NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|751249223|gb|AJF43447|]
View 

photosystem I P700 apoprotein A1 (chloroplast) [Araucaria laubenfelsii]

Protein Classification

photosystem I core protein PsaA( domain architecture ID 10000059)

photosystem I core protein PsaA binds P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport

EC:  1.97.1.12
Gene Ontology:  GO:0016168|GO:0016020|GO:0015979|GO:0009522
PubMed:  15573135
SCOP:  3000850
TCDB:  5.B.4

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


:

Pssm-ID: 176996  Cd Length: 750  Bit Score: 1647.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   1 MIIRSPEPEVKIVVERDPIKTSFEKWAKPGHFSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQLAI 80
Cdd:CHL00056   1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  81 ILIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYCTA 160
Cdd:CHL00056  81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 161 IGGLIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPHEF 240
Cdd:CHL00056 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHSLK 320
Cdd:CHL00056 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGFLIV 400
Cdd:CHL00056 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 401 GAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
Cdd:CHL00056 401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 481 AQWIQNTHASAPSLTAPDATASTSLTWGGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056 481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
Cdd:CHL00056 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
Cdd:CHL00056 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720

                        730       740       750
                 ....*....|....*....|....*....|
gi 751249223 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
Cdd:CHL00056 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1647.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   1 MIIRSPEPEVKIVVERDPIKTSFEKWAKPGHFSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQLAI 80
Cdd:CHL00056   1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  81 ILIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYCTA 160
Cdd:CHL00056  81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 161 IGGLIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPHEF 240
Cdd:CHL00056 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHSLK 320
Cdd:CHL00056 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGFLIV 400
Cdd:CHL00056 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 401 GAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
Cdd:CHL00056 401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 481 AQWIQNTHASAPSLTAPDATASTSLTWGGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056 481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
Cdd:CHL00056 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
Cdd:CHL00056 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720

                        730       740       750
                 ....*....|....*....|....*....|
gi 751249223 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
Cdd:CHL00056 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-750 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 1455.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223    1 MIIRSPEPE---VKIVVERDPIKTSFEKWAKPGHFSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQ 77
Cdd:TIGR01335   1 MTISPPEREqktAKILVDRDPVPTSFEKWAKPGHFSRTLAKGPKTTTWIWNLHADAHDFDSHTSDLEDISRKIFSAHFGQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   78 LAIILIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLY 157
Cdd:TIGR01335  81 LSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  158 CTAIGGLIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLP 237
Cdd:TIGR01335 161 VTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLP 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  238 HEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGH 317
Cdd:TIGR01335 241 HEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  318 SLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGF 397
Cdd:TIGR01335 321 SIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  398 LIVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQ 477
Cdd:TIGR01335 401 LIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQ 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  478 PIFAQWIQNTHASAPSLTAPDATASTSLTWgGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARS 557
Cdd:TIGR01335 481 PVFAQWIQNLHTLAPGNTAPNALATTSYAF-GGEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARN 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  558 SRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQS 637
Cdd:TIGR01335 560 SRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSDVWGTVSQNGLVSHITGGNFAQS 639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  638 SITINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 717
Cdd:TIGR01335 640 AITINGWLRDFLWAQASQVIQSYGSSLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 719

                         730       740       750
                  ....*....|....*....|....*....|...
gi 751249223  718 SIVQGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
Cdd:TIGR01335 720 SIIQGRAVGVAHYLLGGIATTWAFFLARIISVG 752
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-750 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 1387.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   1 MIIRSPEPE--VKIVVERDPIKTSFEKWAKPGHFSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQL 78
Cdd:COG5701    1 MTISPPEREekVRVPVDNDPVPTSFEKWGKPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEEISRKIFSAHFGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  79 AIILIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYC 158
Cdd:COG5701   81 AVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYC 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 159 TAIGGLIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPH 238
Cdd:COG5701  161 TAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPH 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 239 EFiLNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHS 318
Cdd:COG5701  241 EF-LNPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHS 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 319 LKEILEAHKGP---FTG-EGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWI 394
Cdd:COG5701  320 MKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWI 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 395 GGFLIVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAI 474
Cdd:COG5701  400 GGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAI 479

