|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
206-1481 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 1879.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 206 KKYPQYRRTPRMVYDLPEDRVSFSFPSQESEQNNRGLWLVILPPVVMLIVMGVVAIIQPRGIFILVSLAMFMMTLITSTV 285
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 286 QYFREKNQRKKREEKRERVYKQYLESKRKELQTLSEKQLQVLTHHFPPFEKMKYLTSEISGRIWEKSLESRDFLMLRLGT 365
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 366 GTVPSSYEISMSGGDLANRdVDDLMEQSQHMQRVYKDIRHAPVTVDLQEGPMGLVGKPQIVKNEIHQLIGQLAFFNSYHD 445
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQR-KDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 446 LRFVFIFHEDEYKEWEWMKWLPQFQLPHMYAKGFIYNEQTRDQLLSSIYELLRERDL----EEDKEKKIFQPHFVFVITN 521
Cdd:TIGR03928 240 VQFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLalddANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 522 QQLIAEHVILEYIEGRHEHLGISAIIAAETKESLAENIHTLVRYINEDEGDILIQQKKAVQIPFKLDRHERTTNERFSRT 601
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHLDNEDLEEYSRT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 602 LRTLHHQVGMTNSIPETVTFLELFHAKEVKEIGIRQKWETSESAKSLAVPIGYKGKDDIVYLNLHEKAHGPHGLLAGTTG 681
Cdd:TIGR03928 400 LAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTTG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 682 SGKSEFLQTYILSLAVHFHPHEAAFLLIDYKGGGMAQPFRKMPHLLGTITNIEGSRnfSIRALASIKSELKKRQRLFDQY 761
Cdd:TIGR03928 480 SGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQ--SMRALASIKAELKKRQRLFGEN 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 762 RVNHINDYTKLYKQGETDIPMPHLFLISDEFAELKSEEPDFIRELVSAARIGRSLGVHLILATQKPGGIIDDQIWSNSRF 841
Cdd:TIGR03928 558 NVNHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRF 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 842 KVALKVQDASDSKEILKNSDAANITVTGRGYLQVGNNEVYEQFQSAWSGAPYMEDVYGTED-DIAIVTDTGLIPLS---- 916
Cdd:TIGR03928 638 KLALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEeDIYMINDLGQYELLnedl 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 917 EVDADDAAKKDAPAEIEAVVEEIERIQNEMGIEKLPSPWLPPLAERIPRTLYPAQEKDR----------FFIACVDEPDQ 986
Cdd:TIGR03928 718 SGLKRKKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKlwskpkeplqATIGLLDDPEL 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 987 QRQAPLAYTMMDDGNIGIFGSSGYGKSVAAITFLMNFAEGYTPEELHMYIFDFGNGTLLPLAKLPHTADYFLMDQMRKIE 1066
Cdd:TIGR03928 798 QSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKIE 877
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1067 KFMIRIKEEIERRKRLFREKEVSHIKMYNSLSEEELPFIFITIDNFDIVKDE--MHELETEFIQISRDGQSLGIYFLLTA 1144
Cdd:TIGR03928 878 KLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEpfYEDFEELLIQLAREGASLGIYLVMTA 957
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1145 TRVNAVRQSLLNNIKTKVVHYLMDQSEGYSIYGRPPFSLEPIPGRVMIQKEELYFAQMFLPAEAENDLEMFQTLKADVKA 1224
Cdd:TIGR03928 958 GRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQK 1037
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1225 LAERHAGTAgPDPIPMLPDMLTAGEF--SLRLGPEQEPFRIPVGLHEEKVSPVYFDLGKNKHCLILGQTQRGKTNILKVM 1302
Cdd:TIGR03928 1038 MNEAWTGER-PKPIPMVPEELSLEEFreRYEVRKILEEGSIPIGLDEETVEPVYIDLTENPHLLIVGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1303 LNHLLREGTERVGLFDSIDRGLSQYAQETKV-SYLDTKEDVRQWIETAEAIFTEREAQYTQAVKNGDVhKLSFSPVVLMA 1381
