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Conserved domains on  [gi|753801480|ref|WP_041557120|]
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PadR family transcriptional regulator [Carnobacterium sp. 17-4]

Protein Classification

PadR family transcriptional regulator( domain architecture ID 11447737)

PadR family transcriptional regulator similar to the phenolic acid decarboxylation repressor, which is a transcription factor that represses genes associated with the phenolic acid stress response in gram-positive bacteria

Gene Ontology:  GO:0003677|GO:0003700
PubMed:  10679470|10908318|10473770|15808743|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
3-100 8.31e-16

DNA-binding transcriptional regulator, PadR family [Transcription];


:

Pssm-ID: 441301  Cd Length: 102  Bit Score: 66.50  E-value: 8.31e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753801480   3 RNKHLPLTETVYYILLSL-FEPAHGYLIIQKVEDLSNGEVRMAAGTLYGAIENLLKLKFIKPVENE---DKRRKVYVITQ 78
Cdd:COG1695    1 MKRQLRKGTLELLILALLaEGPMYGYEIIKELEERSGGFWKVSEGTLYPALKRLEKEGLVESEWEEsegGPRRKYYRLTE 80

                         90       100
                 ....*....|....*....|..
gi 753801480  79 EGKNILFLDCERMKHIVAITEE 100
Cdd:COG1695   81 AGREELAEWLEEWEKLAEALEA 102
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
3-100 8.31e-16

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 66.50  E-value: 8.31e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753801480   3 RNKHLPLTETVYYILLSL-FEPAHGYLIIQKVEDLSNGEVRMAAGTLYGAIENLLKLKFIKPVENE---DKRRKVYVITQ 78
Cdd:COG1695    1 MKRQLRKGTLELLILALLaEGPMYGYEIIKELEERSGGFWKVSEGTLYPALKRLEKEGLVESEWEEsegGPRRKYYRLTE 80

                         90       100
                 ....*....|....*....|..
gi 753801480  79 EGKNILFLDCERMKHIVAITEE 100
Cdd:COG1695   81 AGREELAEWLEEWEKLAEALEA 102
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 22-81 4.55e-09

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 48.78  E-value: 4.55e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 753801480   22 EPAHGYLIIQKVEDLSNGEVRMAAGTLYGAIENLLKLKFI---KPVENEDKRRKVYVITQEGK 81
Cdd:pfam03551   8 QPRYGYEIIKELEELSGGFWRPSEGTLYPILKRLEKEGLVeseWVDSGGGPPRKYYRLTDAGR 70
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
3-100 8.31e-16

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 66.50  E-value: 8.31e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753801480   3 RNKHLPLTETVYYILLSL-FEPAHGYLIIQKVEDLSNGEVRMAAGTLYGAIENLLKLKFIKPVENE---DKRRKVYVITQ 78
Cdd:COG1695    1 MKRQLRKGTLELLILALLaEGPMYGYEIIKELEERSGGFWKVSEGTLYPALKRLEKEGLVESEWEEsegGPRRKYYRLTE 80

                         90       100
                 ....*....|....*....|..
gi 753801480  79 EGKNILFLDCERMKHIVAITEE 100
Cdd:COG1695   81 AGREELAEWLEEWEKLAEALEA 102
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 22-81 4.55e-09

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 48.78  E-value: 4.55e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 753801480   22 EPAHGYLIIQKVEDLSNGEVRMAAGTLYGAIENLLKLKFI---KPVENEDKRRKVYVITQEGK 81
Cdd:pfam03551   8 QPRYGYEIIKELEELSGGFWRPSEGTLYPILKRLEKEGLVeseWVDSGGGPPRKYYRLTDAGR 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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