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Conserved domains on  [gi|747165331|ref|NP_001291213|]
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ubiquitin carboxyl-terminal hydrolase 6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
528-1114 3.07e-79

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 280.23  E-value: 3.07e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  528 EKGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKSVAPLKLRR 607
Cdd:COG5560   262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK 341
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  608 TIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE---LKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQ 684
Cdd:COG5560   342 TIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGM 421
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  685 LRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMDLEITVIKLDGT-TPVRygLRLNMDEKYTGLKKQLRDLCG-LNSEQI 762
Cdd:COG5560   422 YKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRrQPLK--IELDASSTIRGLKKLVDAEYGkLGCFEI 499
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  763 LLAEVHDSNIKNF--PQDNQKVQLSVSGFLCAFeipvpsspisassptqidfsSSPSTNGmftlttngdlpkpIFIPngm 840
Cdd:COG5560   500 KVMCIYYGGNYNMlePADKVLLQDIPQTDFVYL--------------------YETNDNG-------------IEVP--- 543
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  841 pntVVPCGTEKNFTNGMVNGHmPSLP---DSPFTGYIIAVHRKMMRTELYFLSPQENRPSLFGMPLIVPCTVHTRKKDLY 917
Cdd:COG5560   544 ---VVHLRIEKGYKSKRLFGD-PFLQlnvLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLE 619
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  918 DAvwIQVswlarplpPQEASIHAQDrdncmgyQYPFTLRVVqkdgNSCAWCPQyrfcrgckidcGEDRAFIGNAyiavdw 997
Cdd:COG5560   620 TE--IDT--------KREEQVEEEG-------QMNFNDAVV----ISCEWEEK-----------RYLSLFSYDP------ 661
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  998 hptalhlryqtsqervvdkhESVEQSRRAQAEPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLI 1077
Cdd:COG5560   662 --------------------LWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILI 721
                         570       580       590
                  ....*....|....*....|....*....|....*..
gi 747165331 1078 IHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLVPRD 1114
Cdd:COG5560   722 IHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD 758
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
97-312 3.27e-60

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


:

Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 205.62  E-value: 3.27e-60
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331     97 VYKGIPMNIRGPVWSVLLNIQEIKLKN-PGRYQIMKERGKRSSEHIHH-IDLDVRTTLRNHVFFRDRYGAKQRELFYILL 174
Cdd:smart00164    1 VRKGVPPSLRGVVWKLLLNAQPMDTSAdKDLYSRLLKETAPDDKSIVHqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331    175 AYSEYNPEVGYCRDLSHITALFLLYLP-EEDAFWALVQLLAserHSLPGFHSPNGGTVQGLQDQQEHVVPKSQPKTMWHQ 253
Cdd:smart00164   81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLME---RYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHL 157
                           170       180       190       200       210
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 747165331    254 DKEGLCGQCASLGCLLRNLIDGISLGLTLRLWDVYLVEGEQVLMPITSIALKVQQKRLM 312
Cdd:smart00164  158 KDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
1029-1366 2.88e-23

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member pfam00443:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 310  Bit Score: 102.14  E-value: 2.88e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1029 EPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFlresfdpsa 1108
Cdd:pfam00443  160 KTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF--------- 230
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1109 flvprdpalcqhkpltpqgdelskPRILarevkkvdaqssagkedmllskspsslsanissspkgspsssrksgtscpss 1188
Cdd:pfam00443  231 ------------------------PLEL---------------------------------------------------- 234
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1189 knsspnssprtlgrskgrlrlpqigsknkpssskknlDASkengagqiceladalsrghmrggsqpelvtpqdhevalan 1268
Cdd:pfam00443  235 -------------------------------------DLS---------------------------------------- 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1269 gflyeheacgngcgdgysngqlgnhseEDSTDDQREDTHIKPIYNLYAISCHSGILSGGHYITYAKNP-NCKWYCYNDSS 1347
Cdd:pfam00443  238 ---------------------------RYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYeNNRWYKFDDEK 290
                          330       340
                   ....*....|....*....|
gi 747165331  1348 CEELHPD-EIDTDSAYILFY 1366
Cdd:pfam00443  291 VTEVDEEtAVLSSSAYILFY 310
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
528-1114 3.07e-79

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 280.23  E-value: 3.07e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  528 EKGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKSVAPLKLRR 607
Cdd:COG5560   262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK 341
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  608 TIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE---LKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQ 684
Cdd:COG5560   342 TIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGM 421
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  685 LRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMDLEITVIKLDGT-TPVRygLRLNMDEKYTGLKKQLRDLCG-LNSEQI 762
Cdd:COG5560   422 YKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRrQPLK--IELDASSTIRGLKKLVDAEYGkLGCFEI 499
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  763 LLAEVHDSNIKNF--PQDNQKVQLSVSGFLCAFeipvpsspisassptqidfsSSPSTNGmftlttngdlpkpIFIPngm 840
Cdd:COG5560   500 KVMCIYYGGNYNMlePADKVLLQDIPQTDFVYL--------------------YETNDNG-------------IEVP--- 543
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  841 pntVVPCGTEKNFTNGMVNGHmPSLP---DSPFTGYIIAVHRKMMRTELYFLSPQENRPSLFGMPLIVPCTVHTRKKDLY 917
Cdd:COG5560   544 ---VVHLRIEKGYKSKRLFGD-PFLQlnvLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLE 619
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  918 DAvwIQVswlarplpPQEASIHAQDrdncmgyQYPFTLRVVqkdgNSCAWCPQyrfcrgckidcGEDRAFIGNAyiavdw 997
Cdd:COG5560   620 TE--IDT--------KREEQVEEEG-------QMNFNDAVV----ISCEWEEK-----------RYLSLFSYDP------ 661
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  998 hptalhlryqtsqervvdkhESVEQSRRAQAEPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLI 1077
Cdd:COG5560   662 --------------------LWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILI 721
                         570       580       590
                  ....*....|....*....|....*....|....*..
gi 747165331 1078 IHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLVPRD 1114
Cdd:COG5560   722 IHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD 758
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
97-312 3.27e-60

