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Conserved domains on  [gi|753749140|gb|AJG98577|]
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hypothetical protein LF65_01979 [Clostridium beijerinckii]

Protein Classification

DUF1980 domain-containing protein( domain architecture ID 10007841)

DUF1980 domain-containing protein similar to Bacillus subtilis UPF0703 protein YcgQ and Streptococcus mutans two-component membrane permease complex subunit SMU_746c involved in acidogenesis, biofilm formation and low-pH survival

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcgQ COG3689
Uncharacterized membrane protein YcgQ, UPF0703/DUF1980 family [Function unknown];
147-244 5.07e-22

Uncharacterized membrane protein YcgQ, UPF0703/DUF1980 family [Function unknown];


:

Pssm-ID: 442905  Cd Length: 111  Bit Score: 87.26  E-value: 5.07e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753749140 147 LDDIRINPEKYIGKKLEIHGFVCKENYLNKDQIIIGRIIMTCCAADSKIVGIVGDYDKSYQLKENDKIKVIGEvgssVIK 226
Cdd:COG3689    7 VRDIYDNPDAYTGKTVKVTGFVYRDPDLPENQFVLARFVITCCAADAYPVGLLVKGPGADSLPNDTWVEVTGT----LST 82

                         90
                 ....*....|....*...
gi 753749140 227 DESNVEHKIPSIKIEKLE 244
Cdd:COG3689   83 ETYPYGKRVPVLKVTSIE 100
 
Name Accession Description Interval E-value
YcgQ COG3689
Uncharacterized membrane protein YcgQ, UPF0703/DUF1980 family [Function unknown];
147-244 5.07e-22

Uncharacterized membrane protein YcgQ, UPF0703/DUF1980 family [Function unknown];


Pssm-ID: 442905  Cd Length: 111  Bit Score: 87.26  E-value: 5.07e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753749140 147 LDDIRINPEKYIGKKLEIHGFVCKENYLNKDQIIIGRIIMTCCAADSKIVGIVGDYDKSYQLKENDKIKVIGEvgssVIK 226
Cdd:COG3689    7 VRDIYDNPDAYTGKTVKVTGFVYRDPDLPENQFVLARFVITCCAADAYPVGLLVKGPGADSLPNDTWVEVTGT----LST 82

                         90
                 ....*....|....*...
gi 753749140 227 DESNVEHKIPSIKIEKLE 244
Cdd:COG3689   83 ETYPYGKRVPVLKVTSIE 100
TIGR03943 TIGR03943
TIGR03943 family protein; Members of this occur in gene pairs with members of pfam03773. The ...
 147-244 2.83e-15

TIGR03943 family protein; Members of this occur in gene pairs with members of pfam03773. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region.


Pssm-ID: 274870 [Multi-domain]  Cd Length: 219  Bit Score: 72.31  E-value: 2.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753749140  147 LDDIRINPEKYIGKKLEIHGFVCKENYLNKDQIIIGRIIMTCCAADSKIVGIVGDYDKSYQLKENDKIKVIGEVGSSVIK 226
Cdd:TIGR03943 118 LRVIYPDPDSYDGRKVEVTGFVYRDPDLPDNEFVLARFVITCCAADAQPVGLLVKGPNAEQLPNDTWVRVEGTLSTETPN 197

                          90
                  ....*....|....*...
gi 753749140  227 DEsnvehKIPSIKIEKLE 244
Cdd:TIGR03943 198 GR-----RIPVIQVTSVE 210
 
Name Accession Description Interval E-value
YcgQ COG3689
Uncharacterized membrane protein YcgQ, UPF0703/DUF1980 family [Function unknown];
147-244 5.07e-22

Uncharacterized membrane protein YcgQ, UPF0703/DUF1980 family [Function unknown];


Pssm-ID: 442905  Cd Length: 111  Bit Score: 87.26  E-value: 5.07e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753749140 147 LDDIRINPEKYIGKKLEIHGFVCKENYLNKDQIIIGRIIMTCCAADSKIVGIVGDYDKSYQLKENDKIKVIGEvgssVIK 226
Cdd:COG3689    7 VRDIYDNPDAYTGKTVKVTGFVYRDPDLPENQFVLARFVITCCAADAYPVGLLVKGPGADSLPNDTWVEVTGT----LST 82

                         90
                 ....*....|....*...
gi 753749140 227 DESNVEHKIPSIKIEKLE 244
Cdd:COG3689   83 ETYPYGKRVPVLKVTSIE 100
TIGR03943 TIGR03943
TIGR03943 family protein; Members of this occur in gene pairs with members of pfam03773. The ...
 147-244 2.83e-15

TIGR03943 family protein; Members of this occur in gene pairs with members of pfam03773. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region.


Pssm-ID: 274870 [Multi-domain]  Cd Length: 219  Bit Score: 72.31  E-value: 2.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753749140  147 LDDIRINPEKYIGKKLEIHGFVCKENYLNKDQIIIGRIIMTCCAADSKIVGIVGDYDKSYQLKENDKIKVIGEVGSSVIK 226
Cdd:TIGR03943 118 LRVIYPDPDSYDGRKVEVTGFVYRDPDLPDNEFVLARFVITCCAADAQPVGLLVKGPNAEQLPNDTWVRVEGTLSTETPN 197

                          90
                  ....*....|....*...
gi 753749140  227 DEsnvehKIPSIKIEKLE 244
Cdd:TIGR03943 198 GR-----RIPVIQVTSVE 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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