLTsLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII---THNPELTLLAFYT-YVLMTTSIFLSM-- 185
Cdd:PRK12644 263 vPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgigTRDAALAGLAMLLaHALFKAALFLVVgi 341

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 75677972  186 --NTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK12644 342 idHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 21-160 1.29e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 49.26  E-value: 1.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   21 ATTKYFLVQAAGSTLLLFSGMTNAWHTGQ--WDITQL---SYPPSCLLLT-----TAIAIKLGLAPFHFWFPEVLQGSSF 90
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   91 TTALLLSTV-------------MKLPPTTILLITPhslnptLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMT 157
Cdd:PRK12561 218 PVSMILAGVllkmggyalirfnVQMLPDAHVYFAP------ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                 ...
gi 75677972  158 III 160
Cdd:PRK12561 292 LGI 294
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 25-247 8.13e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.03  E-value: 8.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   25 YFLVQAAGSTLLLFSGMTNAW-HTGQWDITQLSYPP-----SCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLST 98
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   99 VM------KLPPTTILLITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIG--------WMTIIITHNP 164
Cdd:PRK08667 246 VMlkvavyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLD 325

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  165 ELTLLAF-------YTYVLMTTSIFLS----MNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLII 233
Cdd:PRK08667 326 TLALLALggalfhsLNHALFKSLLFLTagsvVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLY 405

                        250
                 ....*....|....
gi 75677972  234 QELTKQPLVTTPTI 247
Cdd:PRK08667 406 ESFFQSFSVADPLI 419
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-229 8.17e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 47.13  E-value: 8.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   14 HHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLSYPPSC--------LLLTTAIAIKLGLA------PFHF 79
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   80 WFPEVLQGSSFTTALLLSTVM---------KLPPttILLITPHSLnpTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSI 150
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMvkagvylvaRIHP--IFSGTEAWF--ILVSGTGMITMVLAGFLAFRQTDIKAILAYSTI 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  151 SHIGWMTII----ITHNPELTLLAfYTYVLMTTSIF---------LSMNTTNTLNLPALMTSWTKTPMLSTTLMLTLLSL 217
Cdd:PRK12649 312 SQLAYLMTMygytTYHEPGLGVAA-ATFHLLNHATFkaclflvagIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAM 390

                        250
                 ....*....|..
gi 75677972  218 AGLPPLTGFLPK 229
Cdd:PRK12649 391 AGIPPLNGFLSK 402
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 19-160 1.69e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.90  E-value: 1.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   19 IEATTKYFLVqAAGSTL-------LLFSGMTNAWHTGQWDITQLS-----YPPSCLLLT-----TAIAIKLGLAPFHFWF 81
Cdd:PRK08676 151 IDAALKYIFI-ASTAMIfafigliFLFSLTRQALGTGTLNWTELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWL 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   82 PEV-LQGSSFTTALLLSTVMKLPPTTILLITP-------HSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHI 153
Cdd:PRK08676 230 PAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHM 309


                 ....*..
gi 75677972  154 GWMTIII 160
Cdd:PRK08676 310 GLMLLGI 316
PRK12650 PRK12650
DUF4040 family protein;
64-229 8.06e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.26  E-value: 8.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   64 LTTAIAIKLGLA--------PFHFWFPEVLQG----SSFTTA---------LLL--STVMKLPPT-TILLITPhslnpTL 119
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAitpvSAFLHAaavvkagiyLLLrfSPVFHDVAVwNWLLIIV-----GM 280

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  120 LTSLsivsiaLGGWMGLNQTQTRKIMAFSSISHIGWM--TIIITHNPELTLLAFYT--YVLMTTSIFLSM----NTTNTL 191
Cdd:PRK12650 281 ITAL------MGAVFAVQKTDLKKLTAYSTVSQLGWIvaTIGVGTPFALTAAVVHTlaHALFKSSLFMLIgvvdHQAGTR 354

