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Conserved domains on  [gi|75677908|gb|ABA19371|]
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cytochrome b, partial (mitochondrion) [Amazona farinosa]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-296 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 621.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00119  55 HYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00119 135 PWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNS 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00119 215 NTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00119 295 LAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-296 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 621.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00119  55 HYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00119 135 PWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNS 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00119 215 NTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00119 295 LAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-289 3.21e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.44  E-value: 3.21e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYlyKE----TWNTGVILLLTLMATAFV 76
Cdd:COG1290  63 YYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFT 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  77 GYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLVLIHLTFLHESGSNNP 155
Cdd:COG1290 141 GYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNP 220

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908 156 LGI----SSNCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 231
Cdd:COG1290 221 PGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAI 298

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908 232 P--NKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQP 289
Cdd:COG1290 299 PgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-153 2.48e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 223.78  E-value: 2.48e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSY--LYKETWNTGVILLLTLMATAFVGY 78
Cdd:cd00284  46 HYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGY 125

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  79 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSN 153
Cdd:cd00284 126 VLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-151 2.03e-64

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 200.69  E-value: 2.03e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908     1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYG--SYLYKETWNTGVILLLTLMATAFVGY 78
Cdd:pfam00033  37 YYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGY 116

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677908    79 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESG 151
Cdd:pfam00033 117 VLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 189-272 8.23e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 8.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   189 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPI 267
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128


                  ....*
gi 75677908   268 SQLLF 272
Cdd:TIGR01156 129 ATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-296 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 621.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00119  55 HYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00119 135 PWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNS 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00119 215 NTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00119 295 LAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
CYTB MTH00131
cytochrome b; Provisional
 1-295 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 562.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00131  54 HYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00131 134 PWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNS 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00131 214 DADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFI 295
Cdd:MTH00131 294 LLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFI 348
CYTB MTH00100
cytochrome b; Provisional
 1-296 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 560.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00100  54 HYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00100 134 PWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPS 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00100 214 DSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00100 294 LLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFII 349
CYTB MTH00074
cytochrome b; Provisional
 1-296 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 547.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00074  55 HYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00074 135 PWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNS 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00074 215 NPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00074 295 LLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIE 350
CYTB MTH00156
cytochrome b; Provisional
 1-295 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 533.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00156  44 HYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00156 124 PWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNS 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00156 204 NIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIA 283

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFI 295
Cdd:MTH00156 284 LVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYI 338
CYTB MTH00191
cytochrome b; Provisional
 1-295 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 530.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00191  51 HYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVL 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00191 131 PWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNS 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00191 211 DSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLA 290

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFI 295
Cdd:MTH00191 291 LVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFI 345
CYTB MTH00145
cytochrome b; Provisional
 1-296 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 512.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00145  55 HYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00145 135 PWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDS 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00145 215 DGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00145 295 LVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYET 350
CYTB MTH00034
cytochrome b; Validated
 1-295 7.94e-177

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 493.07  E-value: 7.94e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00034  54 HYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00034 134 PWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNS 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00034 214 NYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIA 293

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFI 295
Cdd:MTH00034 294 LVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFI 348
CYTB MTH00016
cytochrome b; Validated
 1-296 5.10e-171

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 478.40  E-value: 5.10e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00016  55 HYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00016 135 PWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNS 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00016 215 NSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00016 295 MFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEF 350
CYTB MTH00022
cytochrome b; Validated
 1-295 2.21e-149

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 423.73  E-value: 2.21e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00022  53 HYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVL 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00022 133 PWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNS 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00022 213 SVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVA 292

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFI 295
Cdd:MTH00022 293 MFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFI 347
CYTB MTH00053
cytochrome b; Provisional
 1-295 9.00e-148

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 419.50  E-value: 9.00e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00053  55 HYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00053 135 PWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRS 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00053 215 DIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFI 295
Cdd:MTH00053 295 LVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYI 349
CYTB MTH00224
cytochrome b; Provisional
 1-296 3.46e-144

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 410.47  E-value: 3.46e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00224  55 HYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00224 135 PWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINA 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00224 215 DSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVA 294

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00224 295 LFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEG 350
CYTB MTH00033
cytochrome b; Provisional
 1-289 6.51e-116

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 338.84  E-value: 6.51e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00033  51 HYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVL 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00033 131 PWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVG 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 238
Cdd:MTH00033 211 LSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 75677908  239 LALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQP 289
Cdd:MTH00033 291 LALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAP 341
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-289 3.21e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.44  E-value: 3.21e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYlyKE----TWNTGVILLLTLMATAFV 76
Cdd:COG1290  63 YYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFT 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  77 GYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLVLIHLTFLHESGSNNP 155
Cdd:COG1290 141 GYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNP 220

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908 156 LGI----SSNCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 231
Cdd:COG1290 221 PGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAI 298

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908 232 P--NKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQP 289
Cdd:COG1290 299 PgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
CYTB MTH00086
cytochrome b; Provisional
 1-296 5.71e-102

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 302.24  E-value: 5.71e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVL 80
Cdd:MTH00086  43 YYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   81 PWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISS 160
Cdd:MTH00086 123 VWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHG 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  161 NCDKIPFHPYFSLKDLLGfMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 240
Cdd:MTH00086 203 DYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIA 281

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 75677908  241 LAASVLILFLSPLLHKSkqrTMAFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:MTH00086 282 LLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLF 334
CYTB MTH00046
cytochrome b; Validated
 2-295 2.58e-80

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 246.82  E-value: 2.58e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    2 YTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLP 81
Cdd:MTH00046  46 YVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   82 WGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSNNPLGISSN 161
Cdd:MTH00046 126 WHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  162 -CDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLA 240
Cdd:MTH00046 206 ySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LV 284

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  241 LAASVLILFLSPLLHKSKqrtmAFRPISQLLFWALAANLFILTWVGSQPVEHPFI 295
Cdd:MTH00046 285 LVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYL 335
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-153 2.48e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 223.78  E-value: 2.48e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSY--LYKETWNTGVILLLTLMATAFVGY 78
Cdd:cd00284  46 HYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGY 125

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75677908  79 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESGSN 153
Cdd:cd00284 126 VLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-151 2.03e-64

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 200.69  E-value: 2.03e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908     1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYG--SYLYKETWNTGVILLLTLMATAFVGY 78
Cdd:pfam00033  37 YYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGY 116

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677908    79 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITSLVLIHLTFLHESG 151
Cdd:pfam00033 117 VLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 154-296 6.06e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 174.76  E-value: 6.06e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908 154 NPLGISSNCDKIPFHPYFSLKDLLGFMIMFLSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 233
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75677908 234 KLGGVLALAASVLILFLSPLLHKSKQRTMaFRPISQLLFWALAANLFILTWVGSQPVEHPFIT 296
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSL 142
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
35-200 4.09e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.48  E-value: 4.09e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    35 SLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 112
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   113 GGFSVDNPTLTRFFALHF-LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFLSLSTLAL 191
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 75677908   192 FSPNLLGDP 200
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
205-296 1.14e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 144.54  E-value: 1.14e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   205 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTW 284
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90
                  ....*....|..
gi 75677908   285 VGSQPVEHPFIT 296
Cdd:pfam00032  81 LGKQPPTGPYTL 92
PRK03735 PRK03735
cytochrome b6; Provisional
 1-156 8.11e-30

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 112.50  E-value: 8.11e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGY 78
Cdd:PRK03735  65 YYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGY 144

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 75677908   79 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLVLIHLTFLHESGSNNPL 156
Cdd:PRK03735 145 LLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-156 2.65e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 108.27  E-value: 2.65e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908    1 HYTADTSLAFSSVANMCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGY 78
Cdd:CHL00070  57 YYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGY 136

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 75677908   79 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMITSLVLIHLTFLHESGSNNPL 156
Cdd:CHL00070 137 SLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 189-272 1.93e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.87  E-value: 1.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908  189 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHK-SKQRTMAFRPI 267
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPV 128


                 ....*
gi 75677908  268 SQLLF 272
Cdd:CHL00058 129 ATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 189-272 2.27e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.96  E-value: 2.27e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908 189 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPI 267
Cdd:COG5679  55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPV 129


                ....*
gi 75677908 268 SQLLF 272
Cdd:COG5679 130 ATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 189-272 8.23e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 8.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75677908   189 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRTMAF-RPI 267
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128


                  ....*
gi 75677908   268 SQLLF 272
Cdd:TIGR01156 129 ATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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