NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|751769455|gb|AJG00916|]
View 

AC4 [Sweet potato leaf curl Shanghai virus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Gemini_C4 super family cl03236
Geminivirus C4 protein; This family consists of the N terminal region of geminivirus C4 or AC4 ...
 1-84 2.25e-11

Geminivirus C4 protein; This family consists of the N terminal region of geminivirus C4 or AC4 proteins. In Tomato yellow leaf curl geminivirus (TYLCV) the C4 protein is necessary for efficient spreading of the virus in tomato plants.


The actual alignment was detected with superfamily member pfam01492:

Pssm-ID: 279790  Cd Length: 84  Bit Score: 54.36  E-value: 2.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751769455   1 MGLCTSMPLFNSRVKPSPEIPDISTSCTLIIPPSSTPISRERNPPQMSRHTSRRTEITSTGVNSRSTADLLEEVSRRLMM 80
Cdd:pfam01492  1 MGNLISTRLFNSKVNSSAQIKDCSTWYPQPGQHISIRTFRELNPAPTSKPTSTRTETQSNGDNSRSTADLLEEVSRQLTT 80


                 ....
gi 751769455  81 QQQK 84
Cdd:pfam01492 81 HTQR 84
 
Name Accession Description Interval E-value
Gemini_C4 pfam01492
Geminivirus C4 protein; This family consists of the N terminal region of geminivirus C4 or AC4 ...
 1-84 2.25e-11

Geminivirus C4 protein; This family consists of the N terminal region of geminivirus C4 or AC4 proteins. In Tomato yellow leaf curl geminivirus (TYLCV) the C4 protein is necessary for efficient spreading of the virus in tomato plants.


Pssm-ID: 279790  Cd Length: 84  Bit Score: 54.36  E-value: 2.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751769455   1 MGLCTSMPLFNSRVKPSPEIPDISTSCTLIIPPSSTPISRERNPPQMSRHTSRRTEITSTGVNSRSTADLLEEVSRRLMM 80
Cdd:pfam01492  1 MGNLISTRLFNSKVNSSAQIKDCSTWYPQPGQHISIRTFRELNPAPTSKPTSTRTETQSNGDNSRSTADLLEEVSRQLTT 80


                 ....
gi 751769455  81 QQQK 84
Cdd:pfam01492 81 HTQR 84
 
Name Accession Description Interval E-value
Gemini_C4 pfam01492
Geminivirus C4 protein; This family consists of the N terminal region of geminivirus C4 or AC4 ...
 1-84 2.25e-11

Geminivirus C4 protein; This family consists of the N terminal region of geminivirus C4 or AC4 proteins. In Tomato yellow leaf curl geminivirus (TYLCV) the C4 protein is necessary for efficient spreading of the virus in tomato plants.


Pssm-ID: 279790  Cd Length: 84  Bit Score: 54.36  E-value: 2.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751769455   1 MGLCTSMPLFNSRVKPSPEIPDISTSCTLIIPPSSTPISRERNPPQMSRHTSRRTEITSTGVNSRSTADLLEEVSRRLMM 80
Cdd:pfam01492  1 MGNLISTRLFNSKVNSSAQIKDCSTWYPQPGQHISIRTFRELNPAPTSKPTSTRTETQSNGDNSRSTADLLEEVSRQLTT 80


                 ....
gi 751769455  81 QQQK 84
Cdd:pfam01492 81 HTQR 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH