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Conserved domains on  [gi|755524224|ref|XP_011240308|]
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interferon-induced transmembrane protein 10 isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CD225 super family cl24165
Interferon-induced transmembrane protein; This family includes the human leukocyte antigen ...
124-152 5.64e-05

Interferon-induced transmembrane protein; This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.


The actual alignment was detected with superfamily member pfam04505:

Pssm-ID: 461336  Cd Length: 68  Bit Score: 39.79  E-value: 5.64e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 755524224  124 NDYYLWSIFNFVylnFCCL--GFIALAYSLK 152
Cdd:pfam04505   3 PDYLVWSIFSTL---CCCLplGIVAIVYSVK 30
 
Name Accession Description Interval E-value
CD225 pfam04505
Interferon-induced transmembrane protein; This family includes the human leukocyte antigen ...
124-152 5.64e-05

Interferon-induced transmembrane protein; This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.


Pssm-ID: 461336  Cd Length: 68  Bit Score: 39.79  E-value: 5.64e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 755524224  124 NDYYLWSIFNFVylnFCCL--GFIALAYSLK 152
Cdd:pfam04505   3 PDYLVWSIFSTL---CCCLplGIVAIVYSVK 30
 
Name Accession Description Interval E-value
CD225 pfam04505
Interferon-induced transmembrane protein; This family includes the human leukocyte antigen ...
124-152 5.64e-05

Interferon-induced transmembrane protein; This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.


Pssm-ID: 461336  Cd Length: 68  Bit Score: 39.79  E-value: 5.64e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 755524224  124 NDYYLWSIFNFVylnFCCL--GFIALAYSLK 152
Cdd:pfam04505   3 PDYLVWSIFSTL---CCCLplGIVAIVYSVK 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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