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Conserved domains on  [gi|75677968|gb|ABA19401|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Pionites leucogaster]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.60e-144

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.98  E-value: 1.60e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.60e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.98  E-value: 1.60e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-264 4.45e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.91  E-value: 4.45e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  14 HHPRAIEAATKYFLVQAAASTLVLF--------SGTAN----AWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFWF 81
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWT 226

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  82 PEVLQGSSLVTALLLSTMMKL----PPTTILLITSHSLNP---TLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIG 154
Cdd:COG1007 227 PDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968 155 WMTIIII--HNPGLTLLTFY--IYILMTTSIF-----LSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTG 225
Cdd:COG1007 307 YLLLGLAagTPLGVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAG 386

                       250       260       270
                ....*....|....*....|....*....|....*....
gi 75677968 226 FLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRLAY 264
Cdd:COG1007 387 FFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 16-234 1.05e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 1.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    16 PRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPP-----------ASLLLTTAIAIKLGLAPFHFWFPEV 84
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssglllLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    85 LQGSSL-VTALLLSTMMKLPPttILLITSHSLNPT-------LLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWM 156
Cdd:pfam00361 109 YEGAPTpVSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYM 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   157 TIIIIHNP--GLTLLTFY--IYILMTTSIFL-----SLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFL 227
Cdd:pfam00361 187 LIALGAGTiyGIQAAIFHllTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFL 266


                  ....*..
gi 75677968   228 PKWLIIQ 234
Cdd:pfam00361 267 GKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-263 1.49e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.86  E-value: 1.49e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    17 RAIEAATKYFLVQAAASTLVLF--------------SGTANAWHTGQWDITQLSYppASLLLTTAIAIKLGLAPFHFWFP 82
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    83 EVLQGSSLVTALLLST---------MMKLPPTtILLITSHSLNPTLLIsMSITSIALGGWMGLNQTQTRKILAFSSISHI 153
Cdd:TIGR01770 228 DVYEGAPTPVTAFFSIvpkiaifavFLRLFLY-ILFGFSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHV 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   154 GW--MTIIIIHNPGLTLLTFY--IYILMTTSIFLSLDATNTLNLP-----TLMTSWTK-SPMLNTTLMLALLSLAGLPPL 223
Cdd:TIGR01770 306 GYilIGLLAGTLEGIKAVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKtNPILAILILIFMFSLAGIPPL 385

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 75677968   224 TGFLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRLA 263
Cdd:TIGR01770 386 AGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-298 1.60e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.98  E-value: 1.60e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00112  35 INTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00112 115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00112 195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00112 275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLS 332
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-290 3.74e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 342.94  E-value: 3.74e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00135  35 INTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTtILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00135 115 LPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00135 194 QFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQD 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKTPANIL 290
Cdd:MTH00135 274 LPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-298 9.73e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 339.59  E-value: 9.73e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00070  35 INTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00070 115 LPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00070 195 TFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00070 275 LTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILS 332
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-298 2.32e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 310.62  E-value: 2.32e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00105  35 MNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00105 115 VPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAIL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00105 195 PYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSN-KMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00105 275 NIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENTKPMTLLPTLIILS 333
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-298 1.26e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 260.29  E-value: 1.26e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00200  35 INTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00200 115 VPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00200 195 VYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQG 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00200 275 LFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLS 332
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-298 5.00e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 240.99  E-value: 5.00e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00041  35 LNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00041 115 FPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00041 195 AYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNN 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00041 275 SILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILS 332
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-298 2.24e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 174.63  E-value: 2.24e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWhtgqwdITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00160  36 INLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLINSSLLLKLGAAPFHFW 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILlitSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00160 110 FPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSM 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00160 187 MISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNN 266

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLppNSSNKMKQWSTKTPANILTPTLISLS 298
Cdd:MTH00160 267 MFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNKFSLILNFLSFIS 322
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-268 1.68e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 151.19  E-value: 1.68e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDItqlsyppaSLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00144  35 INLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--------MSLLLLGLCLKLGLFPFHFW 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPT-TILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTII 159
Cdd:MTH00144 107 VPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVA 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  160 IIHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLpTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQ 239
Cdd:MTH00144 187 ILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMES 265

                        250       260
                 ....*....|....*....|....*....
gi 75677968  240 ELTTTATTISMLWLLSLFFYLRLAYCSTI 268
Cdd:MTH00144 266 SPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-285 1.92e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 143.38  E-value: 1.92e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTAnawhtgQWDITQLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00011  37 LNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNITALMLLVSLMLKLGMAPCHFW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00011 111 FPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMIS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00011 191 VFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNS 270

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWSTKT 285
Cdd:MTH00011 271 MILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKT 315
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-279 2.92e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.50  E-value: 2.92e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTgqwditqLSYPPASLLLTTAIAIKLGLAPFHFW 80
Cdd:MTH00197  29 LNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSVVLVILGLLLKLGAFPFHFW 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHslNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:MTH00197 102 VPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  161 IHNPGLTLLTFYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQE 240
Cdd:MTH00197 180 VYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSN 259

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 75677968  241 LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMK 279
Cdd:MTH00197 260 ISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-264 4.45e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.91  E-value: 4.45e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  14 HHPRAIEAATKYFLVQAAASTLVLF--------SGTAN----AWHTGQWDITQLSYPPASLLLTTAIAIKLGLAPFHFWF 81
Cdd:COG1007 147 DDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWT 226

