|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-139 |
6.48e-94 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 275.12 E-value: 6.48e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00156 139 LLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKD 218
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00156 219 LVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-138 |
1.54e-43 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 146.86 E-value: 1.54e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEK----IPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPY 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 751143208 76 F*FKDLItiILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:COG1290 240 YTVKDGF--GFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-139 |
1.76e-29 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 104.26 E-value: 1.76e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 59 NPLGINSNTEKIPFHPYF*FKDLITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
.
gi 751143208 139 K 139
Cdd:cd00290 81 K 81
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-105 |
4.07e-25 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 93.85 E-value: 4.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHF-VLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FK 79
Cdd:pfam13631 64 ILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVK 143
|
90 100
....*....|....*....|....*.
gi 751143208 80 DLITIILMMSLLIMLCLINPYLLGDP 105
Cdd:pfam13631 144 MLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
82-139 |
3.60e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 46.71 E-value: 3.60e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143208 82 ITIILMMSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:TIGR01156 42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-139 |
6.48e-94 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 275.12 E-value: 6.48e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00156 139 LLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKD 218
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00156 219 LVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-139 |
1.30e-82 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 246.75 E-value: 1.30e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00191 146 LLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKD 225
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00191 226 ILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNK 284
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-139 |
6.43e-82 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 245.20 E-value: 6.43e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00145 150 LLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00145 230 LVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-139 |
3.58e-81 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 243.27 E-value: 3.58e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00119 150 LLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00119 230 LLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-139 |
1.72e-80 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 241.87 E-value: 1.72e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00131 149 LLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKD 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00131 229 LLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-139 |
2.28e-80 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 241.51 E-value: 2.28e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00074 150 LLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00074 230 LLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-139 |
1.53e-78 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 236.84 E-value: 1.53e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00100 149 LLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKD 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00100 229 ILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-139 |
9.06e-77 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 232.26 E-value: 9.06e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00016 150 LLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00016 230 IVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNK 288
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-139 |
7.94e-73 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 222.27 E-value: 7.94e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00034 149 LVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKD 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00034 229 LVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-139 |
1.27e-63 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 198.61 E-value: 1.27e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00224 150 LFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00224 230 ALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNK 288
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-139 |
1.02e-62 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 196.08 E-value: 1.02e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00022 148 LLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKD 227
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00022 228 WYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-139 |
1.34e-62 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 196.08 E-value: 1.34e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00053 150 LLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKD 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00053 230 LYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-139 |
4.92e-51 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 165.50 E-value: 4.92e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00086 138 LLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD 217
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 81 LITIILMMsLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00086 218 AYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNK 275
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-139 |
2.52e-44 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 148.93 E-value: 2.52e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FKD 80
Cdd:MTH00033 146 LVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKD 225
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 751143208 81 LITIILMMSLLIMLClINPY---LLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00033 226 ILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-138 |
1.54e-43 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 146.86 E-value: 1.54e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEK----IPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPY 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 751143208 76 F*FKDLItiILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:COG1290 240 YTVKDGF--GFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-139 |
4.80e-36 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 126.64 E-value: 4.80e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSNNPLGI-NSNTEKIPFHPYF*FK 79
Cdd:MTH00046 140 IVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVK 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 80 DLITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:MTH00046 220 DLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSK 279
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-139 |
1.76e-29 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 104.26 E-value: 1.76e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 59 NPLGINSNTEKIPFHPYF*FKDLITIILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
.
gi 751143208 139 K 139
Cdd:cd00290 81 K 81
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-105 |
4.07e-25 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 93.85 E-value: 4.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHF-VLPFLIA*FAAIHLFFLHQTGSNNPLGINSNTEKIPFHPYF*FK 79
Cdd:pfam13631 64 ILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVK 143
|
90 100
....*....|....*....|....*.
gi 751143208 80 DLITIILMMSLLIMLCLINPYLLGDP 105
Cdd:pfam13631 144 MLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-58 |
1.68e-19 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 80.10 E-value: 1.68e-19
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTGSN 58
Cdd:cd00284 143 LFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-56 |
2.33e-18 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 76.65 E-value: 2.33e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 751143208 1 LLSAIPYMGTELVQWVWGGFAVDNATLNRFFTFHFVLPFLIA*FAAIHLFFLHQTG 56
Cdd:pfam00033 134 LLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
110-139 |
5.08e-15 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 65.96 E-value: 5.08e-15
10 20 30
....*....|....*....|....*....|
gi 751143208 110 PANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSK 30
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
82-139 |
1.58e-08 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 50.18 E-value: 1.58e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143208 82 ITIILMMSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:COG5679 43 VVILGTIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNK 95
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
82-139 |
1.45e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 47.69 E-value: 1.45e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143208 82 ITIILMMSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:CHL00058 42 VVILGTIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNK 94
|
|
| petB |
CHL00070 |
cytochrome b6 |
4-61 |
2.95e-07 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 47.41 E-value: 2.95e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 751143208 4 AIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIA*FAAIHLFFLHQTGSNNPL 61
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
82-139 |
3.60e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 46.71 E-value: 3.60e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 751143208 82 ITIILMMSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 139
Cdd:TIGR01156 42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-61 |
8.00e-07 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 46.24 E-value: 8.00e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 751143208 3 SAIPYMGTELVQWVWGGFAVDNATLNRFFTFH-FVLPFLIA*FAAIHLFFLHQTGSNNPL 61
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
|