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 205.62  E-value: 3.27e-60
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331     97 VYKGIPMNIRGPVWSVLLNIQEIKLKN-PGRYQIMKERGKRSSEHIHH-IDLDVRTTLRNHVFFRDRYGAKQRELFYILL 174
Cdd:smart00164    1 VRKGVPPSLRGVVWKLLLNAQPMDTSAdKDLYSRLLKETAPDDKSIVHqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331    175 AYSEYNPEVGYCRDLSHITALFLLYLP-EEDAFWALVQLLAserHSLPGFHSPNGGTVQGLQDQQEHVVPKSQPKTMWHQ 253
Cdd:smart00164   81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLME---RYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHL 157
                           170       180       190       200       210
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 747165331    254 DKEGLCGQCASLGCLLRNLIDGISLGLTLRLWDVYLVEGEQVLMPITSIALKVQQKRLM 312
Cdd:smart00164  158 KDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
532-744 1.39e-51

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 184.57  E-value: 1.39e-51
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   532 TGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPigmKGHMAKCYGDLVQELWSGTQKS-VAPLKLRRTIA 610
Cdd:pfam00443    1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKALQKNSKSSsVSPKMFKKSLG 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   611 KYAPKFDGFQQQDSQELLAFLLDGLHEDLNRvhekpyvelkdsdgrpdwevaaeawdNHLRRNRSIIVDLFHGQLRSQVK 690
Cdd:pfam00443   78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLK 131
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 747165331   691 CKTCGHISVRFDPFNFLSLPLPMDSYMDLEITVIK--LDGTTPvrygLRLNMDEKY 744
Cdd:pfam00443  132 CLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQIcfLQFSKL----EELDDEEKY 183
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
142-312 3.88e-37

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 138.16  E-value: 3.88e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   142 HHIDLDVRTTLRNHVFFRDRYGakQRELFYILLAYSEYNPEVGYCRDLSHITALFLL-YLPEEDAFWALVQLLasERHSL 220
Cdd:pfam00566   10 EQIEKDVPRTFPHSFFFDNGPG--QNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLvYLDEEDAFWCFVSLL--ENYLL 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   221 PGFHSPNGGTVQGLQDQQEHVVPKSQPKTMWHQDKEGLCGQCASLGCLLRNLIDGISLGLTLRLWDVYLVEGEQVLMPIT 300
Cdd:pfam00566   86 RDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRV 165
                          170
                   ....*....|...
gi 747165331   301 SIA-LKVQQKRLM 312
Cdd:pfam00566  166 ALAiLKRFREELL 178
COG5210 COG5210
GTPase-activating protein [General function prediction only];
90-335 1.00e-35

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 143.40  E-value: 1.00e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   90 SSKLIDRVYKGIPMNIRGPVWSVLLNIQEIKLKNPGRYQI----MKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAK 165
Cdd:COG5210   202 LSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERllnlHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIR 281
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  166 QRELFYILLAYSEYNPEVGYCRDLSHITALFLLYLP-EEDAFWALVQLLasERHSLPGFHSPNGGTVQGLQDQQEHVVPK 244
Cdd:COG5210   282 AENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLEsEEQAFWCLVKLL--KNYGLPGYFLKNLSGLHRDLKVLDDLVEE 359
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  245 SQPKtMW--HQDKEGLCGQCAS---LGCLLRNLidgiSLGLTLRLWDVYLVEGEQVLMPITSIALKVQQKRLMKTSRCGL 319
Cdd:COG5210   360 LDPE-LYehLLREGVVLLMFAFrwfLTLFVREF----PLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDEL 434
                         250
                  ....*....|....*.
gi 747165331  320 WARLRNQFFDTWAMND 335
Cdd:COG5210   435 LDLLLKQLFLHSGKEA 450
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1023-1367 6.44e-26

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 107.76  E-value: 6.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1023 SRRAQAEPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRE 1102
Cdd:cd02674    76 SGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLN 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1103 SFDPSAFLVPRDPalcqhkpltpqgdelskprilarevkkvdaqssagkedmllskspsslsanissspkgspsssrksg 1182
Cdd:cd02674   156 DLDLTPYVDTRSF------------------------------------------------------------------- 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1183 tscpssknsspnssprtlgrskgrlrlpqigsknkpssskknldaskengagqiceladalsrghmrggsqpelvtpqdh 1262
Cdd:cd02674       --------------------------------------------------------------------------------
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1263 evalANGFLYeheacgngcgdgysngqlgnhseedstddqredthikpiyNLYAISCHSGILSGGHYITYAKNPNC-KWY 1341
Cdd:cd02674   169 ----TGPFKY----------------------------------------DLYAVVNHYGSLNGGHYTAYCKNNETnDWY 204
                         330       340
                  ....*....|....*....|....*.
gi 747165331 1342 CYNDSSCEELHPDEIDTDSAYILFYE 1367
Cdd:cd02674   205 KFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
1029-1366 2.88e-23

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 102.14  E-value: 2.88e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1029 EPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFlresfdpsa 1108
Cdd:pfam00443  160 KTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF--------- 230
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1109 flvprdpalcqhkpltpqgdelskPRILarevkkvdaqssagkedmllskspsslsanissspkgspsssrksgtscpss 1188
Cdd:pfam00443  231 ------------------------PLEL---------------------------------------------------- 234
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1189 knsspnssprtlgrskgrlrlpqigsknkpssskknlDASkengagqiceladalsrghmrggsqpelvtpqdhevalan 1268
Cdd:pfam00443  235 -------------------------------------DLS---------------------------------------- 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1269 gflyeheacgngcgdgysngqlgnhseEDSTDDQREDTHIKPIYNLYAISCHSGILSGGHYITYAKNP-NCKWYCYNDSS 1347
Cdd:pfam00443  238 ---------------------------RYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYeNNRWYKFDDEK 290
                          330       340
                   ....*....|....*....|
gi 747165331  1348 CEELHPD-EIDTDSAYILFY 1366
Cdd:pfam00443  291 VTEVDEEtAVLSSSAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
1297-1367 2.22e-14

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 74.83  E-value: 2.22e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 747165331 1297 DSTDDQREDTHIKPIYNLYAISCHSG-ILSGGHYITYAKNP-NCKWYCYNDS-----SCEELHPDEIDTDSAYILFYE 1367
Cdd:cd02257   178 SEGEKDSDSDNGSYKYELVAVVVHSGtSADSGHYVAYVKDPsDGKWYKFNDDkvtevSEEEVLEFGSLSSSAYILFYE 255
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
1297-1368 1.71e-09

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 60.59  E-value: 1.71e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 747165331 1297 DSTDDQREDTHikpiYNLYAISCHSGILSGGHYITYAKNpNCKWYCYNDSSCEELHPDEIDT---DSAYILFYEQ 1368
Cdd:COG5533   214 DQILNIVKETY----YDLVGFVLHQGSLEGGHYIAYVKK-GGKWEKANDSDVTPVSEEEAINekaKNAYLYFYER 283
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
528-1114 3.07e-79

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 280.23  E-value: 3.07e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  528 EKGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKSVAPLKLRR 607
Cdd:COG5560   262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK 341
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  608 TIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE---LKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQ 684
Cdd:COG5560   342 TIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGM 421
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  685 LRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMDLEITVIKLDGT-TPVRygLRLNMDEKYTGLKKQLRDLCG-LNSEQI 762
Cdd:COG5560   422 YKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRrQPLK--IELDASSTIRGLKKLVDAEYGkLGCFEI 499
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  763 LLAEVHDSNIKNF--PQDNQKVQLSVSGFLCAFeipvpsspisassptqidfsSSPSTNGmftlttngdlpkpIFIPngm 840
Cdd:COG5560   500 KVMCIYYGGNYNMlePADKVLLQDIPQTDFVYL--------------------YETNDNG-------------IEVP--- 543
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  841 pntVVPCGTEKNFTNGMVNGHmPSLP---DSPFTGYIIAVHRKMMRTELYFLSPQENRPSLFGMPLIVPCTVHTRKKDLY 917
Cdd:COG5560   544 ---VVHLRIEKGYKSKRLFGD-PFLQlnvLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLE 619
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  918 DAvwIQVswlarplpPQEASIHAQDrdncmgyQYPFTLRVVqkdgNSCAWCPQyrfcrgckidcGEDRAFIGNAyiavdw 997
Cdd:COG5560   620 TE--IDT--------KREEQVEEEG-------QMNFNDAVV----ISCEWEEK-----------RYLSLFSYDP------ 661
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  998 hptalhlryqtsqervvdkhESVEQSRRAQAEPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLI 1077
Cdd:COG5560   662 --------------------LWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILI 721
                         570       580       590
                  ....*....|....*....|....*....|....*..
gi 747165331 1078 IHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLVPRD 1114
Cdd:COG5560   722 IHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD 758
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
97-312 3.27e-60

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 205.62  E-value: 3.27e-60
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331     97 VYKGIPMNIRGPVWSVLLNIQEIKLKN-PGRYQIMKERGKRSSEHIHH-IDLDVRTTLRNHVFFRDRYGAKQRELFYILL 174
Cdd:smart00164    1 VRKGVPPSLRGVVWKLLLNAQPMDTSAdKDLYSRLLKETAPDDKSIVHqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331    175 AYSEYNPEVGYCRDLSHITALFLLYLP-EEDAFWALVQLLAserHSLPGFHSPNGGTVQGLQDQQEHVVPKSQPKTMWHQ 253
Cdd:smart00164   81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLME---RYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHL 157
                           170       180       190       200       210
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 747165331    254 DKEGLCGQCASLGCLLRNLIDGISLGLTLRLWDVYLVEGEQVLMPITSIALKVQQKRLM 312
Cdd:smart00164  158 KDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
532-744 1.39e-51

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 184.57  E-value: 1.39e-51
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   532 TGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPigmKGHMAKCYGDLVQELWSGTQKS-VAPLKLRRTIA 610
Cdd:pfam00443    1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKALQKNSKSSsVSPKMFKKSLG 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   611 KYAPKFDGFQQQDSQELLAFLLDGLHEDLNRvhekpyvelkdsdgrpdwevaaeawdNHLRRNRSIIVDLFHGQLRSQVK 690
Cdd:pfam00443   78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLK 131
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 747165331   691 CKTCGHISVRFDPFNFLSLPLPMDSYMDLEITVIK--LDGTTPvrygLRLNMDEKY 744
Cdd:pfam00443  132 CLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQIcfLQFSKL----EELDDEEKY 183
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
142-312 3.88e-37