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 75677972  192 NLPALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 229
Cdd:PRK12650 355 DIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-233 1.29e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.18  E-value: 1.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   62 LLLTTAIAIKLGLAPFHFWFPEVLQGS-SFTTALLLSTVMKLPPTTI-----------LLITPHSLNpTLLTSLSIVSIA 129
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  130 LGGWMGLNQTQTRKIMAFSSISHIGWMTIIITHNPELTLLAFYTYV----LMTTSIFLSMNTT----NTLNLPALMTSWT 201
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|..
gi 75677972  202 KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLII 233
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 62-238 1.36e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 43.28  E-value: 1.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   62 LLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTV-MKLPPTTILLITPHSLNPTL-----LTSLSIVSIALGGWMG 135
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  136 LNQTQTRKIMAFSSISHIG--------WMTIIITHNPELTLLAF-------YTYVLMTTSIFLSMNT----TNTLNLPAL 196
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLvgglyhlLNHSLFKSVLFLGAGSvwfrTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 75677972  197 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTK 238
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 57-248 2.09e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.60  E-value: 2.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   57 YPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSSFTTALLLSTVM-KLpptTILLITphSLNPTL------LTSLSIV--- 126
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMvKA---GIYLLA--RLNPVLggtplwQTILPLFggl 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  127 SIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIITHNPELTLLAFYTYvLMTTSIF---LSM------NTTNTLNLPALM 197
Cdd:PRK12647 269 TMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLF-LVAHSLYkgaLFMvagiidHETGTRDITKLG 347

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 75677972  198 TSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQPLVTTPTII 248
Cdd:PRK12647 348 GLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTV 398
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-234 3.13e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.88  E-value: 3.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   62 LLLTTAIAIKLGLAPFHFWFPEvlqgsSFTTALLLST-----------VMKLPPTTILLITPHSLNpTLLTSLSIVSIAL 130
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  131 GGWMGLNQTQTRKIMAFSSISHIGWMTIIITHNPELTLLAFYTYV----LMTTSIFLSM----NTTNTLNLPALMTSWTK 202
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVglieRQAGSSSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 75677972  203 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 234
Cdd:PRK12665 367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
4-170 4.94e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.22  E-value: 4.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    4 LAIIPL---ISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGqwdITQLSYPP---------SCLLLTTAI--- 68
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSG---ASSFDYEPlrshtlplsTQLLLLAPIlvg 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   69 -AIKLGLAPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNPTL-------LTSLSIVSIALGGWMGLNQTQ 140
Cdd:PRK06473 215 fGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKD 294

                        170       180       190
                 ....*....|....*....|....*....|
gi 75677972  141 TRKIMAFSSISHIGWMTIIITHNPELTLLA 170
Cdd:PRK06473 295 MKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
1-234 5.17e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 5.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    1 INTLAIIPLISKSHHPRAIEATTKYFLV-QAAGSTLLLFSGMTNAwHTGQWDITQLSY-----PPSCLLLTTAIAIKLGL 74
Cdd:PRK06277 131 IAAIVQVGLVIASGTEEAYKAALKYMILgNVAGSILLLGIGFLLA-STGTLNITDIHNallvnPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   75 A------PFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITPHSLNP--------TLLTSLSIVSIALGGWMGLNQTQ 140
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  141 TRKIMAFSSISHIGWMTIIITHNPELTLLA--FYT--YVLMTTSIFLSMNT----TNTLNLPALMTSWTKTPMLSTTLML 212
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAgiFHAinHVIYKSALFLGAGIvsyrTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 75677972  213 TLLSLAGLPPLTGFLPKWLIIQ 234
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 71-237 9.99e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.71  E-value: 9.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   71 KLGLapfHFWFPEVLQGSSFTTALLLSTVMkLPPTTILLITPHSLNPTLLTSLSIVSI--ALGGW----MGLNQTQTRKI 144
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLFEKAPLTLLIITIfgALTAFfaatVGLVQNDLKKV 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  145 MAFSSISHIGWMTIII----THNpeLTLLAFYTYVLMTTSIFLSMN------TTNTLNLPALMTSWTKTPMLSTTLMLTL 214
Cdd:MTH00032 317 IAYSTCSQLGYMVLIIgiegSHN--VGLFHLVNHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|...
gi 75677972  215 LSLAGLPPLTGFLPKWLIIqELT 237
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLIL-ELT 416
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-237 1.60e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.94  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972    3 TLAIIPLISKSHHPRAIEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWDITQLS-YPPSCL-LLTTAIAIKLGLAPFHFW 80
Cdd:PRK07234 127 SIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLAtADPEAFaLIALGLLVKGGIFVSGLW 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   81 FPEVLQGSSFTTALLLS-TVMK---LPPTTILLITPHSLNPtlLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWm 156
Cdd:PRK07234 207 LPLTHSEAEPPVSALLSgVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGF- 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  157 tiiITHNPELTLLAFYTYVLMTTSIFLSMNTTNTLNLpalmTSWTKTPMLS---TTLMLTLLSLAGLPPLTGFLPKWLII 233
Cdd:PRK07234 284 ---ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNF----TELISQMLGIgkwIPLTMASFSIAGFPLLAGFVSKVLTL 356


