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Conserved domains on  [gi|749111678|ref|YP_009115652|]
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ATP synthase F0 subunit 6 (mitochondrion) [Ravinia pernix]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009593)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 6.00e-98

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214441  Cd Length: 223  Bit Score: 284.37  E-value: 6.00e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDPSSSiFNLSLNWLSTFLGILMIPSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMGaNGSTFLFVSLFSM 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKN-KGSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  81 ILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAV 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 749111678 161 RLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSEVN 225
Cdd:MTH00157 159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 6.00e-98

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 284.37  E-value: 6.00e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDPSSSiFNLSLNWLSTFLGILMIPSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMGaNGSTFLFVSLFSM 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKN-KGSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  81 ILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAV 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 749111678 161 RLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSEVN 225
Cdd:MTH00157 159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-225 4.41e-42

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 141.96  E-value: 4.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678    5 LFSVFDPSS-SIFNLSLNWLSTFLGILMI----PSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMGANgSTFLFVSLFS 79
Cdd:TIGR01131   1 LFSQFDISPiTLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGK-FFPLIFTLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   80 MILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLA 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 749111678  160 VRLTANMIAGHLLLTLLGNTGPSMSTI-LLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSEVN 225
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLSGLLFSLMSSaIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 67-222 1.16e-32

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 115.57  E-value: 1.16e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  67 ANGSTFLFVSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCI 146
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 749111678 147 ETISNVIRPGTLAVRLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSS 222
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
22-222 1.99e-19

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 82.92  E-value: 1.99e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   22 WLSTFLGILMIPSAYW----LMPSRYHIFWNNILLTLHKEFKTLLGPMGANGSTFLFVSLFSMILFNNFMGLF---PYIF 94
Cdd:pfam00119   5 LIVALILLLFLLLATRktkkLVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   95 TSTSHLTLTLTLALPLWLCFMLFG-WINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLL 173
Cdd:pfam00119  85 TVTADINVTLALALIVFLLVHYYGiKKHGLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLL 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 749111678  174 TLLGNTGPSMSTILLSVLIIT---QIALLVLESAVAMIQSYVFAVLSTLYSS 222
Cdd:pfam00119 165 LLLAGLIFALLSAGFLLGVIPpllGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 63-220 6.52e-14

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 67.79  E-value: 6.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  63 GPMGANGSTF--LFVSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFG-WINNTQHMFAHLVPQGTPAvL 139
Cdd:COG0356   48 DTIGKKGRKFapLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGiKKKGLGGYLKHLFFPPFPW-L 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 140 MPFMVCIETISNVIRPGTLAVRLTANMIAGHLLLTLLGNTGPSMSTILLSVLIitQIALLVLESAVAMIQSYVFAVLSTL 219
Cdd:COG0356  127 APLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLLLGVLSLLL--PVAWTAFELLVGFLQAYIFTMLTAV 204


                 .
gi 749111678 220 Y 220
Cdd:COG0356  205 Y 205
 
Name Accession Description Interval E-value
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 6.00e-98

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 284.37  E-value: 6.00e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDPSSSiFNLSLNWLSTFLGILMIPSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMGaNGSTFLFVSLFSM 80
Cdd:MTH00157   1 MMTNLFSIFDPSTS-FNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKN-KGSTLIFISLFSF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  81 ILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAV 160
Cdd:MTH00157  79 ILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 749111678 161 RLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSEVN 225
Cdd:MTH00157 159 RLAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSEVN 223
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-224 2.18e-43

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 145.56  E-value: 2.18e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDPSSSIF--NLSLNWLSTFLGILMIPSAYWLMPSRYHIFWNnILLTLHKEFKTLLGPMGANGSTFLFVSLF 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIfsMISLSWITLLLFLLLMPSSVWFCPSKLQVFML-MFSTFLPEMILRSNGSYILGSASIIISLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  79 SMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTL 158
Cdd:MTH00176  80 ILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 749111678 159 AVRLTANMIAGHLLLTLLGNTGPS---MSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSEV 224
Cdd:MTH00176 160 AVRLAANLSAGHLLLGLLGAAMWGllpVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-225 4.41e-42

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 141.96  E-value: 4.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678    5 LFSVFDPSS-SIFNLSLNWLSTFLGILMI----PSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMGANgSTFLFVSLFS 79
Cdd:TIGR01131   1 LFSQFDISPiTLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGK-FFPLIFTLFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   80 MILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLA 159
Cdd:TIGR01131  80 FILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLS 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 749111678  160 VRLTANMIAGHLLLTLLGNTGPSMSTI-LLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSEVN 225
Cdd:TIGR01131 160 VRLFANISAGHLLLTLLSGLLFSLMSSaIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-223 6.89e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 118.68  E-value: 6.89e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDPSSSIFNLSLN----WLSTFLGILMIPSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMgANGSTFLFVS 76
Cdd:MTH00005   1 MLTDIFSSFDPATNSLFNNLSstafWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKH-LKGFSSLISA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  77 LFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPG 156
Cdd:MTH00005  80 LFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPI 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 157 TLAVRLTANMIAGHLLLTLLGNTGPSM---STILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00005 160 TLSFRLAANMSAGHIVLSLIGIYAASAlfsSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 67-222 1.16e-32

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 115.57  E-value: 1.16e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  67 ANGSTFLFVSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCI 146
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 749111678 147 ETISNVIRPGTLAVRLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSS 222
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-223 3.05e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 114.19  E-value: 3.05e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDPSSSIFNL--SLNWLSTFLGILMIPSAYWLMPSRYHIFWNNILLTLHKEFKTLLGpMGANGSTFLFVSLF 78
Cdd:MTH00173   1 MMVDLFSSFDDHNSSFSSlsFLMWLLSLMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSG-LNLGGFSLLLSSLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  79 SMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTL 158
Cdd:MTH00173  80 LFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTL 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 159 AVRLTANMIAGHLLLTLLGNT-----GPSMSTILLSVLIItQIALLVLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00173 160 TVRLLANISAGHIVLTLIGNYlssslFSSSVVSLLLVLLI-QVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-223 1.93e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 109.65  E-value: 1.93e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDpSSSIFNLSLNWLSTFLGILMIPSAYWLMP-SRYHIFWNNILLTLHKEFKTLLGPMGANGStFLFVSLFS 79
Cdd:MTH00179   1 MMLSMFDQFE-SPSLLGIPLLALALLLPWLLFPSLTNRWLnNRLSTLQSWFFGSFTFQLMQPINKKGHKWA-VLFLSLML 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  80 MILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLA 159
Cdd:MTH00179  79 FLLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALG 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 749111678 160 VRLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQ---IALLVLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00179 159 VRLTANITAGHLLMHLISSAVFVLMNFMGMVALLTLlvlFLLTLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-220 7.73e-26

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 100.03  E-value: 7.73e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDpSSSIFNLSLNWLSTFLGILMIPSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMGANGSTFLfVSLFSM 80
Cdd:MTH00101   1 MNENLFASFI-TPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLML-MSLILF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  81 ILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAV 160
Cdd:MTH00101  79 IGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAV 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 749111678 161 RLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALL---VLESAVAMIQSYVFAVLSTLY 220
Cdd:MTH00101 159 RLTANITAGHLLIHLIGGATLALMSISTTTALITFIILIlltILEFAVALIQAYVFTLLVSLY 221
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-223 9.50e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 99.90  E-value: 9.50e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFDpSSSIFNLSLNWLSTFLGILMIPSA-YWLMPSRYHIFwnnILLTLHKEFKTLLGPMGANGS--TFLFVSL 77
Cdd:MTH00120   1 MNLNFFDQFS-SPELLGIPLILLAMLIPALLIPSPkNRLLTNRLTTL---QLWLIKLITKQLMLPLNKKGHkwALILTSL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  78 FSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGT 157
Cdd:MTH00120  77 MLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLA 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 749111678 158 LAVRLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALL---VLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00120 157 LGVRLTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLlltILELAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-223 8.67e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 97.34  E-value: 8.67e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   1 MMTNLFSVFdPSSSIFNLSLNWLSTFLGILMIPSA--YWLmpsryhifwNNILLTLHKEF-----KTLLGPMGANGS--T 71
Cdd:MTH00073   1 MNLSFFDQF-LSPTLLGIPLIMLAMLLPWLLFPTPtnKWL---------NNRLSTLQIWFlqnftKQLMLPLNTPGHkwA 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  72 FLFVSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISN 151
Cdd:MTH00073  71 LILTSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISL 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 749111678 152 VIRPGTLAVRLTANMIAGHLLLTLLGNTGPSMSTILLSVLIITQIALL---VLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00073 151 FIRPLALGVRLTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFlltLLEIAVAMIQAYVFVLLLSLYLQE 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 3-223 1.16e-24