Cdd:TIGR03928 1117 LKTLAKQEKEKIGLIDSIDRGLLAYRDLKEVaTYIEEKEDLKEILAELKEEIELREAAYKEALQNETG-EPAFKPILLII 1195
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1382 DGITRFQQTIDTAIQDKLAMFMKSYAHVGFSFIPAGNHSEFSKGYDSLTTEMKQIRHAMLLVKKSEQNVIPLPYQRQEPD 1461
Cdd:TIGR03928 1196 DDLEDFIQRTDLEIQDILALIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQLRTGILGMRKSDQSFFKLPFTRSEKE 1275
|
1290 1300
....*....|....*....|
gi 743684135 1462 IQPGFGYLVENGKEQKIQIP 1481
Cdd:TIGR03928 1276 LEPGEGYFVVNGKYQKIKIP 1295
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
630-828 |
3.97e-31 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 122.49 E-value: 3.97e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 630 VKEIGIRQKWETSESakSLAVPIGYKGKDDIVYLNLheKAHGPHGLLAGTTGSGKSEFLQTYILSLAVHFHPHEAAFLLI 709
Cdd:pfam01580 1 LLEVLESKPFDTDYS--RLPIALGKDISGNPEVFDL--KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 710 DYKGGGMAqPFRKMPHLLGT--ITNIEGSRnfsiRALASIKSELKKRQRLFDQYRVNHINDYTKLYKQGETDI------- 780
Cdd:pfam01580 77 DPKMGELS-AYEDIPHLLSVpvATDPKRAL----RALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLDGfgdvflv 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743684135 781 ---------------PMPHLFLISDEFAELK----SEEPDFIRELVS-AARIGRSLGVHLILATQKPG 828
Cdd:pfam01580 152 iygvhvmctagrwleILPYLVVIVDERAELRlaapKDSEMRVEDAIVrLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
613-879 |
4.80e-24 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 108.86 E-value: 4.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 613 NSIPETVTFLELFHAKEVKEigirqkwetseSAKSLAVPIGykgKD---DIVYLNLhEKAhgPHGLLAGTTGSGKSEFLQ 689
Cdd:COG1674 237 NKKRETVYLREVLESDEFQN-----------SKSPLPIALG---KDisgEPVVADL-AKM--PHLLIAGATGSGKSVCIN 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 690 TYILSLAVHFHPHEAAFLLIDYKgggMA--QPFRKMPHLLG-TITNIEGsrnfSIRALASIKSELKKRQRLFDQYRVNHI 766
Cdd:COG1674 300 AMILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVTDPKK----AANALKWAVREMERRYKLFAKAGVRNI 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 767 NDYTKLYKQGETDI-------PMPHLFLISDEFAELKSEEPDFIRELVsaARI---GRSLGVHLILATQKPG-----GII 831
Cdd:COG1674 373 AGYNEKVREAKAKGeeeeglePLPYIVVIIDELADLMMVAGKEVEEAI--ARLaqkARAAGIHLILATQRPSvdvitGLI 450
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 743684135 832 DdqiwSN--SR--FKVALKVqdasDSKEILKNSDAANItvTGRG---YLQVGNNE 879
Cdd:COG1674 451 K----ANipSRiaFAVSSKI----DSRTILDQGGAEKL--LGRGdmlFLPPGASK 495
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
3-122 |
1.46e-18 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 82.82 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 3 LLWVFYREHVQKVQLSelpPSQPITIGPDMKDTITV----GTLPLRQNaatlyrKETDRYDVFLGNNCAGELTIGNEMPC 78
Cdd:pfam12538 1 LLWVFYDDQYQKLNLD---DLKTVTIGNDEEHDVTIpsleGVIELKWD------EDGGQYLVYQGGEGLQTLEINKSFEV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 743684135 79 RIEEETMRLLLTPDQEESSVYFIGGKDEIVFSSEtEEADIYKEP 122
Cdd:pfam12538 72 KEDGKDLTLILVGEAPSTSVYYIGNRDEITISSE-EYADIVLQS 114
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
656-865 |
7.00e-17 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 87.06 E-value: 7.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 656 GKD---DIVYLNLhekAHGPHGLLAGTTGSGKSEFLQTYILSLAVHFHPHEAAFLLIDYKGGGMAQpFRKMPHLLG-TIT 731
Cdd:PRK10263 995 GKDiagEPVVADL---AKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV-YEGIPHLLTeVVT 1070
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 732 NIEGSRNfsirALASIKSELKKRQRLFDQYRVNHINDYTKlyKQGETD-----IP-------------------MPHLFL 787
Cdd:PRK10263 1071 DMKDAAN----ALRWCVNEMERRYKLMSALGVRNLAGYNE--KIAEADrmmrpIPdpywkpgdsmdaqhpvlkkEPYIVV 1144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 788 ISDEFAELKSEEPDFIRELVSA-ARIGRSLGVHLILATQKPG-GIIDDQIWSNSRFKVALKVQDASDSKEILKNSDAANI 865
Cdd:PRK10263 1145 LVDEFADLMMTVGKKVEELIARlAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESL 1224
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
206-1481 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 1879.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 206 KKYPQYRRTPRMVYDLPEDRVSFSFPSQESEQNNRGLWLVILPPVVMLIVMGVVAIIQPRGIFILVSLAMFMMTLITSTV 285
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 286 QYFREKNQRKKREEKRERVYKQYLESKRKELQTLSEKQLQVLTHHFPPFEKMKYLTSEISGRIWEKSLESRDFLMLRLGT 365
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 366 GTVPSSYEISMSGGDLANRdVDDLMEQSQHMQRVYKDIRHAPVTVDLQEGPMGLVGKPQIVKNEIHQLIGQLAFFNSYHD 445
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQR-KDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 446 LRFVFIFHEDEYKEWEWMKWLPQFQLPHMYAKGFIYNEQTRDQLLSSIYELLRERDL----EEDKEKKIFQPHFVFVITN 521
Cdd:TIGR03928 240 VQFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLalddANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 522 QQLIAEHVILEYIEGRHEHLGISAIIAAETKESLAENIHTLVRYINEDEGDILIQQKKAVQIPFKLDRHERTTNERFSRT 601
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHLDNEDLEEYSRT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 602 LRTLHHQVGMTNSIPETVTFLELFHAKEVKEIGIRQKWETSESAKSLAVPIGYKGKDDIVYLNLHEKAHGPHGLLAGTTG 681
Cdd:TIGR03928 400 LAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTTG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 682 SGKSEFLQTYILSLAVHFHPHEAAFLLIDYKGGGMAQPFRKMPHLLGTITNIEGSRnfSIRALASIKSELKKRQRLFDQY 761
Cdd:TIGR03928 480 SGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQ--SMRALASIKAELKKRQRLFGEN 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 762 RVNHINDYTKLYKQGETDIPMPHLFLISDEFAELKSEEPDFIRELVSAARIGRSLGVHLILATQKPGGIIDDQIWSNSRF 841
Cdd:TIGR03928 558 NVNHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRF 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 842 KVALKVQDASDSKEILKNSDAANITVTGRGYLQVGNNEVYEQFQSAWSGAPYMEDVYGTED-DIAIVTDTGLIPLS---- 916
Cdd:TIGR03928 638 KLALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEeDIYMINDLGQYELLnedl 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 917 EVDADDAAKKDAPAEIEAVVEEIERIQNEMGIEKLPSPWLPPLAERIPRTLYPAQEKDR----------FFIACVDEPDQ 986
Cdd:TIGR03928 718 SGLKRKKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKlwskpkeplqATIGLLDDPEL 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 987 QRQAPLAYTMMDDGNIGIFGSSGYGKSVAAITFLMNFAEGYTPEELHMYIFDFGNGTLLPLAKLPHTADYFLMDQMRKIE 1066
Cdd:TIGR03928 798 QSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKIE 877
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1067 KFMIRIKEEIERRKRLFREKEVSHIKMYNSLSEEELPFIFITIDNFDIVKDE--MHELETEFIQISRDGQSLGIYFLLTA 1144
Cdd:TIGR03928 878 KLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEpfYEDFEELLIQLAREGASLGIYLVMTA 957
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1145 TRVNAVRQSLLNNIKTKVVHYLMDQSEGYSIYGRPPFSLEPIPGRVMIQKEELYFAQMFLPAEAENDLEMFQTLKADVKA 1224
Cdd:TIGR03928 958 GRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQK 1037
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1225 LAERHAGTAgPDPIPMLPDMLTAGEF--SLRLGPEQEPFRIPVGLHEEKVSPVYFDLGKNKHCLILGQTQRGKTNILKVM 1302
Cdd:TIGR03928 1038 MNEAWTGER-PKPIPMVPEELSLEEFreRYEVRKILEEGSIPIGLDEETVEPVYIDLTENPHLLIVGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1303 LNHLLREGTERVGLFDSIDRGLSQYAQETKV-SYLDTKEDVRQWIETAEAIFTEREAQYTQAVKNGDVhKLSFSPVVLMA 1381
Cdd:TIGR03928 1117 LKTLAKQEKEKIGLIDSIDRGLLAYRDLKEVaTYIEEKEDLKEILAELKEEIELREAAYKEALQNETG-EPAFKPILLII 1195
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1382 DGITRFQQTIDTAIQDKLAMFMKSYAHVGFSFIPAGNHSEFSKGYDSLTTEMKQIRHAMLLVKKSEQNVIPLPYQRQEPD 1461
Cdd:TIGR03928 1196 DDLEDFIQRTDLEIQDILALIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQLRTGILGMRKSDQSFFKLPFTRSEKE 1275
|
1290 1300
....*....|....*....|
gi 743684135 1462 IQPGFGYLVENGKEQKIQIP 1481
Cdd:TIGR03928 1276 LEPGEGYFVVNGKYQKIKIP 1295
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
243-893 |
1.42e-83 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 288.80 E-value: 1.42e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 243 WLVILPPVVMLIVMG--VVAIIQPRG-----IFILVSLAMFMMTLitSTVQYFREKNQRKKREEKRERV-YKQYLESKRK 314
Cdd:TIGR03924 3 LLQKLLPVVMVVAVVgmVVMMFASGGrqrnpMFLIFPLMMLVSML--GMLAGGRGGGGKKTPELDEDRRdYLRYLDQLRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 315 ELQTLSEKQLQVLTHHFPPFEKMkyLTSEISGRIWEKSLESRDFLMLRLGTGTVPSSYEISMSGgdlaNRDVDDL---ME 391
Cdd:TIGR03924 81 EVRETAAAQRAALEWRHPDPDTL--WALVGTPRMWERRPGDPDFLEVRVGVGVQPLATRLVVPE----TGPVEDLepvTA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 392 QS-QHMQRVYKDIRHAPVTVDLQEGPM-GLVGKPQIVKNEIHQLIGQLAFFNSYHDLRFVFIFHEDEyKEWEWMKWLPQF 469
Cdd:TIGR03924 155 VAlRRFLRAHSTVPDLPVAVSLRGFARiSLVGDRDQARALARAMLCQLAVFHGPDDVGIAVVTSDPD-RDWDWLKWLPHN 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 470 QLPHMY-AKG---FIYNeqTRDQLLSSIYELLRERDLEEDKEKKIfQPHFVFVITNQQLIA-EHVILEyiEGRHehlGIS 544
Cdd:TIGR03924 234 QHPTRFdAAGparLVYT--SLAELEAALAELLADRGRFSPDDAAS-LPHLVVVVDGGDLPGwEDLIGE--SGLD---GVT 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 545 AIIAAETKESLAEniHTLVRYINEDeGDILIQQKKAVQIPF-KLDRHERTTNERFSRTLRTLHHQVGMTNSIPETV--TF 621
Cdd:TIGR03924 306 VIDLGGSLPGLPD--RRGLRLVVEA-DRLDARTADGVEEFGvAPDQLSIAEAEALARRLARWRAATAGTVDAPLTGarDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 622 LELFHAKEVKEIGIRQKWETSESAKSLAVPIGYKGKDDIVYLNLHEKAH---GPHGLLAGTTGSGKSEFLQTYILSLAVH 698
Cdd:TIGR03924 383 LELLGIGDPATLDVDRLWRPRPGRDRLRVPIGVGDDGEPVELDLKESAEggmGPHGLCIGATGSGKSELLRTLVLGLAAT 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 699 FHPHEAAFLLIDYKGGGMAQPFRKMPHLLGTITNIEGSRNFSIRALASIKSELKKRQRLFDQY-RVNHINDYTKLYKQGE 777
Cdd:TIGR03924 463 HSPEQLNLVLVDFKGGATFLGLEGLPHVSAVITNLADEAPLVDRMQDALAGEMNRRQELLRAAgNFANVAEYEKARAAGA 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 778 TDIPMPHLFLISDEFAELKSEEPDFIRELVSAARIGRSLGVHLILATQKpggiIDD----QIWSNSRFKVALKVQDASDS 853
Cdd:TIGR03924 543 DLPPLPALFVVVDEFSELLSQHPDFADLFVAIGRLGRSLGVHLLLASQR----LDEgrlrGLESHLSYRIGLKTFSASES 618
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 743684135 854 KEILKNSDAANITVT-GRGYLQVGnNEVYEQFQSAWSGAPY 893
Cdd:TIGR03924 619 RAVLGVPDAYHLPSTpGAGYLKVD-TAEPVRFRAAYVSGPY 658
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
954-1328 |