                 ....
gi 75677972  234 QELT 237
Cdd:PRK07234 357 KNLL 360
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 67-163 1.82e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.52  E-value: 1.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   67 AIAIKLGLAPFHFWFPEV-LQGSSFTTALLLSTVMKLP-------PTTILLITPHSLNPTLLtSLSIVSIALGGWMGLNQ 138
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|....*.
gi 75677972  139 TQTRKIMAFSSISHIGWMTI-IITHN 163
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSItLVTHD 343
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 21-160 2.08e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 39.30  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   21 ATTKYFLVQAAGSTLLLFSGMTNAWHTG--QWDITQLS---YPPSCLLLT-----TAIAIKLGLAPFHFWFPEVLQGSSF 90
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAakdFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75677972   91 TTALLLSTVM-KLPPTTIL------LITPHSLNPTLLTSLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIII 160
Cdd:PRK02546 246 PVHMLLAGILlKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 19-165 6.14e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 38.12  E-value: 6.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   19 IEATTKYFLVQAAGSTLLLFSGMTNAWHTGQWD-----ITQLSYPPSCLLLT---TAIAIKLGLAPFHFWFPEVLQGSSF 90
Cdd:MTH00204 162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVgffLSLAVKIPQIPFHIWLPQAHVEAPV 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   91 TTALLLSTV-MKLP-------PTTILLITPHSLNPTLLTsLSIVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTI-IIT 161
Cdd:MTH00204 242 AGSVILAGIlLKLGgygflrfSWPLFPAASEYFAPLIVM-LSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLgLFT 320


                 ....
gi 75677972  162 HNPE 165
Cdd:MTH00204 321 HTIE 324
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
62-234 8.55e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.38  E-value: 8.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   62 LLLTTAI----AIKLGLAPFHFWFPEVLQGSSFTTALLLSTV-------------MKLPPTTILLITPhslnptLLTSLS 124
Cdd:PRK07363 205 LILLTGLllgfGIKIPLVPLHTWLPDAYTEASPAVAILLGGVlaklgtygllrfgLQLFPQTWSLVAP------GLAIIG 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  125 IVSIALGGWMGLNQTQTRKIMAFSSISHIGWMTIIITHNPELTLLA----FYTYVLMTTSIF-------LSMNTTNTLNL 193
Cdd:PRK07363 279 TISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGavaqMISHGLILALLFhlvgiveRKVGTRDLDVL 358

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 75677972  194 PALMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 234
Cdd:PRK07363 359 NGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
62-234 9.12e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 37.62  E-value: 9.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972   62 LLLTTAIAIKLGLAPFhFWFPEVLQGSSFTTALLLSTVMK-------LPPTTILLITPHSLNPTLLTSLSIVSIALGGWM 134
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677972  135 GLNQTQTRKIMAFSSISHIGWMTIIITHNPELTL-----LAFYTYVLMTTSIFLS---MNTTNTLNLPALMTSWTKTPML 206
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaifYLVHDMVVKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLF 369

                        170       180
                 ....*....|....*....|....*...
gi 75677972  207 STTLMLTLLSLAGLPPLTGFLPKWLIIQ 234
Cdd:PRK12663 370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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