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 475 QLQPIFAQWIQNTHASAP-SLTAPDATASTSLTWGGgDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVL 553
Cdd:COG5701  480 QLQPVFAQWIQNLHASAPgTATAPNAGGTVSEAFGG-DVVAVGGKVAMMPIPLGTADFMIHHIHAFTIHVTVLILLKGVL 558

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 554 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGN 633
Cdd:COG5701  559 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSVVIFHFSWKMQSDVWGTVNADGSVNHITGGN 638

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 634 FAQSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 713
Cdd:COG5701  639 FAQSSITINGWLRDFLWAQSSQVINSYGSALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 718

                        730       740       750
                 ....*....|....*....|....*....|....*..
gi 751249223 714 PRALSIVQGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
Cdd:COG5701  719 PRALSITQGRAVGVAHYLLGGIATTWAFFLARLIALG 755
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
32-744 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1274.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   32 FSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLSDPTHIKPS 111
Cdd:pfam00223   1 FSQDLAQGPKTTRWIWNLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  112 AQVVWPIVGQEILNG--DVGGGFRGIQITSGFFQLWRASGITSELQLYCTAIGGLIFAALMLFAGWFHYHKAAPKLAWFQ 189
Cdd:pfam00223  81 AHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  190 DVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPHEFiLNRDLLAQLYPSFAKGLTPFFTLNWSEY 269
Cdd:pfam00223 161 NAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPF-LNPDLMGQLYPSFAAGLGPFFTGNWGAY 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  270 SDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHSLKEILEAHKGP--FTGEGHKGLYEILTTSWH 347
Cdd:pfam00223 240 ADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  348 AQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTQYNNLLDRV 427
Cdd:pfam00223 320 AQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRV 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  428 LRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQ----------NTHASAPSLTAP 497
Cdd:pfam00223 400 LEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAP 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  498 DATASTSLTWGGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPG 577
Cdd:pfam00223 480 NAGAGVSDVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCDGPG 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  578 RGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISdqgvvthITGGNFAQSSITINGWLRDFLWAQASQVI 657
Cdd:pfam00223 560 RGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSDVWGGNV-------ITGGQFAQSSIYINGWLRDFLWAQSSQVI 632

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  658 QSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIVQGRAVGVAHYLLGGIAT 737
Cdd:pfam00223 633 NSYGNSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLIQPRALSIVQGRAVGVAHFLLGGIVT 712


                  ....*..
gi 751249223  738 TWAFFLA 744
Cdd:pfam00223 713 TWAFFIA 719
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1647.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   1 MIIRSPEPEVKIVVERDPIKTSFEKWAKPGHFSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQLAI 80
Cdd:CHL00056   1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  81 ILIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYCTA 160
Cdd:CHL00056  81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 161 IGGLIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPHEF 240
Cdd:CHL00056 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHSLK 320
Cdd:CHL00056 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGFLIV 400
Cdd:CHL00056 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 401 GAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
Cdd:CHL00056 401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 481 AQWIQNTHASAPSLTAPDATASTSLTWGGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056 481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
Cdd:CHL00056 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
Cdd:CHL00056 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720

                        730       740       750
                 ....*....|....*....|....*....|
gi 751249223 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
Cdd:CHL00056 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-750 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 1455.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223    1 MIIRSPEPE---VKIVVERDPIKTSFEKWAKPGHFSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQ 77
Cdd:TIGR01335   1 MTISPPEREqktAKILVDRDPVPTSFEKWAKPGHFSRTLAKGPKTTTWIWNLHADAHDFDSHTSDLEDISRKIFSAHFGQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   78 LAIILIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLY 157
Cdd:TIGR01335  81 LSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  158 CTAIGGLIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLP 237
Cdd:TIGR01335 161 VTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLP 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  238 HEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGH 317
Cdd:TIGR01335 241 HEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  318 SLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGF 397
Cdd:TIGR01335 321 SIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  398 LIVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQ 477
Cdd:TIGR01335 401 LIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQ 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  478 PIFAQWIQNTHASAPSLTAPDATASTSLTWgGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARS 557
Cdd:TIGR01335 481 PVFAQWIQNLHTLAPGNTAPNALATTSYAF-GGEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARN 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  558 SRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQS 637
Cdd:TIGR01335 560 SRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSDVWGTVSQNGLVSHITGGNFAQS 639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  638 SITINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 717
Cdd:TIGR01335 640 AITINGWLRDFLWAQASQVIQSYGSSLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 719