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  82 PEVLQGSSLVTALLLSTMMKL----PPTTILLITSHSLNP---TLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIG 154
Cdd:COG1007 227 PDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAG 306

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968 155 WMTIIII--HNPGLTLLTFY--IYILMTTSIF-----LSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTG 225
Cdd:COG1007 307 YLLLGLAagTPLGVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAG 386

                       250       260       270
                ....*....|....*....|....*....|....*....
gi 75677968 226 FLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRLAY 264
Cdd:COG1007 387 FFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-262 2.65e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 106.27  E-value: 2.65e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDI-------------TQLSYPPASLLLTT 66
Cdd:MTH00196  24 LQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvlnsgqsfSSVSVPIGYLLIIV 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   67 AIAIKLGLAPFHFWFPEVLQGSSLVTALLLSTMMKLPPTTILLitSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILA 146
Cdd:MTH00196 104 ALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  147 FSSISHIGWMTIII----IHNPGLTLLTFYIYILMTTSIFLSLDATNTLN--LPTLMTSWTKSPMLNTTLMLALLSLAGL 220
Cdd:MTH00196 182 YSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGI 261

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 75677968  221 PPLTGFLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRL 262
Cdd:MTH00196 262 PPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 16-234 1.05e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 1.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    16 PRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPP-----------ASLLLTTAIAIKLGLAPFHFWFPEV 84
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssglllLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    85 LQGSSL-VTALLLSTMMKLPPttILLITSHSLNPT-------LLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWM 156
Cdd:pfam00361 109 YEGAPTpVSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYM 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   157 TIIIIHNP--GLTLLTFY--IYILMTTSIFL-----SLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFL 227
Cdd:pfam00361 187 LIALGAGTiyGIQAAIFHllTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFL 266


                  ....*..
gi 75677968   228 PKWLIIQ 234
Cdd:pfam00361 267 GKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
17-262 4.22e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 101.44  E-value: 4.22e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   17 RAIEAATKYFLVQAAASTLVL--------------FSGTANAWHTGQWDITQLSYppASLLLTTAIAIKLGLAPFHFWFP 82
Cdd:PRK05777 151 RSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKALADGSGNSLLLLF--GLVFLLVGLAFKLSAVPFHMWTP 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   83 EVLQGSSLVTALLLSTMMKL----PPTTILLITSHSLNPT---LLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGW 155
Cdd:PRK05777 229 DVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGY 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  156 MTI-IIIHNP-GLTLLTFY--IYILMTTSIF--LSLDATNTLNLPTLmTSWT----KSPMLNTTLMLALLSLAGLPPLTG 225
Cdd:PRK05777 309 LLVgLAAGTAeGYSAVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAG 387

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 75677968  226 FLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRL 262
Cdd:PRK05777 388 FWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-262 1.48e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 96.75  E-value: 1.48e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLS-----YPP-----ASLLLTTAIAI 70
Cdd:COG0651 138 VMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarlaeLDPglllaAFALLLVGFGI 217

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  71 KLGLAPFHFWFPEVL-QGSSLVTALLLSTMMKLPP-------TTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTR 142
Cdd:COG0651 218 KAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLLVLGLLTMLVGALGALAQRDLK 297

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968 143 KILAFSSISHIGWMTI-IIIHNP-GLTLLTFYI--YILMTTSIFLS----LDATNTLNLPTLMTSWTKSPMLNTTLMLAL 214
Cdd:COG0651 298 RLLAYSSVSQIGYILLgLGLGTPlGLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGA 377

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*...
gi 75677968 215 LSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRL 262
Cdd:COG0651 378 LALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 17-233 1.28e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.31  E-value: 1.28e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   17 RAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPAS----LLLTTAIAIKLGLAPFHFWFPEVLQGSSLVT 92
Cdd:MTH00199 145 YSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTIT 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   93 ALLLSTMMKLPPTTILLITSHSLNPTLLISmsITSIALGGWMGLNQTQTRKILAFSSISHIGWMT--IIIIHNPGL--TL 168
Cdd:MTH00199 225 TALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILfgVAIGSFESIqaSL 302

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 75677968  169 LTFYIYILMTT---SIFLSLDATNTLNLPTLMTSwTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLII 233
Cdd:MTH00199 303 IYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-263 1.49e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.86  E-value: 1.49e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    17 RAIEAATKYFLVQAAASTLVLF--------------SGTANAWHTGQWDITQLSYppASLLLTTAIAIKLGLAPFHFWFP 82
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    83 EVLQGSSLVTALLLST---------MMKLPPTtILLITSHSLNPTLLIsMSITSIALGGWMGLNQTQTRKILAFSSISHI 153
Cdd:TIGR01770 228 DVYEGAPTPVTAFFSIvpkiaifavFLRLFLY-ILFGFSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHV 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   154 GW--MTIIIIHNPGLTLLTFY--IYILMTTSIFLSLDATNTLNLP-----TLMTSWTK-SPMLNTTLMLALLSLAGLPPL 223
Cdd:TIGR01770 306 GYilIGLLAGTLEGIKAVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKtNPILAILILIFMFSLAGIPPL 385