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 96.97  E-value: 1.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   3 TNLFSVFDPSSsIFNLSLNWLSTFLGI---LMIPSAYWLmPSRYHIFWNNILLTLhkeFKTLLGPMGANGSTF--LFVSL 77
Cdd:MTH00035   5 NSIFGQFSPDT-ILFIPLTLLSSVIALswlFFINPTNWL-PSRSQSIWLTFRQEI---LKLIFQNTNPNTAPWagLLTTV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  78 FSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGT 157
Cdd:MTH00035  80 FILILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIA 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 749111678 158 LAVRLTANMIAGHLLLTLLGNT--GPSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00035 160 LGLRLAANLTAGHLLIFLLSTAiwELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQ 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 25-223 1.30e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 96.87  E-value: 1.30e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  25 TFLGILMIPSAY---WLM-PSRYHIFWNNILLTLHKEF-----KTLLGPMGANGSTF--LFVSLFSMILFNNFMGLFPYI 93
Cdd:MTH00132  13 TYLGIPLIALALtlpWILfPTPTSRWLNNRLLTLQGWFinrftQQLLLPLNVGGHKWalLLTSLMLFLITLNMLGLLPYT 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  94 FTSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLL 173
Cdd:MTH00132  93 FTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLI 172

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 749111678 174 TLLGNTGPSMSTILLSVLIITQIALL---VLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00132 173 QLIATAAFVLLPLMPTVAILTATLLFlltLLEVAVAMIQAYVFVLLLSLYLQE 225
ATP-synt_A pfam00119
ATP synthase A chain;
22-222 1.99e-19

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 82.92  E-value: 1.99e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   22 WLSTFLGILMIPSAYW----LMPSRYHIFWNNILLTLHKEFKTLLGPMGANGSTFLFVSLFSMILFNNFMGLF---PYIF 94
Cdd:pfam00119   5 LIVALILLLFLLLATRktkkLVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678   95 TSTSHLTLTLTLALPLWLCFMLFG-WINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLL 173
Cdd:pfam00119  85 TVTADINVTLALALIVFLLVHYYGiKKHGLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLL 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 749111678  174 TLLGNTGPSMSTILLSVLIIT---QIALLVLESAVAMIQSYVFAVLSTLYSS 222
Cdd:pfam00119 165 LLLAGLIFALLSAGFLLGVIPpllGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 15-220 1.07e-18

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 81.24  E-value: 1.07e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  15 IFNLSLNWLSTFLGILMIPSAYWLMPSRYHIFWNNILLTLHKEFKTLLGPMGANGSTFLFvSLFSMILFNNFMGLFPYIF 94
Cdd:MTH00172  17 LTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFII-SLFFFIVFLNLLGLFPYVF 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  95 TSTSHLTLTLTLALPLWLCFMLFGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLLT 174
Cdd:MTH00172  96 TPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFA 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 749111678 175 LLGNTGPSMSTI-----LLSVLIITQIALlvLESAVAMIQSYVFAVLSTLY 220
Cdd:MTH00172 176 ILAGFGFNMLCAsgflsLFPLLIMVFITL--LEIAVAVIQAYVFCLLTTIY 224
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 37-220 2.54e-16

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 75.04  E-value: 2.54e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  37 WLMPSRYHIFWNNILLTLHKEFKTLLGPMGANGSTFLFvSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFML 116
Cdd:MTH00175  50 KLIPNRWQSIMELIYLNIRSVVHDNLGKSGQKYFPFIL-SLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTL 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 117 FGWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLLTLLGNTGPSMST----ILLSVLI 192
Cdd:MTH00175 129 LGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSngliILSLFPM 208

                        170       180
                 ....*....|....*....|....*...
gi 749111678 193 ITQIALLVLESAVAMIQSYVFAVLSTLY 220
Cdd:MTH00175 209 LIMIFITLLEMAVAVIQAYVFCLLTTIY 236
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 63-220 6.52e-14

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 67.79  E-value: 6.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  63 GPMGANGSTF--LFVSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFG-WINNTQHMFAHLVPQGTPAvL 139
Cdd:COG0356   48 DTIGKKGRKFapLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGiKKKGLGGYLKHLFFPPFPW-L 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 140 MPFMVCIETISNVIRPGTLAVRLTANMIAGHLLLTLLGNTGPSMSTILLSVLIitQIALLVLESAVAMIQSYVFAVLSTL 219
Cdd:COG0356  127 APLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLLLGVLSLLL--PVAWTAFELLVGFLQAYIFTMLTAV 204


                 .
gi 749111678 220 Y 220
Cdd:COG0356  205 Y 205
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 38-220 3.55e-13

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 66.50  E-value: 3.55e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  38 LMPSRYHIFWNNILLTLHKEFKTLLGPMGANGSTFLfVSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLF 117
Cdd:MTH00174  59 LVPNRILVGLELIYSHFYTVLKDNLGNKGGNYLAFV-LSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLA 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 118 GWINNTQHMFAHLVPQGTPAVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLLTLLGNTGPSM--STILLSVLIITQ 195
Cdd:MTH00174 138 GLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMinTGILIGSFVPFA 217

                        170       180
                 ....*....|....*....|....*..
gi 749111678 196 IALLV--LESAVAMIQSYVFAVLSTLY 220
Cdd:MTH00174 218 ILIFVtiLEMAVAIIQAYVFTLLTIVY 244
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 73-220 3.75e-09

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 54.80  E-value: 3.75e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  73 LFVSLFSMILFNNFMGLFP-YIFTSTSHLTLTLTLALPLWLCFMLFG-WINNTQHMFAHLVPQgtpavLMPFMVCIETIS 150
Cdd:PRK05815  75 LAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGiKKKGLGGYLKEFYLQ-----PHPLLLPIEIIS 149

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 151 NVIRPGTLAVRLTANMIAGHLLLTLLGnTGPSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLY 220
Cdd:PRK05815 150 EFSRPISLSLRLFGNMLAGELILALIA-LLGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVY 218
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 128-220 1.25e-06

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 48.35  E-value: 1.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 128 AHLVPQGTPAVLMPFMVCIETI-SNVIRPGTLAVRLTANMIAGHLLLT-LLGNTGPSMSTILLSVLIITQIALLVLESAV 205
Cdd:PRK13417 250 WHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVIILaLMGFIFQFQSWGIVPVSVIGSGLIYVLEIFV 329

                         90
                 ....*....|....*
gi 749111678 206 AMIQSYVFAVLSTLY 220
Cdd:PRK13417 330 AFLQAYIFVLLTSLF 344
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 127-220 1.11e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 45.50  E-value: 1.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678 127 FAHLVpQGTPAVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLLtllgntgpsMSTILLSVLIITQIALLV------ 200
Cdd:PRK13419 228 LAHLT-GGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAGHIVI---------LSLIFISFILKSYIVAVAvsvpfa 297

                         90       100
                 ....*....|....*....|....*
gi 749111678 201 -----LESAVAMIQSYVFAVLSTLY 220
Cdd:PRK13419 298 ifiylLELFVAFLQAYIFTMLSALF 322
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 70-223 1.43e-03

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 38.42  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749111678  70 STFLFVSLFSMILFNNFMGLFPYIFTSTSHLTLTLTLALPLWLCFMLFGWINNTQhmFAHLVPQGTPAVLMPF-MVCIET 148
Cdd:MTH00087  51 SSVISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEK--FSVYLSKGSDSFLKTFsMLFVEI 128

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 749111678 149 ISNVIRPGTLAVRLTANMIAGHLLLtllgntgpSMSTILLSVLIITQIALLVLESAVAMIQSYVFAVLSTLYSSE 223
Cdd:MTH00087 129 VSELSRPLALTLRLTVNLMVGHLIS--------SLLNFLGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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