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Conserved domains on  [gi|753534355]
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Chain N, Photosystem I-N subunit

Protein Classification

PLN00054 family protein( domain architecture ID 10010600)

PLN00054 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00054 PLN00054
photosystem I reaction center subunit N; Provisional
 2-85 1.53e-58

photosystem I reaction center subunit N; Provisional


:

Pssm-ID: 215042  Cd Length: 139  Bit Score: 175.38  E-value: 1.53e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753534355   2 VFDAYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKFKCGSNV 81
Cdd:PLN00054  55 VISDLLAKSKANKELNDKKRLATSGANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDLALECEGKDKKKCGSKV 134


                 ....
gi 753534355  82 FWKW 85
Cdd:PLN00054 135 FWKW 138
 
Name Accession Description Interval E-value
PLN00054 PLN00054
photosystem I reaction center subunit N; Provisional
 2-85 1.53e-58

photosystem I reaction center subunit N; Provisional


Pssm-ID: 215042  Cd Length: 139  Bit Score: 175.38  E-value: 1.53e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753534355   2 VFDAYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKFKCGSNV 81
Cdd:PLN00054  55 VISDLLAKSKANKELNDKKRLATSGANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDLALECEGKDKKKCGSKV 134


                 ....
gi 753534355  82 FWKW 85
Cdd:PLN00054 135 FWKW 138
PsaN pfam05479
Photosystem I reaction centre subunit N (PSAN or PSI-N); This family contains several ...
 1-85 4.22e-57

Photosystem I reaction centre subunit N (PSAN or PSI-N); This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localized in the thylakoid lumen. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.


Pssm-ID: 398889  Cd Length: 132  Bit Score: 171.60  E-value: 4.22e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753534355    1 SVFDAYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKFKCGSN 80
Cdd:pfam05479  48 GVIDDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKKKCGSN 127


                  ....*
gi 753534355   81 VFWKW 85
Cdd:pfam05479 128 VFWKW 132
 
Name Accession Description Interval E-value
PLN00054 PLN00054
photosystem I reaction center subunit N; Provisional
 2-85 1.53e-58

photosystem I reaction center subunit N; Provisional


Pssm-ID: 215042  Cd Length: 139  Bit Score: 175.38  E-value: 1.53e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753534355   2 VFDAYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKFKCGSNV 81
Cdd:PLN00054  55 VISDLLAKSKANKELNDKKRLATSGANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDLALECEGKDKKKCGSKV 134


                 ....
gi 753534355  82 FWKW 85
Cdd:PLN00054 135 FWKW 138
PsaN pfam05479
Photosystem I reaction centre subunit N (PSAN or PSI-N); This family contains several ...
 1-85 4.22e-57

Photosystem I reaction centre subunit N (PSAN or PSI-N); This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localized in the thylakoid lumen. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.


Pssm-ID: 398889  Cd Length: 132  Bit Score: 171.60  E-value: 4.22e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753534355    1 SVFDAYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKFKCGSN 80
Cdd:pfam05479  48 GVIDDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKKKCGSN 127


                  ....*
gi 753534355   81 VFWKW 85
Cdd:pfam05479 128 VFWKW 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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