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 75677968   224 TGFLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRLA 263
Cdd:TIGR01770 386 AGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 62-262 1.11e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.90  E-value: 1.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   62 LLLTTAIAIKLGLAPFHFWFPEVLQGSSLVTALLLSTMMKLppTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQT 141
Cdd:MTH00198 303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRI 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  142 RKILAFSSISHIGWMTIIIIHNPGLTLLTFYIYILM-TTSIFLSLDATNTLN------------------------LPTL 196
Cdd:MTH00198 381 KRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALASFTVICTLEefgtrtptsrqrdgsfgnynlvrrLVDL 460

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677968  197 MTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISMLWLL-------SLFFYLRL 262
Cdd:MTH00198 461 TILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVALFaiictciSAFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 17-229 1.17e-16

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 79.66  E-value: 1.17e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   17 RAIEAATKYFLVQAAASTLVLF--------SGTanawHTGQWDI------TQLSYPPASLL----LTTAIAIKLGLAPFH 78
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYgfswlyglSGG----EIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFH 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   79 FWFPEVLQGS-----------SLVTALLLSTMMklppTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAF 147
Cdd:CHL00049 235 QWTPDVYEGSptpvvaflsvtSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAY 310

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  148 SSISHIGWMTIIII---HNPGLTLLTFY--IYILMTTSIF----LSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLA 218
Cdd:CHL00049 311 SSIGQIGYVIIGIIvgdSNDGYASMITYmlFYIFMNLGTFacivLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLG 390

                        250
                 ....*....|.
gi 75677968  219 GLPPLTGFLPK 229
Cdd:CHL00049 391 GIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 4-259 1.83e-15

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 76.27  E-value: 1.83e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   4 LSIIP---LISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQW-----DITQLSYPPAS-----LLLTTAIAI 70
Cdd:COG1008 142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAqlllfLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  71 KLGLAPFHFWFPEVL-QGSSLVTALLLSTMMK----------LPpttILLITSHSLNPtLLISMSITSIALGGWMGLNQT 139
Cdd:COG1008 222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAP-LLAALGVIGIIYGALVALAQT 297

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968 140 QTRKILAFSSISHIGWMTI-IIIHNP-GLTLLTFYI--YILMTTSIFLSL----DATNTLNLPTLMTSWTKSPMLNTTLM 211
Cdd:COG1008 298 DLKRLIAYSSVSHMGFVLLgIFALNPlGLQGAVLQMvsHGLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFL 377

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677968 212 LALLSLAGLPPLTGFLPKWLIIQELIKQELTTTA--------TTISMLWLLSLFFY 259
Cdd:COG1008 378 LAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAIlaalglilTAAYLLWMYQRVFF 433
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-264 4.12e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 72.22  E-value: 4.12e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLS--YPPASLLLT------TAIAIKL 72
Cdd:PRK08375 137 IMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALALKA 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   73 GLAPFHFWFPEVLQG-SSLVTALLLSTMMKLPPTTILLITSHSLNP---------TLLISMSITSIALGGWMGLNQTQTR 142
Cdd:PRK08375 217 AVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDDVK 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  143 KILAFSSISHIGWMTI-IIIHNP-GLTLLTFYI--YILMTTSIFLSL----DATNTLNLPTLMTSWTKSPMLNTTLMLAL 214
Cdd:PRK08375 297 RVLAYSTVSQMGYILLgLALLTPlALAAGLLHLlhHALMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFAVAS 376

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 75677968  215 LSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISMLWLLSLFFYLRLAY 264
Cdd:PRK08375 377 LSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
16-229 1.24e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 70.85  E-value: 1.24e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   16 PRAIEAATKYFLVQAAASTLVLF--------SGTANAWHTGQWDITQLSYPPASLLLT---TAIAIKLGLAPFHFWFPEV 84
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglSGGSTQLSAIALALITSPSLGLALALVfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   85 LQGSSLVTALLLSTMMKLPPTTI---LLITSHSLNPT----LLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMT 157
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  158 IIIIHNP--GLTLLTFYiyilMTTSIFLSLDATNTLNLPTLMTS----------WTKSPMLNTTLMLALLSLAGLPPLTG 225
Cdd:PRK02504 317 IGLVAGTeaGYASMVFY----LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 75677968  226 FLPK 229
Cdd:PRK02504 393 FFGK 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-237 6.30e-13

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 68.64  E-value: 6.30e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  14 HHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQL-----SYPPASLLLTTAIAI------KLGLAPFHFWFP 82
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  83 EVLQGSSLVTALLLS-TM--------MKLPPttiLLITSHSLNPTLLISMSITSIaLGGWMGLNQTQTRKILAFSSISHI 153
Cdd:COG1009 236 DAMEGPTPVSALLHAaTMvkagvyllARLSP---LFALSPVWLTVVAIIGAITAL-FAALIALAQTDIKRVLAYSTVSQL 311

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968 154 GWMTIIIihnpGLTLLTFYIYILMTTSIFLSL---------DATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLT 224
Cdd:COG1009 312 GYMFLAL----GVGAYVAALFHLLTHAFFKALlflgagsviHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFA 387

                       250
                ....*....|...
gi 75677968 225 GFLPKWLIIQELI 237
Cdd:COG1009 388 GFFSKEAILEAAL 400
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 16-259 2.47e-12

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 66.89  E-value: 2.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    16 PRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQW----DITQLSYPPAS-----LLLTTAIAIKLGLAPFHFWFPEV-L 85
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    86 QGSSLVTALLLSTMMKLPPTTILLI-------TSHSLNPtLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTI 158
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   159 IIIHNPGLTLLTFYIYI----LMTTSIFLSL----DATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKW 230
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 75677968   231 LIIQELIKQELTTTA--------TTISMLWLLSLFFY 259
Cdd:TIGR01972 391 LILLGSFKVNPVVAFlaalgivlAAAYMLTLYKRVFF 427
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 46-229 4.89e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 66.49  E-value: 4.89e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   46 HTGQWDITQL-SYPPASLLLTTAIAI-------KLGLAPFHFWFPEVLQGSSLVTALLLST-MMKlppTTILLI------ 110
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAaMVK---AGIYLVarlapg 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  111 --TSHSLNPTLLISMSITSIaLGGWMGLNQTQTRKILAFSSISHIGWMTIII-IHNP-----GLTLLT----FYIYILMT 178
Cdd:PRK12644 260 faDVPVWRPTVLVLGLATML-LGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRdaalaGLAMLLahalFKAALFLV 338

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 75677968  179 TSIflsLD-ATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPK 229
Cdd:PRK12644 339 VGI---IDhSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-232 8.29e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.42  E-value: 8.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   16 PRAIEAATKYFLVQAAASTLVLFsgtANAWHTGQWDITQLSYPP-------------ASLLLTTAIAIKLGLAPFHFWFP 82
Cdd:PRK08376 168 WEAIEAGIKYMFVGSLASSMVLL---GIALLYGQYGTLNMAYLAvkmsenptvvakiALALFIAGLAMKSGAVPVHMWLP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   83 EVL-QGSSLVTALLLST-------MMKLPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIG 154
Cdd:PRK08376 245 DAYpAAPSSISAMLLVIkqaglyaLARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIG 324

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  155 WM------TIIIIHNP-----GLTLLTFYIY-----ILMTTSIFLSLDA----TNTLNLPTLMTSWTKSPMLNTTLMLAL 214
Cdd:PRK08376 325 YMllglgvGLAALGDPamasyGEIALAGGIYhivnhALYKALLFLTAGAviyeTGTRNLNELGGLARTMPKTTIAFLIGA 404

                        250
                 ....*....|....*...
gi 75677968  215 LSLAGLPPLTGFLPKWLI 232
Cdd:PRK08376 405 AAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 62-245 8.31e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 59.24  E-value: 8.31e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   62 LLLTTAIAIKLGLAPFHFWFPE-----------VLQG--SSLVTALLLSTMMKLPPTTILL----ITSHSLNPTLLISMS 124
Cdd:PRK08668 200 LFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYILAWLG 279

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  125 ITSIALGGWMGLNQTQTRKILAFSSISHIGW--MTIIIIHNPGLTLLTFYI--YILMTTSIFLSLDA----TNTLNLPTL 196
Cdd:PRK08668 280 NISIIVGTLMAILQEDIKKLIAYSSVANGGYilVGLGLGTSLGFAGGLFHVfnHALFKGLFFLIFAAviyrTGTTKISEM 359

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 75677968  197 MTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQELTTTA 245
Cdd:PRK08668 360 GGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 4-233 4.45e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 57.13  E-value: 4.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    4 LSIIP---LISKSHHPRAIEAATKYFLVQAAASTLVLFS----GTANAWHTGQWDITQLSYPPASLLLTT--------AI 68
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   69 AIKLGLAPFHFWFPEVLQ-----GSSLVTALLLST----MMK--LPpttILLITSHSLNPtLLISMSITSIALGGWMGLN 137
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVqaptaGSVLLAGILLKMgaygLLRfsLP---LFPDASHEFAP-IIITLGVIAIIYGALVALA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  138 QTQTRKILAFSSISHIGWMTIII--IHNPGLTLLTFYI--YILMTTSIFLSL----DATNTLNLPTLMTSWTKSPMLNTT 209
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVTLGIfaGNQLGIQGAIFQMisHGLSSAALFLLVgvlyDRLHTRDIADYGGLAKVMPVLAAF 377

                        250       260
                 ....*....|....*....|....
gi 75677968  210 LMLALLSLAGLPPLTGFLPKWLII 233
Cdd:PRK05846 378 FLFFAMASLGLPGTSGFVGEFLIL 401
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-234 9.98e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 56.13  E-value: 9.98e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   62 LLLTTAIAIKLGLAPFHFWFPEVL-QGSSLVTALLLSTMMK-----LPPTTILLITSHSLNPTLLISMSITSI--ALGGw 133
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVFAGLLTKvgvyaIIRTHTLLFPGGGLDTLLMVVALLTMVvgILGA- 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  134 mgLNQTQTRKILAFSSISHIGWMT--IIIIHNPGLTLLTFYI--YILMTTSIFLSLD----ATNTLNLPTLMTSWTKSPM 205
Cdd:PRK12665 292 --IAQSDIKRLLSFTLVSHIGYMVfgIALSTVAGLSGAIYYVahHITVQTTLFLVVGlierQAGSSSLRRLGGLAKASPL 369

