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Conserved domains on  [gi|755434583|gb|AJJ34708|]
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ybfN-like lipofamily protein [Yersinia rochesterensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbfN super family cl16518
YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of ...
 22-108 8.01e-40

YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Members of this family are lipoproteins.


The actual alignment was detected with superfamily member pfam13982:

Pssm-ID: 433624  Cd Length: 88  Bit Score: 127.41  E-value: 8.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755434583   22 PVQPEDSKLKQAYSACINASEGQPERLIPCQAVLNVLKQEKAHQAFTDKETVRVLDYQRCIDAAHTGNGQAYDAQCGKLW 101
Cdd:pfam13982   2 DAPRQDSRLKEAYSACINTAEGNPDKIEACQSVLNVLKKEKQHQQFAEQESVRVLDYQQCINARKTGNDQAVKADCDKIW 81


                  ....*..
gi 755434583  102 QEIRKNN 108
Cdd:pfam13982  82 QEIRANN 88
 
Name Accession Description Interval E-value
YbfN pfam13982
YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of ...
 22-108 8.01e-40

YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Members of this family are lipoproteins.


Pssm-ID: 433624  Cd Length: 88  Bit Score: 127.41  E-value: 8.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755434583   22 PVQPEDSKLKQAYSACINASEGQPERLIPCQAVLNVLKQEKAHQAFTDKETVRVLDYQRCIDAAHTGNGQAYDAQCGKLW 101
Cdd:pfam13982   2 DAPRQDSRLKEAYSACINTAEGNPDKIEACQSVLNVLKKEKQHQQFAEQESVRVLDYQQCINARKTGNDQAVKADCDKIW 81


                  ....*..
gi 755434583  102 QEIRKNN 108
Cdd:pfam13982  82 QEIRANN 88
 
Name Accession Description Interval E-value
YbfN pfam13982
YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of ...
 22-108 8.01e-40

YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Members of this family are lipoproteins.


Pssm-ID: 433624  Cd Length: 88  Bit Score: 127.41  E-value: 8.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755434583   22 PVQPEDSKLKQAYSACINASEGQPERLIPCQAVLNVLKQEKAHQAFTDKETVRVLDYQRCIDAAHTGNGQAYDAQCGKLW 101
Cdd:pfam13982   2 DAPRQDSRLKEAYSACINTAEGNPDKIEACQSVLNVLKKEKQHQQFAEQESVRVLDYQQCINARKTGNDQAVKADCDKIW 81


                  ....*..
gi 755434583  102 QEIRKNN 108
Cdd:pfam13982  82 QEIRANN 88
DUF6491 pfam20101
Family of unknown function (DUF6491); This family of proteins is functionally uncharacterized. ...
 1-49 6.20e-03

Family of unknown function (DUF6491); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 139 and 155 amino acids in length.


Pssm-ID: 437933  Cd Length: 138  Bit Score: 33.89  E-value: 6.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 755434583    1 MKKVLFIIAAVMGLSACATQGPVQPEDSKLkqaysACINASEGQPERLI 49
Cdd:pfam20101   2 KRTLLLAAAAALLLAACASTPPAQSDAQRL-----ALYRAHAGEPVRSF 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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