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 138.16  E-value: 3.88e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   142 HHIDLDVRTTLRNHVFFRDRYGakQRELFYILLAYSEYNPEVGYCRDLSHITALFLL-YLPEEDAFWALVQLLasERHSL 220
Cdd:pfam00566   10 EQIEKDVPRTFPHSFFFDNGPG--QNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLvYLDEEDAFWCFVSLL--ENYLL 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   221 PGFHSPNGGTVQGLQDQQEHVVPKSQPKTMWHQDKEGLCGQCASLGCLLRNLIDGISLGLTLRLWDVYLVEGEQVLMPIT 300
Cdd:pfam00566   86 RDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRV 165
                          170
                   ....*....|...
gi 747165331   301 SIA-LKVQQKRLM 312
Cdd:pfam00566  166 ALAiLKRFREELL 178
COG5210 COG5210
GTPase-activating protein [General function prediction only];
90-335 1.00e-35

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 143.40  E-value: 1.00e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331   90 SSKLIDRVYKGIPMNIRGPVWSVLLNIQEIKLKNPGRYQI----MKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAK 165
Cdd:COG5210   202 LSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERllnlHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIR 281
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  166 QRELFYILLAYSEYNPEVGYCRDLSHITALFLLYLP-EEDAFWALVQLLasERHSLPGFHSPNGGTVQGLQDQQEHVVPK 244
Cdd:COG5210   282 AENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLEsEEQAFWCLVKLL--KNYGLPGYFLKNLSGLHRDLKVLDDLVEE 359
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  245 SQPKtMW--HQDKEGLCGQCAS---LGCLLRNLidgiSLGLTLRLWDVYLVEGEQVLMPITSIALKVQQKRLMKTSRCGL 319
Cdd:COG5210   360 LDPE-LYehLLREGVVLLMFAFrwfLTLFVREF----PLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDEL 434
                         250
                  ....*....|....*.
gi 747165331  320 WARLRNQFFDTWAMND 335
Cdd:COG5210   435 LDLLLKQLFLHSGKEA 450
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1023-1367 6.44e-26

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 107.76  E-value: 6.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1023 SRRAQAEPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRE 1102
Cdd:cd02674    76 SGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLN 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1103 SFDPSAFLVPRDPalcqhkpltpqgdelskprilarevkkvdaqssagkedmllskspsslsanissspkgspsssrksg 1182
Cdd:cd02674   156 DLDLTPYVDTRSF------------------------------------------------------------------- 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1183 tscpssknsspnssprtlgrskgrlrlpqigsknkpssskknldaskengagqiceladalsrghmrggsqpelvtpqdh 1262
Cdd:cd02674       --------------------------------------------------------------------------------
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1263 evalANGFLYeheacgngcgdgysngqlgnhseedstddqredthikpiyNLYAISCHSGILSGGHYITYAKNPNC-KWY 1341
Cdd:cd02674   169 ----TGPFKY----------------------------------------DLYAVVNHYGSLNGGHYTAYCKNNETnDWY 204
                         330       340
                  ....*....|....*....|....*.
gi 747165331 1342 CYNDSSCEELHPDEIDTDSAYILFYE 1367
Cdd:cd02674   205 KFDDSRVTKVSESSVVSSSAYILFYE 230
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-723 1.51e-23

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 100.82  E-value: 1.51e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSNtqpltqyfisgrhlyelnrtnpigmkghmakcygdlvqelwsgtqksvaplklrrtiaky 612
Cdd:cd02674     1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  613 apkfdgfQQQDSQELLAFLLDGLHedlnrvhekpyvelkdsdgrpdwevaaeawdnhlrrnrSIIVDLFHGQLRSQVKCK 692
Cdd:cd02674    21 -------DQQDAQEFLLFLLDGLH--------------------------------------SIIVDLFQGQLKSRLTCL 55
                         170       180       190
                  ....*....|....*....|....*....|.
gi 747165331  693 TCGHISVRFDPFNFLSLPLPMDSYMDLEITV 723
Cdd:cd02674    56 TCGKTSTTFEPFTYLSLPIPSGSGDAPKVTL 86
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
1029-1366 2.88e-23

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 102.14  E-value: 2.88e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1029 EPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFlresfdpsa 1108
Cdd:pfam00443  160 KTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF--------- 230
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1109 flvprdpalcqhkpltpqgdelskPRILarevkkvdaqssagkedmllskspsslsanissspkgspsssrksgtscpss 1188
Cdd:pfam00443  231 ------------------------PLEL---------------------------------------------------- 234
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1189 knsspnssprtlgrskgrlrlpqigsknkpssskknlDASkengagqiceladalsrghmrggsqpelvtpqdhevalan 1268
Cdd:pfam00443  235 -------------------------------------DLS---------------------------------------- 237
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  1269 gflyeheacgngcgdgysngqlgnhseEDSTDDQREDTHIKPIYNLYAISCHSGILSGGHYITYAKNP-NCKWYCYNDSS 1347
Cdd:pfam00443  238 ---------------------------RYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYeNNRWYKFDDEK 290
                          330       340
                   ....*....|....*....|
gi 747165331  1348 CEELHPD-EIDTDSAYILFY 1366
Cdd:pfam00443  291 VTEVDEEtAVLSSSAYILFY 310
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
531-709 1.91e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 99.66  E-value: 1.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  531 ATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIgmkghMAKCYGDLVQELWSGTQKSVAPLKLRRTIA 610
Cdd:cd02661     1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFC-----MMCALEAHVERALASSGPGSAPRIFSSNLK 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  611 KYAPKFDGFQQQDSQELLAFLLDGLHED-LNRvhekpYVELKDSDgrpdwevaaeawdnHLRRNRSIIVDLFHGQLRSQV 689
Cdd:cd02661    76 QISKHFRIGRQEDAHEFLRYLLDAMQKAcLDR-----FKKLKAVD--------------PSSQETTLVQQIFGGYLRSQV 136
                         170       180
                  ....*....|....*....|
gi 747165331  690 KCKTCGHISVRFDPFNFLSL 709
Cdd:cd02661   137 KCLNCKHVSNTYDPFLDLSL 156
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-712 4.43e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 98.98  E-value: 4.43e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPigmKGHMAKCYGDLVQELW-SGTQKSVAPLKLRRTIAK 611
Cdd:cd02660     2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSP---NSCLSCAMDEIFQEFYySGDRSPYGPINLLYLSWK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  612 YAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPyvelkdsdgrpdwevaaeawdNHLRRNRSIIVDLFHGQLRSQVKC 691
Cdd:cd02660    79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137
                         170       180
                  ....*....|....*....|.
gi 747165331  692 KTCGHISVRFDPFNFLSLPLP 712
Cdd:cd02660   138 QRCGGVSTTVDPFLDLSLDIP 158
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
533-715 7.28e-22

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 96.78  E-value: 7.28e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCvsntqpltqyfisgrhLYelnrtnpigmkghmakcygdlvqelwsgtqksvaplklrrtiaky 612
Cdd:cd02257     1 GLNNLGNTCYLNSVLQA----------------LF--------------------------------------------- 19
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  613 apkfdgFQQQDSQELLAFLLDGLHEDLNRVHEKpyvelkdsdgrpdwevaaeawDNHLRRNRSIIVDLFHGQLRSQVKCK 692
Cdd:cd02257    20 ------SEQQDAHEFLLFLLDKLHEELKKSSKR---------------------TSDSSSLKSLIHDLFGGKLESTIVCL 72
                         170       180
                  ....*....|....*....|...
gi 747165331  693 TCGHISVRFDPFNFLSLPLPMDS 715
Cdd:cd02257    73 ECGHESVSTEPELFLSLPLPVKG 95
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-729 7.09e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 88.60  E-value: 7.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSNTQPLTqyfisgrhlyelnrtnpigmkghmakcygdlvqELWSGTqksvaPLKLRRTIAKY 612
Cdd:cd02667     1 GLSNLGNTCFFNAVMQNLSQTPALR---------------------------------ELLSET-----PKELFSQVCRK 42
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  613 APKFDGFQQQDSQELLAFLLDGLhedlnrvhekpyvelkdsdgrpdwevaaeawdnhlrrnRSIIVDLFHGQLRSQVKCK 692
Cdd:cd02667    43 APQFKGYQQQDSHELLRYLLDGL--------------------------------------RTFIDSIFGGELTSTIMCE 84
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 747165331  693 TCGHISVRFDPFNFLSLPLP--------MDSYMDLEITVIKLDGT 729
Cdd:cd02667    85 SCGTVSLVYEPFLDLSLPRSdeiksecsIESCLKQFTEVEILEGN 129
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-714 1.02e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 82.76  E-value: 1.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPI-GMKGHMAKcygdLVQELWSG--------------TQ 597
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPAnDLNCQLIK----LADGLLSGryskpaslksendpYQ 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  598 KSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPyvelkdsdgrpdwevaaeawdnhlrrnrsiI 677
Cdd:cd02658    77 VGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLGLN------------------------------P 126
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 747165331  678 VDLFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMD 714
Cdd:cd02658   127 NDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKD 163
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
1029-1122 4.05e-16

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 79.83  E-value: 4.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1029 EPINLDSCLRAFTSEEELGESEMYYCSKCKtHCLATKKLDLWRLPPFLIIHLKRFQFVNDQW-IKSQKIVRFlRESFDPS 1107
Cdd:cd02257    97 PQVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFNEDGTkEKLNTKVSF-PLELDLS 174
                          90
                  ....*....|....*
gi 747165331 1108 AFLVPRDPALCQHKP 1122
Cdd:cd02257   175 PYLSEGEKDSDSDNG 189
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
1297-1367 2.22e-14

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 74.83  E-value: 2.22e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 747165331 1297 DSTDDQREDTHIKPIYNLYAISCHSG-ILSGGHYITYAKNP-NCKWYCYNDS-----SCEELHPDEIDTDSAYILFYE 1367
Cdd:cd02257   178 SEGEKDSDSDNGSYKYELVAVVVHSGtSADSGHYVAYVKDPsDGKWYKFNDDkvtevSEEEVLEFGSLSSSAYILFYE 255
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-712 3.15e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 75.61  E-value: 3.15e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSNTQPLTQYFISgRHLYELNRTNPIGMKGHMakcygdlVQELWSGTQKSVAPLKLRRTIAKY 612
Cdd:cd02664     1 GLINLGNTCYMNSVLQALFMAKDFRRQVLS-LNLPRLGDSQSVMKKLQL-------LQAHLMHTQRRAEAPPDYFLEASR 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  613 APKFDGFQQQDSQELLAFLLDGLHedlnrvhekpyvelkdsdgrpdwevaaeawdnhlrrnrSIIVDLFHGQLRSQVKCK 692
Cdd:cd02664    73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114
                         170       180
                  ....*....|....*....|
gi 747165331  693 TCGHISVRFDPFNFLSLPLP 712
Cdd:cd02664   115 NCNSTSARTERFRDLDLSFP 134
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-712 4.19e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 68.88  E-value: 4.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCvsntqpltqyfisgrhLYELNrtnpigmkghMAKCYGDLVQELWSGTQKS--VAPLKLRRTIA 610
Cdd:cd02663     1 GLENFGNTCYCNSVLQA----------------LYFEN----------LLTCLKDLFESISEQKKRTgvISPKKFITRLK 54
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  611 KYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVELKDSDgrpdwevaaeawDNHLRRNRSIIVDLFHGQLRSQVK 690
Cdd:cd02663    55 RENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNN------------NNNAEPQPTWVHEIFQGILTNETR 122
                         170       180
                  ....*....|....*....|..
gi 747165331  691 CKTCGHISVRFDPFNFLSLPLP 712
Cdd:cd02663   123 CLTCETVSSRDETFLDLSIDVE 144
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1310-1366 2.55e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 66.53  E-value: 2.55e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 747165331 1310 PIYNLYAISCHSGI-LSGGHYITYAKNPNCKWYCYNDSsceELHPDEIDT---DSAYILFY 1366
Cdd:cd02661   246 LKYKLYAVLVHSGFsPHSGHYYCYVKSSNGKWYNMDDS---KVSPVSIETvlsQKAYILFY 303
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1032-1112 3.61e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 65.76  E-value: 3.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1032 NLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFvndqwIKSQKIVRflRESFDPSAFLV 1111
Cdd:cd02661   163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSN-----FRGGKINK--QISFPETLDLS 235

                  .
gi 747165331 1112 P 1112
Cdd:cd02661   236 P 236
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1032-1092 3.78e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 66.13  E-value: 3.78e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 747165331 1032 NLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQF--VNDQWIK 1092
Cdd:cd02659   152 NLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFdfETMMRIK 214
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-745 1.09e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 64.27  E-value: 1.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVsNTQP-----LTQYFISGRHLYELNRTNPIGMKghmakcygDLVQELwSGTQKSVAPLKLRR 607
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCL-RSVPelrdaLKNYNPARRGANQSSDNLTNALR--------DLFDTM-DKKQEPVPPIEFLQ 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  608 TIAKYAPKF------DGFQQQDSQELLAFLLDGLHEDLnrvhekpyvELKDSDGrpdwevaaeawdnhlrrnrSIIVDLF 681
Cdd:cd02657    71 LLRMAFPQFaekqnqGGYAQQDAEECWSQLLSVLSQKL---------PGAGSKG-------------------SFIDQLF 122
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 747165331  682 HGQLRSQVKCKTCGHI-SVRFDPFNFLSLPLPMD---SYMD------LEITVIKLDGTtpvryglrLNMDEKYT 745
Cdd:cd02657   123 GIELETKMKCTESPDEeEVSTESEYKLQCHISITtevNYLQdglkkgLEEEIEKHSPT--------LGRDAIYT 188
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
989-1089 1.21e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 64.25  E-value: 1.21e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  989 GNAYIAVDWHPTALHLRYQ---TSQ------ERVVDKHES-------VEQSrraqaepINLDSCLRAFTSEEELGESEMY 1052
Cdd:cd02663    96 LNNNNNAEPQPTWVHEIFQgilTNEtrcltcETVSSRDETfldlsidVEQN-------TSITSCLRQFSATETLCGRNKF 168
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 747165331 1053 YCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVNDQ 1089
Cdd:cd02663   169 YCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQL 205
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1027-1085 1.87e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 63.93  E-value: 1.87e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 747165331 1027 QAEPINLDSCLRAFTSEEELGESEmYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQF 1085
Cdd:cd02660   172 VSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEH 229
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1029-1112 2.46e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 63.17  E-value: 2.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1029 EPINLDSCLRAFTSEEELGESEMYYCSKCkthCLATKKLDLWRLPPFLIIHLKRFQFVNDQ-WIKSQKIVRFlRESFDPS 1107
Cdd:cd02667   109 SECSIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRSAnLRKVSRHVSF-PEILDLA 184

                  ....*
gi 747165331 1108 AFLVP 1112
Cdd:cd02667   185 PFCDP 189
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1292-1369 1.03e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 61.89  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1292 NHSEEDSTDDQREDThikpIYNLYAISCHSGILSGGHYITYAK-NPNCKWYCYNDSSCEELHPDEID------------- 1357
Cdd:cd02659   236 AKKEGDSEKKDSESY----IYELHGVLVHSGDAHGGHYYSYIKdRDDGKWYKFNDDVVTPFDPNDAEeecfggeetqkty 311
                          90       100
                  ....*....|....*....|.
gi 747165331 1358 ---------TDSAYILFYEQQ 1369
Cdd:cd02659   312 dsgprafkrTTNAYMLFYERK 332
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-720 1.07e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 61.83  E-value: 1.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQcvsntqplTQYFISG-----RHLYELNrtnpIGMKGHMAKCygDLVQELWSGTQKSVAPLKLRR 607
Cdd:cd02671    26 GLNNLGNTCYLNSVLQ--------VLYFCPGfkhglKHLVSLI----SSVEQLQSSF--LLNPEKYNDELANQAPRRLLN 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  608 TIAKYAPKFDGFQQQDSQELLAFLLDGLhedlnrvhekpyvelkdsdgrpdwevaaeawdnhlrrnRSIIVDLFHGQLRS 687
Cdd:cd02671    92 ALREVNPMYEGYLQHDAQEVLQCILGNI--------------------------------------QELVEKDFQGQLVL 133
                         170       180       190
                  ....*....|....*....|....*....|...
gi 747165331  688 QVKCKTCGHISVRFDPFNFLSLPLPMDSYMDLE 720
Cdd:cd02671   134 RTRCLECETFTERREDFQDISVPVQESELSKSE 166
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
1297-1368 1.71e-09

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 60.59  E-value: 1.71e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 747165331 1297 DSTDDQREDTHikpiYNLYAISCHSGILSGGHYITYAKNpNCKWYCYNDSSCEELHPDEIDT---DSAYILFYEQ 1368
Cdd:COG5533   214 DQILNIVKETY----YDLVGFVLHQGSLEGGHYIAYVKK-GGKWEKANDSDVTPVSEEEAINekaKNAYLYFYER 283
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
533-639 2.76e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 56.73  E-value: 2.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSntqpltqyfisgrhlYELNRTNPigMKGHMAKCYGDLVQELwsgtQKSVAPLKLRRTIA-- 610
Cdd:COG5533     1 GLPNLGNTCFMNSVLQILA---------------LYLPKLDE--LLDDLSKELKVLKNVI----RKPEPDLNQEEALKlf 59
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 747165331  611 ---------KYAPKFDGFQQQDSQELLAFLLDGLHEDL 639
Cdd:COG5533    60 talwsskehKVGWIPPMGSQEDAHELLGKLLDELKLDL 97
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-709 4.71e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 56.50  E-value: 4.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQcvsntqplTQYFISG--RHLYELNRT-NPIGMKG---HMAKCYGDLvQELwsgtQKSVAPLKLR 606
Cdd:cd02659     4 GLKNQGATCYMNSLLQ--------QLYMTPEfrNAVYSIPPTeDDDDNKSvplALQRLFLFL-QLS----ESPVKTTELT 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  607 RTIAKYAPK-FDGFQQQDSQELLAFLLDGLHEDLnrvhekPYVELKDsdgrpdwevaaeawdnhlrrnrsIIVDLFHGQL 685
Cdd:cd02659    71 DKTRSFGWDsLNTFEQHDVQEFFRVLFDKLEEKL------KGTGQEG-----------------------LIKNLFGGKL 121
                         170       180
                  ....*....|....*....|....
gi 747165331  686 RSQVKCKTCGHISVRFDPFNFLSL 709
Cdd:cd02659   122 VNYIICKECPHESEREEYFLDLQV 145
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-720 2.18e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 53.52  E-value: 2.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSNTQPLTQYfisgrhlyeLNRTNpigmkghmakcygdlvqelwsgtqksvaplklrrtiaky 612
Cdd:cd02662     1 GLVNLGNTCFMNSVLQALASLPSLIEY---------LEEFL--------------------------------------- 32
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  613 apkfdgfQQQDSQELLAFLLDGLHedlnrvhekpyvelkdsdgrpdwevaaeawdnhlrrnrSIIVDLFHGQLRSQVKCK 692
Cdd:cd02662    33 -------EQQDAHELFQVLLETLE--------------------------------------QLLKFPFDGLLASRIVCL 67
                         170       180       190
                  ....*....|....*....|....*....|..
gi 747165331  693 TCGHIS-VRFDPFNFLSLPLP---MDSYMDLE 720
Cdd:cd02662    68 QCGESSkVRYESFTMLSLPVPnqsSGSGTTLE 99
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1032-1085 4.87e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 53.58  E-value: 4.87e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 747165331 1032 NLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQF 1085
Cdd:cd02668   157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVF 210
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1309-1367 1.30e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 51.62  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1309 KPIYNLYAISCHSGILSGGHYITYAK----------------------NPNCKWYCYNDSSCEELHPDEIDTDSAYILFY 1366
Cdd:cd02667   199 SVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrlsdltkskpaadeagPGSGQWYYISDSDVREVSLEEVLKSEAYLLFY 278

                  .
gi 747165331 1367 E 1367
Cdd:cd02667   279 E 279
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1299-1366 3.54e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 50.83  E-value: 3.54e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 747165331 1299 TDDQREDTHIKP------IYNLYAISCHSGILSGGHYITYAKNPNCKWYCYNDSSCEELHPDEIDTDSAYILFY 1366
Cdd:cd02660   254 TSSSIGDTQDSNsldpdyTYDLFAVVVHKGTLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
530-712 4.24e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 50.78  E-value: 4.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGrHLYELNRTNpigmKGHMAKCYGDLVQELWSGTQ-KS-VAPLKLRR 607
Cdd:cd02669   118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLY-ENYENIKDR----KSELVKRLSELIRKIWNPRNfKGhVSPHELLQ 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  608 TIAKYAPKFDGF-QQQDSQELLAFLLDGLHEDLNRvhekpyvelkdsdgrpdwevaaeawdnHLRRNRSIIVDLFHGQLR 686
Cdd:cd02669   193 AVSKVSKKKFSItEQSDPVEFLSWLLNTLHKDLGG---------------------------SKKPNSSIIHDCFQGKVQ 245
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 747165331  687 --------------SQVKCKTCGH-ISVRFDPFNFLSLPLP 712
Cdd:cd02669   246 ietqkikphaeeegSKDKFFKDSRvKKTSVSPFLLLTLDLP 286
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1311-1367 4.97e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 50.02  E-value: 4.97e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 747165331 1311 IYNLYAISCHSGILS-GGHYITYAKNPNC-KWYCYNDSSCEELHPDEI-------DTDSAYILFYE 1367
Cdd:cd02657   240 YYELVAVITHQGRSAdSGHYVAWVRRKNDgKWIKFDDDKVSEVTEEDIlklsgggDWHIAYILLYK 305
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1029-1090 8.78e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 49.24  E-value: 8.78e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 747165331 1029 EPINLDSCLRAFTSEEELGesemYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFvNDQW 1090
Cdd:cd02658   176 EPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQL-LENW 232
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1286-1367 1.09e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 49.03  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1286 SNGQLGNHSEEDSTDDQrEDTHIKPIYNLYAISCHSGILS-GGHYITYAKNPNCK---------------------WYCY 1343
Cdd:cd02664   218 SSESPLEKKEEESGDDG-ELVTRQVHYRLYAVVVHSGYSSeSGHYFTYARDQTDAdstgqecpepkdaeendesknWYLF 296
                          90       100       110
                  ....*....|....*....|....*....|.
gi 747165331 1344 NDSSCEELHPDEIDT-------DSAYILFYE 1367
Cdd:cd02664   297 NDSRVTFSSFESVQNvtsrfpkDTPYILFYE 327
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1309-1366 3.01e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 47.97  E-value: 3.01e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 747165331 1309 KPIYNLYAISCHSGI-LSGGHYITYAknpncKWYCYNDSSC---------EELHPDEIDTDSAYILFY 1366
Cdd:cd02671   269 NDVYRLFAVVMHSGAtISSGHYTAYV-----RWLLFDDSEVkvteekdflEALSPNTSSTSTPYLLFY 331
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1309-1367 4.83e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 46.59  E-value: 4.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1309 KPIYNLYAISCHSGILSGGHYITYAKNPNC---------------------KWYCYNDSSCEELHPDEIDTD-SAYILFY 1366
Cdd:cd02662   160 KVLYRLRAVVVHYGSHSSGHYVCYRRKPLFskdkepgsfvrmregpsstshPWWRISDTTVKEVSESEVLEQkSAYMLFY 239

                  .
gi 747165331 1367 E 1367
Cdd:cd02662   240 E 240
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1295-1366 7.04e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 46.72  E-value: 7.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1295 EEDSTDDQREDT--HIKPI-YNLYAISCHSGILSGGHYITYAKN-PNCKWYCYNDSSCEElHPDE---IDTDSA----YI 1363
Cdd:cd02666   261 ELAELKHEIEKQfdDLKSYgYRLHAVFIHRGEASSGHYWVYIKDfEENVWRKYNDETVTV-VPASevfLFTLGNtatpYF 339

                  ...
gi 747165331 1364 LFY 1366
Cdd:cd02666   340 LVY 342
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1040-1086 3.23e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 44.40  E-value: 3.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 747165331 1040 FTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFV 1086
Cdd:cd02664   143 FLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYD 189
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
533-711 4.37e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 43.95  E-value: 4.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  533 GLSNLGNTCFMNSSIQCVSNTQPLTQYF--------ISGRHLYELNRTNPIGMKGHMAKCYGdlvqELWSGTQKSVAPLK 604
Cdd:cd02668     1 GLKNLGATCYVNSFLQLWFMNLEFRKAVyecnstedAELKNMPPDKPHEPQTIIDQLQLIFA----QLQFGNRSVVDPSG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331  605 LRRTIakyapKFDGFQQQDSQELLAFLLDGLHEDLNRvhekpyveLKDSDGrpdwevaaeawdnhlrrnRSIIVDLFHGQ 684
Cdd:cd02668    77 FVKAL-----GLDTGQQQDAQEFSKLFLSLLEAKLSK--------SKNPDL------------------KNIVQDLFRGE 125
                         170       180
                  ....*....|....*....|....*..
gi 747165331  685 LRSQVKCKTCGHISVRfdPFNFLSLPL 711
Cdd:cd02668   126 YSYVTQCSKCGRESSL--PSKFYELEL 150
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1306-1367 5.56e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 43.29  E-value: 5.56e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 747165331 1306 THIKPIYNLYAISCHSG-ILSGGHYITYAKN--PNCKW-YCyNDSSCEELHPDEIDTD---SAYILFYE 1367
Cdd:cd02673   178 CGTDAKYSLVAVICHLGeSPYDGHYIAYTKElyNGSSWlYC-SDDEIRPVSKNDVSTNarsSGYLIFYD 245
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1312-1366 1.50e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 41.77  E-value: 1.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 747165331 1312 YNLYAISCHSGILSGGHYITYA-KNPNCKWYCYNDSSCEELHPDEIDTD--------SAYILFY 1366
Cdd:cd02665   164 YELHAVLVHEGQANAGHYWAYIyKQSRQEWEKYNDISVTESSWEEVERDsfgggrnpSAYCLMY 227
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1292-1367 3.67e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 41.14  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1292 NHSEEDSTDDQredthikpIYNLYAISCHSGilSG---GHYITYAKNPNcKWYCYNDSSCEELHPDEID--------TDS 1360
Cdd:cd02663   225 NTTDDAENPDR--------LYELVAVVVHIG--GGpnhGHYVSIVKSHG-GWLLFDDETVEKIDENAVEeffgdspnQAT 293

                  ....*..
gi 747165331 1361 AYILFYE 1367
Cdd:cd02663   294 AYVLFYQ 300
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
1297-1346 4.05e-03

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 41.78  E-value: 4.05e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 747165331 1297 DSTDDQREDTHIkpIYNLYAISCHSGILSGGHYITYAKNP-NCKWYCYNDS 1346
Cdd:COG5077   418 DRDADKSENSDA--VYVLYGVLVHSGDLHEGHYYALLKPEkDGRWYKFDDT 466
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1040-1120 8.90e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 40.38  E-value: 8.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 747165331 1040 FTSEEELGESEMYYcskckthclatkklDLWRLPPFLIIHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLVPRDPALCQ 1119
Cdd:cd02669   314 GKTETELKDSLKRY--------------LISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNL 379

                  .
gi 747165331 1120 H 1120
Cdd:cd02669   380 S 380
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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