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Conserved domains on  [gi|7524706|ref|NP_042460|]
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photosystem I assembly protein Ycf3 (chloroplast) [Pinus thunbergii]

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11414006)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 7.44e-134

photosystem I assembly protein Ycf3


:

Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 370.49  E-value: 7.44e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706    81 VHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 7524706   161 LKITGRFG 168
Cdd:CHL00033 161 LKITGRFE 168
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 7.44e-134

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 370.49  E-value: 7.44e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706    81 VHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 7524706   161 LKITGRFG 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-167 6.92e-107

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 302.41  E-value: 6.92e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706    1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGL 80
Cdd:COG5713   1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   81 VHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEAQNW 160
Cdd:COG5713  81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                ....*..
gi 7524706  161 LKITGRF 167
Cdd:COG5713 161 LKTTGRS 167
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-153 7.13e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 7.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     19 ADILLRIIPMAPgekeaFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILyniGLVHTSNGEHTKALEYYFQA 98
Cdd:TIGR02917 250 ADALLKKAPNSP-----LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA---GASEYQLGNLEQAYQYLNQI 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7524706     99 LERNPSLPQALNNTALICHYRGE--QAIRQ------GDPETAEAW------------FDQAAEYWEQAIALAPGN 153
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRvdEAIATlspalgLDPDDPAALsllgeaylalgdFEKAAEYLAKATELDPEN 396
TPR_1 pfam00515
Tetratricopeptide repeat;
72-104 3.06e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 3.06e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 7524706     72 SYILYNIGLVHTSNGEHTKALEYYFQALERNPS 104
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-104 1.70e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.70e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 7524706      74 ILYNIGLVHTSNGEHTKALEYYFQALERNPS 104
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 7.44e-134

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 370.49  E-value: 7.44e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706    81 VHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 7524706   161 LKITGRFG 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-167 6.92e-107

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 302.41  E-value: 6.92e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706    1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGL 80
Cdd:COG5713   1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   81 VHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEAQNW 160
Cdd:COG5713  81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                ....*..
gi 7524706  161 LKITGRF 167
Cdd:COG5713 161 LKTTGRS 167
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-166 2.44e-106

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 301.21  E-value: 2.44e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGL 80
Cdd:PRK02603   1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706    81 VHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEAQNW 160
Cdd:PRK02603  81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160


                 ....*.
gi 7524706   161 LKITGR 166
Cdd:PRK02603 161 LKTTGR 166
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-161 3.10e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 3.10e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   19 ADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNI----GLVHTSNGEHTKALEY 94
Cdd:COG3914  21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALlelaALLLQALGRYEEALAL 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   95 YFQALERNPSLPQALNNTALICHYRG---------EQAIRQgDPETAEAW------------FDQAAEYWEQAIALAPgN 153
Cdd:COG3914 101 YRRALALNPDNAEALFNLGNLLLALGrleealaalRRALAL-NPDFAEAYlnlgealrrlgrLEEAIAALRRALELDP-D 178


                ....*...
gi 7524706  154 YIEAQNWL 161
Cdd:COG3914 179 NAEALNNL 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-161 5.40e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 5.40e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   19 ADILLRIIPMAPGEKEAftYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDrsyILYNIGLVHTSNGEHTKALEYYFQA 98
Cdd:COG3914  98 LALYRRALALNPDNAEA--LFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRA 172

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7524706   99 LERNPSLPQALNNTALICHYRGEqairqgdpetaeawFDQAAEYWEQAIALAPGNYIEAQNWL 161
Cdd:COG3914 173 LELDPDNAEALNNLGNALQDLGR--------------LEEAIAAYRRALELDPDNADAHSNLL 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-153 7.45e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 7.45e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDrsyILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNT 112
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7524706  113 ALICHYRG--EQAIR------QGDPETAEAW------------FDQAAEYWEQAIALAPGN 153
Cdd:COG0457  83 GLALQALGryEEALEdydkalELDPDDAEALynlglallelgrYDEAIEAYERALELDPDD 143
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
19-142 8.55e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 8.55e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   19 ADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLetDPyDRSYILYNIGLVHTSNGEHTKALEYYFQA 98
Cdd:COG4785  57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--DP-DLAEAYNNRGLAYLLLGDYDAALEDFDRA 133

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 7524706   99 LERNPSLPQALNNTALICHYRgeqairqGDPETAEAWFDQAAEY 142
Cdd:COG4785 134 LELDPDYAYAYLNRGIALYYL-------GRYELAIADLEKALEL 170
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-153 6.58e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 6.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   42 GMSAQSEGEYAEALQNYYEAMRLetDPyDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALnntalicHYRGE 121
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRL--DP-DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL-------YLLGL 93

                        90       100       110
                ....*....|....*....|....*....|..
gi 7524706  122 QAIRQGDpetaeawFDQAAEYWEQAIALAPGN 153
Cdd:COG4235  94 AAFQQGD-------YAEAIAAWQKLLALLPAD 118
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-161 1.80e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.93  E-value: 1.80e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLetDPYDrSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNtal 114
Cdd:COG0457  76 AEALNNLGLALQALGRYEEALEDYDKALEL--DPDD-AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN--- 149

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 7524706  115 ichyRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEAQNWL 161
Cdd:COG0457 150 ----LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-153 5.34e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 5.34e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   20 DILLRIIPMAPGEKEAftYYRDGMSAQSEGEYAEALQNYYEAmrLETDPyDRSYILYNIGLVHTSNGEHTKALEYYFQAL 99
Cdd:COG2956  29 DLLEEALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKL--LERDP-DRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7524706  100 ERNPSLPQALNNTALICHYRG--EQAIR------QGDPETAEAW------------FDQAAEYWEQAIALAPGN 153
Cdd:COG2956 104 ELDPDDAEALRLLAEIYEQEGdwEKAIEvlerllKLGPENAHAYcelaelyleqgdYDEAIEALEKALKLDPDC 177
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 19-141 6.79e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.19  E-value: 6.79e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   19 ADILLRIIPMAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLetDPYDrSYILYNIGLVHTSNGEHTKALEYYFQA 98
Cdd:COG5010  38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--DPNN-PELYYNLALLYSRSGDKDEAKEYYEKA 114

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 7524706   99 LERNPSLPQALNNTALIchyrgeqAIRQGDPETAEAWFDQAAE 141
Cdd:COG5010 115 LALSPDNPNAYSNLAAL-------LLSLGQDDEAKAALQRALG 150
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
45-154 2.23e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 2.23e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   45 AQSEGEYAEALQNYYEAMRLetDPyDRSYILYNIGLVHTSNGEHTKALEyYFQALERNPSLPQALNNTALICHYRGEqai 124
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALEL--DP-DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD--- 74

                        90       100       110
                ....*....|....*....|....*....|
gi 7524706  125 rqgdpetaeawFDQAAEYWEQAIALAPGNY 154
Cdd:COG3063  75 -----------YDEALAYLERALELDPSAL 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-153 7.10e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 7.10e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   21 ILLRIIPMAPGEKEAFTYYrdGMSAQSEGEYAEALQNYYEAMRLetDPyDRSYILYNIGLVHTSNGEHTKALEYYFQALE 100
Cdd:COG4783  26 LLEKALELDPDNPEAFALL--GEILLQLGDLDEAIVLLHEALEL--DP-DEPEARLNLGLALLKAGDYDEALALLEKALK 100

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 7524706  101 RNPSLPQALNNTALICHYRGEqairqgdpetaeawFDQAAEYWEQAIALAPGN 153
Cdd:COG4783 101 LDPEHPEAYLRLARAYRALGR--------------PDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-153 7.13e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 7.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     19 ADILLRIIPMAPgekeaFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILyniGLVHTSNGEHTKALEYYFQA 98
Cdd:TIGR02917 250 ADALLKKAPNSP-----LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA---GASEYQLGNLEQAYQYLNQI 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7524706     99 LERNPSLPQALNNTALICHYRGE--QAIRQ------GDPETAEAW------------FDQAAEYWEQAIALAPGN 153
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRvdEAIATlspalgLDPDDPAALsllgeaylalgdFEKAAEYLAKATELDPEN 396
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-153 8.08e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.22  E-value: 8.08e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   28 MAPGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPY----DRSYILYNIGLVHTSNGEHTKALEYYFQALERNP 103
Cdd:COG4785  25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP 104

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 7524706  104 SLPQALNNtalichyRGEQAIRQGDpetaeawFDQAAEYWEQAIALAPGN 153
Cdd:COG4785 105 DLAEAYNN-------RGLAYLLLGD-------YDAALEDFDRALELDPDY 140
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 35-153 1.70e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.70e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   35 AFTYYRDGMSAQSEGEYAEALQNYYEAmrLETDPYDrSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTAL 114
Cdd:COG4783   4 AEALYALAQALLLAGDYDEAEALLEKA--LELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 7524706  115 IchyrgeqAIRQGDpetaeawFDQAAEYWEQAIALAPGN 153
Cdd:COG4783  81 A-------LLKAGD-------YDEALALLEKALKLDPEH 105
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-141 1.97e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 1.97e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   20 DILLRIIPMAPgeKEAFTYYRDGMSAQSEGEYAEALQNYYEAmrLETDPyDRSYILYNIGLVHTSNGEHTKALEYYFQAL 99
Cdd:COG2956 131 EVLERLLKLGP--ENAHAYCELAELYLEQGDYDEAIEALEKA--LKLDP-DCARALLLLAELYLEQGDYEEAIAALERAL 205

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 7524706  100 ERNPSLPQALNNTALIchyrgeqAIRQGDPETAEAWFDQAAE 141
Cdd:COG2956 206 EQDPDYLPALPRLAEL-------YEKLGDPEEALELLRKALE 240
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-151 4.52e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 4.52e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   20 DILLRIIPMAPGEKEAftYYRDGMSAQSEGEYAEALQnYYEamRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQAL 99
Cdd:COG2956  97 ELLEKLLELDPDDAEA--LRLLAEIYEQEGDWEKAIE-VLE--RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 7524706  100 ERNPSLPQALNNTALIchyrgeqAIRQGDPEtaeawfdQAAEYWEQAIALAP 151
Cdd:COG2956 172 KLDPDCARALLLLAEL-------YLEQGDYE-------EAIAALERALEQDP 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-154 5.16e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 5.16e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   35 AFTYYRDGMSAQSEGEYAEALQNYYEAmrLETDPyDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTAL 114
Cdd:COG2956   8 ALGWYFKGLNYLLNGQPDKAIDLLEEA--LELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 7524706  115 ICHYRGEqairqgdpetaeawFDQAAEYWEQAIALAPGNY 154
Cdd:COG2956  85 DYLKAGL--------------LDRAEELLEKLLELDPDDA 110
TPR_1 pfam00515
Tetratricopeptide repeat;
72-104 3.06e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 3.06e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 7524706     72 SYILYNIGLVHTSNGEHTKALEYYFQALERNPS 104
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-108 5.34e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 5.34e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7524706   38 YYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQA 108
Cdd:COG1729  33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-104 1.70e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.70e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 7524706      74 ILYNIGLVHTSNGEHTKALEYYFQALERNPS 104
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 45-159 2.78e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 2.78e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   45 AQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEqai 124
Cdd:COG5010  27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD--- 103

                        90       100       110
                ....*....|....*....|....*....|....*
gi 7524706  125 rqgdpetaeawFDQAAEYWEQAIALAPGNYIEAQN 159
Cdd:COG5010 104 -----------KDEAKEYYEKALALSPDNPNAYSN 127
TPR_12 pfam13424
Tetratricopeptide repeat;
35-104 3.08e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 3.08e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7524706     35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----ETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPS 104
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 19-158 3.70e-04

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 39.90  E-value: 3.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706    19 ADILLRIIPMAPGEKEAFTYYRDGMSAQSEgEYAEALQNYYEAMRLETDPYDRSYILYNIGLVhtsnGEHTKALeyyfQA 98
Cdd:PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRDT-LPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV----EDYATAL----AA 531

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7524706    99 LERNPslPQALNNTALICHYRGEQAirQGDPETAEAWFDQAAEY----WEQAIALAPGNYIEAQ 158
Cdd:PRK09782 532 WQKIS--LHDMSNEDLLAAANTAQA--AGNGAARDRWLQQAEQRglgdNALYWWLHAQRYIPGQ 591
TPR_12 pfam13424
Tetratricopeptide repeat;
70-145 4.68e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 4.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     70 DRSYILYNIGLVHTSNGEHTKALEYYFQALER--------NPSLPQALNNTALICHyrgeqaiRQGDPETAEAWFDQAAE 141
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYL-------ELGRYEEALELLERALA 73


                  ....
gi 7524706    142 YWEQ 145
Cdd:pfam13424  74 LAEK 77
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-153 6.10e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.20  E-value: 6.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAmrLETDP-YDRSYIlyNIGLVHTSNGEHTKALEYYFQALERNPSLPQal 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNSEDPD-- 400

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 7524706    110 nntalICHYRGEQAIRQGDpetaeawFDQAAEYWEQAIALAPGN 153
Cdd:TIGR00990 401 -----IYYHRAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 48-141 9.98e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 9.98e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   48 EGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNntALIchYRGEQAIRQG 127
Cdd:COG1729   6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD--ALL--KLGLSYLELG 81

                        90
                ....*....|....
gi 7524706  128 DPETAEAWFDQAAE 141
Cdd:COG1729  82 DYDKARATLEELIK 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-153 1.37e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.14  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     33 KEAFTYYRDGMSAQSE-------GEYAEALQNYYEAMR-----LETDPYDrSYILYNIGLVHTSNGEHTKALEYYFQALE 100
Cdd:TIGR02917 720 PAAIQAYRKALKRAPSsqnaiklHRALLASGNTAEAVKtleawLKTHPND-AVLRTALAELYLAQKDYDKAIKHYQTVVK 798

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 7524706    101 RNPSLPQALNNTALIchyrgeqAIRQGDPEtaeawfdqAAEYWEQAIALAPGN 153
Cdd:TIGR02917 799 KAPDNAVVLNNLAWL-------YLELKDPR--------ALEYAERALKLAPNI 836
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 4.10e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 34.23  E-value: 4.10e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7524706     42 GMSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-157 4.60e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 36.52  E-value: 4.60e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLETDPYDrsyILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTAL 114
Cdd:COG0457 110 AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD---ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 7524706  115 ICHYRGEQAIRQGDPETAEAWFDQAAEYWEQAIALAPGNYIEA 157
Cdd:COG0457 187 ALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
22-107 5.94e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 34.38  E-value: 5.94e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   22 LLRIIPMAPGEKEAFTYYrdGMSAQSEGEYAEALQnYYEAMRLetDPyDRSYILYNIGLVHTSNGEHTKALEYYFQALER 101
Cdd:COG3063  15 YEKALELDPDNADALNNL--GLLLLEQGRYDEAIA-LEKALKL--DP-NNAEALLNLAELLLELGDYDEALAYLERALEL 88


                ....*.
gi 7524706  102 NPSLPQ 107
Cdd:COG3063  89 DPSALR 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-162 7.22e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 36.21  E-value: 7.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706     42 GMSAQSEGEYAEALQNYYEAMRLETDPYdrsYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTAlichyrgE 121
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFF---PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA-------G 541

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 7524706    122 QAIRQGDPETAEAWFDQAAEYWEQAI--ALAPGNYIEAQNWLK 162
Cdd:TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIepALALAQYYLGKGQLK 584
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-139 9.02e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 35.28  E-value: 9.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7524706   35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLetDPyDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTAL 114
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALEL--DP-DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYL 183

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 7524706  115 ICH-------------YRGEQAIRQGDPETAEAWFDQA 139
Cdd:COG4785 184 AERkldpekalallleDWATAYLLQGDTEEARELFKLA 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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