                        170       180
                 ....*....|....*....|....*....
gi 75677968  206 LNTTLMLALLSLAGLPPLTGFLPKWLIIQ 234
Cdd:PRK12665 370 LAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 57-232 1.19e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 56.08  E-value: 1.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   57 YPPASLLLTTAIAIKLGLAPFHFWFPEVLQGSSLVTALLLS-TMMKLpptTILLITShsLNP---------TLLISMSIT 126
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPvlggtplwqTILPLFGGL 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  127 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPGLTLLTFYIYI----LMTTSIFL---SLD-ATNTLNLPTLMT 198
Cdd:PRK12647 269 TMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMvagIIDhETGTRDITKLGG 348

                        170       180       190
                 ....*....|....*....|....*....|....
gi 75677968  199 SWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLI 232
Cdd:PRK12647 349 LRRAMPITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 25-257 1.39e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 55.51  E-value: 1.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   25 YFLVQAAASTLVLFSGTANAW-HTGQWDITQLSYPPAS-----LLLTTAIAIKLGLAPFHFWFPEVLQGS-SLVTALLLS 97
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSALMSG 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   98 TMMKLPPTTILLITSHSLNPTLLISMSI-----TSIALGGWMGLNQTQTRKILAFSSISHIGwmtiIIIHNPGLTLLtFY 172
Cdd:PRK08667 246 VMLKVAVYGLVRFLMDVLSPELWWGVLIllagsISALLGVIYALKEHDLKGLLAYSSIENIG----IILMGIGLYVI-FG 320

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  173 IYILMTTS---------------IFLSL---------DATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLP 228
Cdd:PRK08667 321 VYGLDTLAllalggalfhslnhaLFKSLlfltagsvvHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFAS 400

                        250       260       270
                 ....*....|....*....|....*....|
gi 75677968  229 KWLIIQELIKQ-ELTTTATTISMLWLLSLF 257
Cdd:PRK08667 401 ELLLYESFFQSfSVADPLIKILLFSVLAIF 430
PRK12650 PRK12650
DUF4040 family protein;
64-229 2.87e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 54.66  E-value: 2.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   64 LTTAIAIKLGLA--------PFHFWFPEVLQGSSLVTALLLSTMMKLPPTTILLITS--HSLNPT---LLISMSITSIAL 130
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  131 GGWMGLNQTQTRKILAFSSISHIGWM-TIIIIHNP---GLTLLTFYIYILMTTSIFLSLDA----TNTLNLPTLMTSWTK 202
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVvdhqAGTRDIRRLGSLWRR 365

                        170       180
                 ....*....|....*....|....*..
gi 75677968  203 SPMLNTTLMLALLSLAGLPPLTGFLPK 229
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
19-291 5.55e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.80  E-value: 5.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   19 IEAATKYFLVQAAASTLVLFS--------GTANAWHTGQwDITQLSYPPA----SLLLTTAIAIKLGLAPFhFWFPEVLQ 86
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGigllygtfGTLNMAHIAM-RLNDMGDTATlttiALLFLLAFGMKAALFPF-MWLPAAYH 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   87 GSSLVTALLLSTMMK-------LPPTTILLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTI- 158
Cdd:PRK12663 235 TPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLg 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  159 IIIHNP-GLTLLTFY---IYILMTTSIFLSLDA---TNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWL 231
Cdd:PRK12663 315 LALGTPaGINGAIFYlvhDMVVKTALFLIAGSLvrlTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVL 394

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677968  232 IIQELIKQE---LTTTATTISMLWLLSLFFYLRLAYCSTITLPPNSSNKMKQWsTKTPANILT 291
Cdd:PRK12663 395 LVQGALDNGayiLLALMLITSLITMYSLFRIFFLAYWGDKDGEEVNFKPIPLY-RKLPLSILA 456
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 21-160 1.08e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 52.73  E-value: 1.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   21 AATKYFLVQAAASTLVLFSGTANAWHTGQ--WDITQL---SYPPASLLLT-----TAIAIKLGLAPFHFWFPEVL-QGSS 89
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75677968   90 LVTALLLSTMMKLPPTTI------LLITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-237 1.43e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 52.26  E-value: 1.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    3 TLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSY--PPASLLLTTAIAIKLGLAPFHFW 80
Cdd:PRK07234 127 SIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFVSGLW 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   81 FPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNPTLLI--SMSITSIALGGWMGLNQTQTRKILAFSSISHIGWmti 158
Cdd:PRK07234 207 LPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIvrIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGF--- 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  159 iIIHNP---GLTLLTfyiYILMTTSIFLSLDAtntlnLPTLMTSWTKSPMLNTT----LMLALLSLAGLPPLTGFLPKWL 231
Cdd:PRK07234 284 -ILAAPlvgGLYALA---HGLVKSTLFLCAGA-----LPSRNFTELISQMLGIGkwipLTMASFSIAGFPLLAGFVSKVL 354


                 ....*.
gi 75677968  232 IIQELI 237
Cdd:PRK07234 355 TLKNLL 360
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 3-238 2.16e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 51.85  E-value: 2.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    3 TLSIIPLISKSHHPRAIEAATKYF---------------LVQAAASTLVLFSGTANAW-----HTGQWDITQLSYppASL 62
Cdd:PRK06458 141 TLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWtellkHASLLDPTLMKL--AFV 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   63 LLTTAIAIKLGLAPFHFWFPE-----------VLQGSSLVTALLLSTMMKLppttILLITSHSLNP-TLLISMSITSIAL 130
Cdd:PRK06458 219 FLLIGFGTKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LIDAAIGSDFPgRLLLIFGLLSVLV 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  131 GGWMGLNQTQTRKILAFSSISHIGWMTIIIihNPGLTLLTFYIYILMT------TSIFLS----LDATNTLNLPTLMTSW 200
Cdd:PRK06458 295 AAFFLLRQRDIKRLFAYSSIEHMGLIAFAL--GIGGPLGIFAALLHMLnhsltkSAIFFAsgnvLQKYGTRDINVIRGLL 372