                         730       740       750
                  ....*....|....*....|....*....|...
gi 751249223  718 SIVQGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
Cdd:TIGR01335 720 SIIQGRAVGVAHYLLGGIATTWAFFLARIISVG 752
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-750 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 1387.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   1 MIIRSPEPE--VKIVVERDPIKTSFEKWAKPGHFSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQL 78
Cdd:COG5701    1 MTISPPEREekVRVPVDNDPVPTSFEKWGKPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEEISRKIFSAHFGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  79 AIILIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYC 158
Cdd:COG5701   81 AVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYC 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 159 TAIGGLIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPH 238
Cdd:COG5701  161 TAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPH 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 239 EFiLNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHS 318
Cdd:COG5701  241 EF-LNPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHS 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 319 LKEILEAHKGP---FTG-EGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWI 394
Cdd:COG5701  320 MKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWI 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 395 GGFLIVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAI 474
Cdd:COG5701  400 GGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAI 479

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 475 QLQPIFAQWIQNTHASAP-SLTAPDATASTSLTWGGgDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVL 553
Cdd:COG5701  480 QLQPVFAQWIQNLHASAPgTATAPNAGGTVSEAFGG-DVVAVGGKVAMMPIPLGTADFMIHHIHAFTIHVTVLILLKGVL 558

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 554 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGN 633
Cdd:COG5701  559 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSVVIFHFSWKMQSDVWGTVNADGSVNHITGGN 638

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 634 FAQSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 713
Cdd:COG5701  639 FAQSSITINGWLRDFLWAQSSQVINSYGSALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 718

                        730       740       750
                 ....*....|....*....|....*....|....*..
gi 751249223 714 PRALSIVQGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
Cdd:COG5701  719 PRALSITQGRAVGVAHYLLGGIATTWAFFLARLIALG 755
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
32-744 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1274.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223   32 FSKTLSKGPNTTTWIWNLHADAHDFDSHTDDLEEISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLSDPTHIKPS 111
Cdd:pfam00223   1 FSQDLAQGPKTTRWIWNLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  112 AQVVWPIVGQEILNG--DVGGGFRGIQITSGFFQLWRASGITSELQLYCTAIGGLIFAALMLFAGWFHYHKAAPKLAWFQ 189
Cdd:pfam00223  81 AHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  190 DVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPHEFiLNRDLLAQLYPSFAKGLTPFFTLNWSEY 269
Cdd:pfam00223 161 NAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPF-LNPDLMGQLYPSFAAGLGPFFTGNWGAY 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  270 SDFLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHSLKEILEAHKGP--FTGEGHKGLYEILTTSWH 347
Cdd:pfam00223 240 ADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  348 AQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTQYNNLLDRV 427
Cdd:pfam00223 320 AQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRV 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  428 LRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQ----------NTHASAPSLTAP 497
Cdd:pfam00223 400 LEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAP 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  498 DATASTSLTWGGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPG 577
Cdd:pfam00223 480 NAGAGVSDVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCDGPG 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  578 RGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISdqgvvthITGGNFAQSSITINGWLRDFLWAQASQVI 657
Cdd:pfam00223 560 RGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSDVWGGNV-------ITGGQFAQSSIYINGWLRDFLWAQSSQVI 632

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  658 QSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIVQGRAVGVAHYLLGGIAT 737
Cdd:pfam00223 633 NSYGNSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLIQPRALSIVQGRAVGVAHFLLGGIVT 712


                  ....*..
gi 751249223  738 TWAFFLA 744
Cdd:pfam00223 713 TWAFFIA 719
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
 32-744 0e+00

