|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-296 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 614.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00119 55 HYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00119 135 PWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNS 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00119 215 NTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00119 295 LAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-289 |
3.09e-109 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 322.12 E-value: 3.09e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYlyKE----TWNTGIILLLTLMATAFV 76
Cdd:COG1290 63 YYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFT 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 77 GYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNP 155
Cdd:COG1290 141 GYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 156 LGI----SSNSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 231
Cdd:COG1290 221 PGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAI 298
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 232 P--NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQP 289
Cdd:COG1290 299 PgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-153 |
6.09e-72 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 220.32 E-value: 6.09e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSY--LYKETWNTGIILLLTLMATAFVGY 78
Cdd:cd00284 46 HYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGY 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75677918 79 VLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSN 153
Cdd:cd00284 126 VLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-151 |
2.62e-62 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 195.29 E-value: 2.62e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYG--SYLYKETWNTGIILLLTLMATAFVGY 78
Cdd:pfam00033 37 YYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGY 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677918 79 VLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESG 151
Cdd:pfam00033 117 VLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
183-277 |
1.97e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 60.97 E-value: 1.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 183 MSLLTSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAM 262
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122
|
90
....*....|....*...
gi 75677918 263 TFR---PMSQLLFWTLAA 277
Cdd:TIGR01156 123 PFRrpvATTVFLFGTVVA 140
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-296 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 614.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00119 55 HYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00119 135 PWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNS 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00119 215 NTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00119 295 LAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-296 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 566.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00131 54 HYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00131 134 PWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNS 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00131 214 DADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00131 294 LLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFII 349
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-296 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 555.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00100 54 HYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00100 134 PWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPS 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00100 214 DSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00100 294 LLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFII 349
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-295 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 545.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00074 55 HYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00074 135 PWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNS 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00074 215 NPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLA 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFI 295
Cdd:MTH00074 295 LLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFI 349
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-296 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 529.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00191 51 HYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00191 131 PWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNS 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00191 211 DSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLA 290
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00191 291 LVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFIL 346
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-296 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 528.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00156 44 HYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00156 124 PWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNS 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00156 204 NIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIA 283
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00156 284 LVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYIL 339
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-296 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 506.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00145 55 HYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00145 135 PWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDS 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00145 215 DGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIA 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00145 295 LVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYET 350
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-296 |
1.45e-176 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 492.30 E-value: 1.45e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00034 54 HYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00034 134 PWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNS 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00034 214 NYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIA 293
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00034 294 LVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFIL 349
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-295 |
3.06e-169 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 473.78 E-value: 3.06e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00016 55 HYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00016 135 PWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNS 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00016 215 NSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVA 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFI 295
Cdd:MTH00016 295 MFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYE 349
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-296 |
1.80e-148 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 421.42 E-value: 1.80e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00022 53 HYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00022 133 PWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNS 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00022 213 SVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVA 292
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00022 293 MFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFIL 348
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-296 |
6.03e-147 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 417.57 E-value: 6.03e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00053 55 HYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00053 135 PWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRS 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00053 215 DIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVA 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00053 295 LVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYIL 350
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-296 |
1.53e-143 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 408.93 E-value: 1.53e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00224 55 HYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00224 135 PWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINA 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00224 215 DSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVA 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00224 295 LFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEG 350
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-289 |
1.32e-114 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 335.37 E-value: 1.32e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00033 51 HYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00033 131 PWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVG 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 238
Cdd:MTH00033 211 LSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 75677918 239 LALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQP 289
Cdd:MTH00033 291 LALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAP 341
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-289 |
3.09e-109 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 322.12 E-value: 3.09e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYlyKE----TWNTGIILLLTLMATAFV 76
Cdd:COG1290 63 YYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFT 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 77 GYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNP 155
Cdd:COG1290 141 GYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 156 LGI----SSNSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 231
Cdd:COG1290 221 PGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAI 298
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 232 P--NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTWIGSQP 289
Cdd:COG1290 299 PgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-296 |
8.44e-100 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 296.85 E-value: 8.44e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVL 80
Cdd:MTH00086 43 YYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 81 PWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00086 123 VWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHG 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 161 NSDKIPFHPYFSLKDLLGFTIMMsLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00086 203 DYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIA 281
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAanlFILTWIGSQPVEHPFII 296
Cdd:MTH00086 282 LLMSIVVFYFFIFVNNYTSCLNKLNKFLVFSFIVVN---VILSWLGQCLVEYPFLF 334
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-296 |
1.30e-81 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 250.29 E-value: 1.30e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 2 YTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLP 81
Cdd:MTH00046 46 YVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 82 WGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSNNPLGISSN 161
Cdd:MTH00046 126 WHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNG 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 162 -SDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLA 240
Cdd:MTH00046 206 ySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LV 284
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 75677918 241 LAASVLILFLSPLLHKSKqramTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:MTH00046 285 LVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLL 336
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-153 |
6.09e-72 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 220.32 E-value: 6.09e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSY--LYKETWNTGIILLLTLMATAFVGY 78
Cdd:cd00284 46 HYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGY 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75677918 79 VLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESGSN 153
Cdd:cd00284 126 VLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-151 |
2.62e-62 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 195.29 E-value: 2.62e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYG--SYLYKETWNTGIILLLTLMATAFVGY 78
Cdd:pfam00033 37 YYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGY 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677918 79 VLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFMITSLVLIHLTFLHESG 151
Cdd:pfam00033 117 VLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
154-296 |
2.49e-53 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 170.90 E-value: 2.49e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 154 NPLGISSNSDKIPFHPYFSLKDLLGFTIMMSLLTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 233
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677918 234 KLGGVLALAASVLILFLSPLLHKSKQRAmTFRPMSQLLFWTLAANLFILTWIGSQPVEHPFII 296
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSL 142
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
35-200 |
5.35e-47 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 155.48 E-value: 5.35e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 35 SFFFICIYFHIARGFYYGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAW 112
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 113 GGFSVDNPTLTRFFTLHF-LLPFMITSLVLIHLTFLHESGSNNPLGISSNSDKIPFHPYFSLKDLLGFTIMMSLLTSLAL 191
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 75677918 192 FSPNLLGDP 200
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
205-296 |
5.18e-44 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 145.31 E-value: 5.18e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 205 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWTLAANLFILTW 284
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90
....*....|..
gi 75677918 285 IGSQPVEHPFII 296
Cdd:pfam00032 81 LGKQPPTGPYTL 92
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-156 |
5.06e-27 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 105.18 E-value: 5.06e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKE--TWNTGIILLLTLMATAFVGY 78
Cdd:PRK03735 65 YYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGY 144
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 75677918 79 VLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNPL 156
Cdd:PRK03735 145 LLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-156 |
2.02e-26 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 103.26 E-value: 2.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASFFFICIYFHIARGFYYGSYLYKE--TWNTGIILLLTLMATAFVGY 78
Cdd:CHL00070 57 YYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGY 136
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 75677918 79 VLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFMITSLVLIHLTFLHESGSNNPL 156
Cdd:CHL00070 137 SLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
184-272 |
5.87e-12 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 62.71 E-value: 5.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 184 SLLTSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHK-SKQRAM 262
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNP 123
|
90
....*....|
gi 75677918 263 TFRPMSQLLF 272
Cdd:CHL00058 124 FRRPVATTVF 133
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
183-272 |
9.98e-12 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 62.12 E-value: 9.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 183 MSLLTSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAM 262
Cdd:COG5679 49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQN 123
|
90
....*....|.
gi 75677918 263 TF-RPMSQLLF 272
Cdd:COG5679 124 PFrRPVATAVF 134
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
183-277 |
1.97e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 60.97 E-value: 1.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677918 183 MSLLTSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAM 262
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122
|
90
....*....|....*...
gi 75677918 263 TFR---PMSQLLFWTLAA 277
Cdd:TIGR01156 123 PFRrpvATTVFLFGTVVA 140
|
|
| |