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 75677968  201 TKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIK 238
Cdd:PRK06458 373 KVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLA 410
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-229 3.11e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 51.75  E-value: 3.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   14 HHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSYPPA--------SLLLTTAIAIKLGLA------PFHF 79
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghPLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   80 WFPEVLQGSSLVTALLLSTMMkLPPTTILLITSH---SLNPTLLISMSITSIA---LGGWMGLNQTQTRKILAFSSISHI 153
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  154 GWMTII----IIHNPGLTLL--TFYIYILMTTSIFLSLDA------TNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLP 221
Cdd:PRK12649 315 AYLMTMygytTYHEPGLGVAaaTFHLLNHATFKACLFLVAgivaheAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 75677968  222 PLTGFLPK 229
Cdd:PRK12649 395 PLNGFLSK 402
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 19-160 6.92e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.14  E-value: 6.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   19 IEAATKYFLVQAAA------STLVLFSGTANAWHTGQWDITQLS-----YPPASLLLT-----TAIAIKLGLAPFHFWFP 82
Cdd:PRK08676 151 IDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLP 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   83 EV-LQGSSLVTALLLSTMMKLPPTTILLITS-------HSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIG 154
Cdd:PRK08676 231 AAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMG 310


                 ....*.
gi 75677968  155 WMTIII 160
Cdd:PRK08676 311 LMLLGI 316
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 62-238 2.98e-06

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 48.28  E-value: 2.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   62 LLLTTAIAIKLGLAPFHFWFPEVLQGSSLVTALLLSTM-MKLPPTTILLITSHSLNPTL-----LISMSITSIALGGWMG 135
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  136 LNQTQTRKILAFSSISHIG--------WMTIIIIHNPGLTLLTFY--IYILMTTSIF---LSLDA------TNTLNLPTL 196
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFksvLFLGAgsvwfrTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 75677968  197 MTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIK 238
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12646 PRK12646
DUF4040 family protein;
57-238 1.43e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 46.29  E-value: 1.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   57 YPPASLLLTTAIAIKLGLAPFHFWFPEVLQGSSLVTALLLS-TMMK-----LPPTTILLITSHSLNPTLlISMSITSIAL 130
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSaTMVKagiflLFRFTPLLGLSNMYIYIV-TFVGLITMLF 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  131 GGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPGLT------LLTFYIYIL-------MTTSIFLSL---------DAT 188
Cdd:PRK12646 288 GSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAqhqqdaIASIYVFVLfaalfhlMNHAIFKCAlfmgvgiidHEA 367

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 75677968  189 NTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIK 238
Cdd:PRK12646 368 GTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 77-234 1.73e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.10  E-value: 1.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   77 FHFWFPEVLQGSSLVTALLLSTMMkLPPTTILLITSHSLNPTLLISMSITSI--ALGGW----MGLNQTQTRKILAFSSI 150
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLFEKAPLTLLIITIfgALTAFfaatVGLVQNDLKKVIAYSTC 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  151 SHIGWMTIII----IHNPGLTLLT----FYIYILMTTSIFLSLDATNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPP 222
Cdd:MTH00032 323 SQLGYMVLIIgiegSHNVGLFHLVnhafFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPY 402

                        170
                 ....*....|..
gi 75677968  223 LTGFLPKWLIIQ 234
Cdd:MTH00032 403 LTGFYSKDLILE 414
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 67-233 2.72e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 45.30  E-value: 2.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   67 AIAIKLGLAPFHFWFPEV-----LQGSSLVTALLLST----MMKLPpTTILLITSHSLNPTLlISMSITSIALGGWMGLN 137
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLggygLVRLS-WPILPLGAQNLAPAV-IAMGIVGIVYGSFATCR 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  138 QTQTRKILAFSSISHIGWMTIIIIHNpGLTLLTFYIYILMTTSIFLSL---------DATNTLNLPTLMTSWTKSPMLNT 208
Cdd:MTH00226 317 QIDVKRLVAYSSVAHMGLVSITLVTH-DIIGLTGSIFIMLAHGIVSSLlfilvtilyDRHHTRLIKYYRGLSITMPIWGT 395

                        170       180
                 ....*....|....*....|....*
gi 75677968  209 TLMLALLSLAGLPPLTGFLPKWLII 233
Cdd:MTH00226 396 IMIVTSLANVAVPPSGNFIGEYLSI 420
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 77-291 2.78e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 45.45  E-value: 2.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   77 FHFWFPEVLQGSSLVTALLLSTMMkLPPTTILLITSHSL---NPTLLISMSIT---SIALGGWMGLNQTQTRKILAFSSI 150
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATM-VTAGVFLLIRSSPLfeqAPLALIIVTIVgslTVFFAATVGLVQNDLKKVIAYSTC 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  151 SHIGWMTIIIihnpGLTLLTFYIYILMTTSIFLSL-------------DATNTLNLPTLMTSwtkSPMLNTTLMLALLSL 217
Cdd:MTH00020 308 SQLGYMVVAC----GLSHYSISLFHLMNHAFFKALlflsagsvihalsDEQDMRKMGGLISF---LPLTYIFFLIGSLSL 380

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  218 AGLPPLTGFLPKWLIIQELIKQELTTTATTISML-WLLSLFFYLRLAYCSTITLPPNSSNKMKQ-----WSTKTPANILT 291
Cdd:MTH00020 381 MGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFsALLTAFYSIRLIYLTFLSNTNLKKAVFFHlhegdWNLLLPLGILA 460
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 24-262 4.10e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.94  E-value: 4.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   24 KYFLVQAAASTL------VLFS--GTANAWHTGQwDITQLSYPPASLLLTTAI------AIKLGLAPFHFWFPEVLQG-- 87
Cdd:PRK07691 162 KYVLINVVSSAFfvvavaILYSvvGTLNMADISV-KIAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYApp 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   88 ---SSLVTALLLSTMMKLPPTTILLITSHSLNPT--LLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTI-III 161
Cdd:PRK07691 241 iaiAALFGALLTKVGVYAIARTFTLFFSHDTSFThyLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVgVAM 320

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  162 HNP-GLTLLTFYI--YILMTTSIFLSLDA----TNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQ 234
Cdd:PRK07691 321 MTEsGMIGAIYYLihDMIVKAALFLLIGImikiTGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400

                        250       260
                 ....*....|....*....|....*...
gi 75677968  235 ELIKQELTTTATTISMLWLLSLFFYLRL 262
Cdd:PRK07691 401 GTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
1-234 4.98e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 44.64  E-value: 4.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    1 INTLSIIPLISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGQWDITQLSY--------PP---ASLLLTTAIA 69
Cdd:PRK06277 131 IAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnptsPViygGLLLLIFGLL 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   70 IKLGLAPFHFWFPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNP--------TLLISMSITSIALGGWMGLNQTQT 141
Cdd:PRK06277 211 YGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTDY 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  142 RKILAFSSISHIGWMTI-IIIHNP-GLTLLTFYI--YILMTTSIFLS----LDATNTLNLPTLMTSWTKSPMLNTTLMLA 213
Cdd:PRK06277 291 KRLLAYHAISQGGYVAAgLALGTPlGIVAGIFHAinHVIYKSALFLGagivSYRTKTSNLRKLGGLLPVMPVVAFMVLCA 370

                        250       260
                 ....*....|....*....|.
gi 75677968  214 LLSLAGLPPLTGFLPKWLIIQ 234
Cdd:PRK06277 371 KLAISGVPPFNGFQSKLMLAQ 391
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-238 1.47e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.18  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   62 LLLTTAIAIKLGLAPFHFWFPEVLQGS-SLVTALLLSTMMKLPPTTI-----------LLITSHSLNpTLLISMSITSIA 129
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  130 LGGWMGLNQTQTRKILAFSSISHIGWMTIIIIHNPGLTLLTFYIYI----LMTTSIFLSLDAT----NTLNLPTLMTSWT 201
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 75677968  202 KSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIK 238
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 9-254 6.43e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.11  E-value: 6.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    9 LISKSHHPRAIEAATKYFLVQAAAStlvLFSGTANAW---HTGQWDITQLSYPPAS------LLLTTAIAIKLGLAPFHF 79
Cdd:PRK06525 152 LISYYQSPKALRSALKALLITHIGS---LGLYLAAATlflQTGTFALSALSGLHGSlkylvfLGILFAAWGKSAQLPFYS 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   80 WFPEVLQGSSLVTALLLSTMMKLPPTTILLITSHSLNP------TLLISMSITSIALGGWMGLNQTQTRKILAFSSISHI 153
Cdd:PRK06525 229 WLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQL 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  154 GWMTI-----IIIHNPGLTLLTFYI--YILMTTSIFLSLDA----TNTLNLPTLMTSWTKSPMLNTTLMLALLSLAGLPP 222
Cdd:PRK06525 309 GYMFFglslaILGSRLALEGSIAYIfnHAFAKSLFFLVAGAlsysCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPP 388

                        250       260       270
                 ....*....|....*....|....*....|..
gi 75677968  223 LTGFLPKWLIIQELIKQELTTTATTISMLWLL 254
Cdd:PRK06525 389 FNGFFSKFPIFAAGFELSVEYWILLPAMVLLL 420
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
19-234 6.56e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.85  E-value: 6.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   19 IEAATKYFLVQAAASTLVLFSGTANAWHTGQwdITQLSYPPASLLLTTAI----AIKLGLAPFHFWFPEVLQGSSLVTAL 94
Cdd:PRK07363 164 IYTAVSGLLVLAAFLGIVWLSGSTSFDYDAI--STQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASPAVAI 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   95 LLSTMMKLPPTTILL--------ITSHSLNPTLLISMSITSIaLGGWMGLNQTQTRKILAFSSISHIGWMTI-------- 158
Cdd:PRK07363 242 LLGGVLAKLGTYGLLrfglqlfpQTWSLVAPGLAIIGTISVI-YGALSAIAQKDIKRMVAYSSIGHMGYILVaaaagtql 320

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  159 --------IIIHNPGLTLLTFYIYILMTTSIFLSLDATNtlnlpTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKW 230
Cdd:PRK07363 321 sllgavaqMISHGLILALLFHLVGIVERKVGTRDLDVLN-----GLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEF 395