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 672.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  32 FSKTLSKGPnTTTWIWNLHADAHDFDSHTDDLEE-ISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLSDPTHIKP 110
Cdd:CHL00054   8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 111 SAQVVW-PIVGQEILNGDVGGGFRG-IQI-TSGFFQLWRASGITSELQLYCTAIGGLIFAALMLFAGWFHYH-KAAPKLA 186
Cdd:CHL00054  87 IAHAIWdPHFGQPAVEAFTRGGALGpVNIaYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQpKWKPSVS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 187 WFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPHefilnrdllaqlypsfAKGLTPFFTLNW 266
Cdd:CHL00054 167 WFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPH----------------PQGLGPLFTGQW 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 267 SEYSD------------------FLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHSLKEILEAHKG 328
Cdd:CHL00054 231 NLYAQnpdssshlfgtsqgagtaILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIP 310

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 329 P--FTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGFLIVGAAAHA 406
Cdd:CHL00054 311 PggRLGRGHKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHG 390

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 407 AIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMfsdtaIQLQPIFAQWIQN 486
Cdd:CHL00054 391 AIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQS 465

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 487 THASA--------PSLTAPDATASTSLtWGGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSS 558
Cdd:CHL00054 466 AHGKTsygfdvllSSTNSPAFNAGRSI-WLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGS 544

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 559 RLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSdVWgsisdQGVVthitgGNFAQSS 638
Cdd:CHL00054 545 KLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT-LW-----QGNV-----SQFNESS 613

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 639 ITINGWLRDFLWAQASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ- 713
Cdd:CHL00054 614 TYLMGWLRDYLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRw 693

                        730       740       750
                 ....*....|....*....|....*....|....
gi 751249223 714 ---PRALSIVQGRAVGVAHYLLGGIATTWAFFLA 744
Cdd:CHL00054 694 rdkPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 727
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
 32-744 0e+00

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 642.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223  32 FSKTLSKGPnTTTWIWNLHADAHDFDSHTDDLEE-ISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLSDPTHIKP 110
Cdd:COG5702    8 FSQDLAQDP-TTRRIWYGIATAHDFESHDGMTEEnLYQKIFATHFGHLAIIFLWSSGNLFHVAWQGNFEQWIQDPLNVRP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 111 SAQVVW-PIVGQEILNG-DVGGGFRGIQIT-SGFFQLWRASGITSELQLYCTAIGGLIFAALMLFAGWFHYH-KAAPKLA 186
Cdd:COG5702   87 IAHAIWdPHFGKPAIEAfTQAGASNPVNICySGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQpKFRPSLA 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 187 WFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQLLDAGVDPKEIPLPHefilnrdllaqlypsfAKGLTPFFTLNW 266
Cdd:COG5702  167 WFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLSTLPH----------------PAGLAPFFTGNW 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 267 SEYSD------------------FLTFRGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHMYRTNWSIGHSLKEILEAHKG 328
Cdd:COG5702  231 GVYAQnpdtaghafgtsqgagtaILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAHQG 310

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 329 P------FTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYSMPPYPYLAIDYGTQLSLFTHHMWIGGFLIVGA 402
Cdd:COG5702  311 PgrsgffKTGLGHKGLYDTINNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMIGA 390

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 403 AAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMfsdtaIQLQPIFAQ 482
Cdd:COG5702  391 FAHGAIFFVRDYDPEANKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQ-----ILIEPVFAQ 465

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 483 WIQNTHA----------SAPSLTAPDATASTSLTWGGGDLVAVGNKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGV 552
Cdd:COG5702  466 FIQAAHGkvlygidtllSNPDSVASTAWPNYGNVWLPGWLEAVNNGANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGA 545

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 553 LFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSdVWGSISDQgvvthitgg 632
Cdd:COG5702  546 LDARGSKLMPDKKDFGYAFPCDGPGRGGTCDISAWDSFYLATFWMLNTIGWVTFYWHWKHLS-IWSGNVAQ--------- 615

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751249223 633 nFAQSSITINGWLRDFLWAQASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKV 708
Cdd:COG5702  616 -FNESSTYLMGWFRDYLWANSAQLINGYSpfgtNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPL 694

                        730       740       750       760
                 ....*....|....*....|....*....|....*....|
gi 751249223 709 APAIQPR----ALSIVQGRAVGVAHYLLGGIATTWAFFLA 744
Cdd:COG5702  695 ANLVRWKdkpvALSIVQARLVGLTHFTVGYIVTYAAFLIA 734
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH