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Conserved domains on  [gi|749111682|ref|YP_009115658|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Ravinia pernix]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 4.97e-40

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 133.01  E-value: 4.97e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682   3 QWILLTLLFIFNFIFLNMKHPLAMGLTLLIQTTLICLTSGLMTKTFWFSYILFLVFLGGMLVLFIYVTSLASNEMFSFSI 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682  83 KLMIMTMTIFMLSIIILFFIDKNIilqyanmeiksIFNLDSYIMENSLSLNKLYNYPTNLLTIMLMNYLLITLIAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMS-----------NFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 749111682 163 KLFKGPLRPMF 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 4.97e-40

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 133.01  E-value: 4.97e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682   3 QWILLTLLFIFNFIFLNMKHPLAMGLTLLIQTTLICLTSGLMTKTFWFSYILFLVFLGGMLVLFIYVTSLASNEMFSFSI 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682  83 KLMIMTMTIFMLSIIILFFIDKNIilqyanmeiksIFNLDSYIMENSLSLNKLYNYPTNLLTIMLMNYLLITLIAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMS-----------NFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 749111682 163 KLFKGPLRPMF 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 4.97e-40

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 133.01  E-value: 4.97e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682   3 QWILLTLLFIFNFIFLNMKHPLAMGLTLLIQTTLICLTSGLMTKTFWFSYILFLVFLGGMLVLFIYVTSLASNEMFSFSI 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682  83 KLMIMTMTIFMLSIIILFFIDKNIilqyanmeiksIFNLDSYIMENSLSLNKLYNYPTNLLTIMLMNYLLITLIAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMS-----------NFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 749111682 163 KLFKGPLRPMF 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 4.12e-13

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 63.37  E-value: 4.12e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682   1 MMQWILLTLLFIFNFIFLNMKHPLAMGLTLLIQTTLICLTSGlMTKTFWFSYILFLVFLGGMLVLFIYVTSLASNEMFSF 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682  81 SIKLMIMTMTIFMLSIIILFFidkniiLQYANMEIKSIFNLDSYIMENSLSLNKLYNYPTNLLTIMLMNYLLITLIAVVK 160
Cdd:MTH00152  80 NFKFVFFSLTLFGFLGLFFFF------LYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVK 153

                        170
                 ....*....|
gi 749111682 161 ITKLFKGPLR 170
Cdd:MTH00152 154 ICYYEEGSLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-173 2.23e-12

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 61.56  E-value: 2.23e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682   1 MMQWILLTLLFIFNFIFLNMKHPLAMGLTLLIQTTLICLTSGLMTkTFWFSYILFLVFLGGMLVLFIYVTSLASNEMFSF 80
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMES-NSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111682  81 SIKLMIMTMTIFMLSIIILFFIDKNIILQYANmeiksifnldsyIMENSLSLNKLYNYPTNLLTIMLMNYLLITLIAVVK 160
Cdd:MTH00212  80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPML------------NLKLELNVSKILSNNNIPILLFLGLILLIALLMVVK 147

                        170
                 ....*....|...
gi 749111682 161 ITKLFKGPLRPMF 173
Cdd:MTH00212 148 ICQYYKGPLRPFL 160
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 51-74 1.68e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 37.43  E-value: 1.68e-03
                         10        20
                 ....*....|....*....|....
gi 749111682  51 SYILFLVFLGGMLVLFIYVTSLAS 74
Cdd:MTH00138  52 SLVLFLIYLGGMLVVFAYSAALAA 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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