                 ....
gi 75677968  231 LIIQ 234
Cdd:PRK07363 396 IVFQ 399
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
4-297 9.10e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.45  E-value: 9.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968    4 LSIIPL---ISKSHHPRAIEAATKYFLVQAAASTLVLFSGTANAWHTGqwdITQLSYPPA---------SLLLTTAI--- 68
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSG---ASSFDYEPLrshtlplstQLLLLAPIlvg 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   69 -AIKLGLAPFHFWFPEV-LQGSSLVTALLLSTMMKLPPTTIL------LITSHSLNPTLLISMSITSIALGGWMGLNQTQ 140
Cdd:PRK06473 215 fGIKIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  141 TRKILAFSSISHIGWMTIIIIHNPGLTLLTFYIYI----LMTTSIFLSL----DATNTLN---LPTLMTSWTKSPMLNTT 209
Cdd:PRK06473 295 MKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMishgLISALLFLLVgvvyKKTGSRDvdvLRGLLNPERGLPITGSL 374

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  210 LMLALLSLAGLPPLTGFLPKWLI---------IQELIKQeLTTTATTISMLWLLSLFFYLRLAyCSTITLPPnssnkmKQ 280
Cdd:PRK06473 375 MILGVMASAGIPGMVGFIAEFLVfrgsfpifpVQTLLCM-IGTGLTAVYFLLLVNRVFFGRLT-AELSNLPR------VL 446

                        330
                 ....*....|....*..
gi 75677968  281 WSTKTPANILTPTLISL 297
Cdd:PRK06473 447 WSERLPALVLAVLIVVL 463
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 71-236 2.52e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 39.49  E-value: 2.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   71 KLGLAPFHFWFPEVLQGS-SLVTALLLSTMMKLPPTTILLITSHSLNPT------LLISMSITSIALGGWMGLNQTQTRK 143
Cdd:PRK06521 223 KAGLVPLHVWLPRAHPAApSHVSALMSGVMLKVAIYGILRVVFDLLGAPgwwwgvLVLALGAISAVLGVLYALAEHDLKR 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  144 ILAFSSISHIGwmtiIIIHNPGLTL--------------LTFYIYILMTTSIFLSL---------DATNTLNLPTL---- 196
Cdd:PRK06521 303 LLAYSTIENIG----IIFVGLGLAMvfiaygmpllaalaLTAALYHLLNHALFKSLlflgagavlHATGTRDMEKLggli 378

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 75677968  197 -MTSWTKSPMLnttlmLALLSLAGLPPLTGFLPKWLIIQEL 236
Cdd:PRK06521 379 rRMPWTAWAFL-----IGCLAISALPPLNGFVSEWLLLQSL 414
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 257-298 2.86e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 35.31  E-value: 2.86e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 75677968   257 FFYLRLAYCSTITLPPNSSNKMKQWSTKTPANI-LTPTLISLS 298
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLS 43
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 21-160 3.41e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.92  E-value: 3.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   21 AATKYFLVQAAASTLVLFSGTANAWHTG--QWDITQLS---YPPASLLLT-----TAIAIKLGLAPFHFWFPEVL-QGSS 89
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAakdFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHgEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75677968   90 LVTALLLSTMMKLPPTTIL------LITSHSLNPTLLISMSITSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 160
Cdd:PRK02546 246 PVHMLLAGILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 48-234 4.31e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.59  E-value: 4.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   48 GQWDITQLSYPPASLLLTTAIAI----KLGLAPFHFWFPEVLQGSSLVTALLLSTMMKLPPTTIL------LITSHSLNP 117
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypfLSSTYWFNP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  118 TLLISMSITSIaLGGWMGLNQTQTRKILAFSSISHIG-WMTIIIIHNPGLTLLTFYIYILMTTSIFLSLDAT-----NTL 191
Cdd:MTH00207 245 ALLLTASLTML-MAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLihshhHSQ 323

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 75677968  192 NLPTLMTSWTKSPMLNTTLMLALLSLAGLPPLTGFLPKWLIIQ 234
Cdd:MTH00207 324 DLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 62-295 4.72e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 38.45  E-value: 4.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968   62 LLLTTAI--AIKLGLapfHFWFPEVLQGSSLVTALLLSTMMkLPPTTILLITSHSL---NPTLLISMSIT---SIALGGW 133
Cdd:MTH00210 216 LLFIGAVgkSAQLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLIIRSGPLfegSPLALTIVTILgalTAFFAAT 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  134 MGLNQTQTRKILAFSSISHIGWMTIIIihnpGLTLLTFYIYILMTTSIFLSL---------DATNTLNLPTLMTSWTKS- 203
Cdd:MTH00210 292 VGVVQNDLKKVIAYSTCSQLGYMVMVC----GISNYSTSLFHLMNHAFFKALlflsagsviHAVSDEQDMRKMGGLIKSi 367

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677968  204 PMLNTTLMLALLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTI-SMLWLLSLFFYLRLAYCSTITlPPNSSNKMKQWS 282
Cdd:MTH00210 368 PFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLgSFSALLTAFYSIRLIYLTFIT-NTNSKKEVFIGV 446

                        250
                 ....*....|...
gi 75677968  283 TKTPANILTPTLI 295
Cdd:MTH00210 447 HESSWNITFPLLL 459
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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