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Conserved domains on  [gi|755523081|ref|XP_006508244|]
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protein FAM24A-like isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM24 super family cl21058
FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 77-163 8.56e-19

FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 87 and 101 amino acids in length. There are two conserved sequence motifs: FDLRT and CLY. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam15193:

Pssm-ID: 464556  Cd Length: 69  Bit Score: 75.56  E-value: 8.56e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523081   77 LYSKISKALKSPGiakeaDDECYIDPCKDPHESIILANSIPAEachsyqantiavaSCGPLQCCNVCGVYADVNSLPPCL 156
Cdd:pfam15193   1 LYFKISKALKAAK-----EPDPCADPCKNTQDKVIRAKTIAAE-------------SCRTLQCCDECSMYADYDPLPPCF 62


                  ....*..
gi 755523081  157 CSIREGL 163
Cdd:pfam15193  63 CDTNEGL 69
 
Name Accession Description Interval E-value
FAM24 pfam15193
FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 77-163 8.56e-19

FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 87 and 101 amino acids in length. There are two conserved sequence motifs: FDLRT and CLY. The function of this family is unknown.


Pssm-ID: 464556  Cd Length: 69  Bit Score: 75.56  E-value: 8.56e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523081   77 LYSKISKALKSPGiakeaDDECYIDPCKDPHESIILANSIPAEachsyqantiavaSCGPLQCCNVCGVYADVNSLPPCL 156
Cdd:pfam15193   1 LYFKISKALKAAK-----EPDPCADPCKNTQDKVIRAKTIAAE-------------SCRTLQCCDECSMYADYDPLPPCF 62


                  ....*..
gi 755523081  157 CSIREGL 163
Cdd:pfam15193  63 CDTNEGL 69
 
Name Accession Description Interval E-value
FAM24 pfam15193
FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 77-163 8.56e-19

FAM24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 87 and 101 amino acids in length. There are two conserved sequence motifs: FDLRT and CLY. The function of this family is unknown.


Pssm-ID: 464556  Cd Length: 69  Bit Score: 75.56  E-value: 8.56e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755523081   77 LYSKISKALKSPGiakeaDDECYIDPCKDPHESIILANSIPAEachsyqantiavaSCGPLQCCNVCGVYADVNSLPPCL 156
Cdd:pfam15193   1 LYFKISKALKAAK-----EPDPCADPCKNTQDKVIRAKTIAAE-------------SCRTLQCCDECSMYADYDPLPPCF 62


                  ....*..
gi 755523081  157 CSIREGL 163
Cdd:pfam15193  63 CDTNEGL 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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