2.88e-49 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 185.20 E-value: 2.88e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 954 PWLPPLAERIP-------------RTLYPAQEKDRFFIACVDEPDQQRQAPLAYTM-MDDGNIGIFGSSGYGKSVAAITF 1019
Cdd:TIGR03925 20 VWLPPLPEPPAlddllprldvdpwRVDYGQRGRLTVPVGIVDRPFEQRQDPLVVDLsGAAGHVAIVGAPQSGKSTALRTL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1020 LMNFAEGYTPEELHMYIFDFGNGTLLPLAKLPHTADYFLMDQMRKIEKFMIRIKEEIERRKRLFREKEVSHIKMYNSL-- 1097
Cdd:TIGR03925 100 ILALALTHTPEEVQFYCLDFGGGGLASLADLPHVGGVAGRLDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQYRARra 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1098 --SEEELPF--IFITIDNFDIVKDEMHELETEFIQISRDGQSLGIYFLLTATRVNAVRQSLLNNIKTKVVHYLMDQSEgy 1173
Cdd:TIGR03925 180 agRLPEDPFgdVFLVIDGWGTLRQDFEDLEDKVTDLAARGLAYGVHVVLTASRWSEIRPALRDLIGTRIELRLGDPMD-- 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1174 SIYGRPPFSLEP--IPGR-VMIQKEELYFAqmfLPAEAENDLEMFQTLKADVKALAERHAGTAGPdPIPMLPDMLTAGEf 1250
Cdd:TIGR03925 258 SEIDRRAAARVPagRPGRgLTPDGLHMLIA---LPRLDGIASVDDLGTRGLVAVIRDVWGGPPAP-PVRLLPARLPLSA- 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1251 sLRLGPEQEPFRIPVGLHEEKVSPVYFDLGKNKHCLILGQTQRGKTNILKVMLNHLLREGTE----------RVGLFDSI 1320
Cdd:TIGR03925 333 -LPAGGGAPRLRVPLGLGESDLAPVYVDFAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPdqarlvvvdyRRTLLGAV 411
|
....*....
gi 743684135 1321 DRG-LSQYA 1328
Cdd:TIGR03925 412 PEDyLAGYA 420
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
630-828 |
3.97e-31 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 122.49 E-value: 3.97e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 630 VKEIGIRQKWETSESakSLAVPIGYKGKDDIVYLNLheKAHGPHGLLAGTTGSGKSEFLQTYILSLAVHFHPHEAAFLLI 709
Cdd:pfam01580 1 LLEVLESKPFDTDYS--RLPIALGKDISGNPEVFDL--KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 710 DYKGGGMAqPFRKMPHLLGT--ITNIEGSRnfsiRALASIKSELKKRQRLFDQYRVNHINDYTKLYKQGETDI------- 780
Cdd:pfam01580 77 DPKMGELS-AYEDIPHLLSVpvATDPKRAL----RALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLDGfgdvflv 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743684135 781 ---------------PMPHLFLISDEFAELK----SEEPDFIRELVS-AARIGRSLGVHLILATQKPG 828
Cdd:pfam01580 152 iygvhvmctagrwleILPYLVVIVDERAELRlaapKDSEMRVEDAIVrLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
613-879 |
4.80e-24 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 108.86 E-value: 4.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 613 NSIPETVTFLELFHAKEVKEigirqkwetseSAKSLAVPIGykgKD---DIVYLNLhEKAhgPHGLLAGTTGSGKSEFLQ 689
Cdd:COG1674 237 NKKRETVYLREVLESDEFQN-----------SKSPLPIALG---KDisgEPVVADL-AKM--PHLLIAGATGSGKSVCIN 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 690 TYILSLAVHFHPHEAAFLLIDYKgggMA--QPFRKMPHLLG-TITNIEGsrnfSIRALASIKSELKKRQRLFDQYRVNHI 766
Cdd:COG1674 300 AMILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVTDPKK----AANALKWAVREMERRYKLFAKAGVRNI 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 767 NDYTKLYKQGETDI-------PMPHLFLISDEFAELKSEEPDFIRELVsaARI---GRSLGVHLILATQKPG-----GII 831
Cdd:COG1674 373 AGYNEKVREAKAKGeeeeglePLPYIVVIIDELADLMMVAGKEVEEAI--ARLaqkARAAGIHLILATQRPSvdvitGLI 450
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 743684135 832 DdqiwSN--SR--FKVALKVqdasDSKEILKNSDAANItvTGRG---YLQVGNNE 879
Cdd:COG1674 451 K----ANipSRiaFAVSSKI----DSRTILDQGGAEKL--LGRGdmlFLPPGASK 495
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
648-1151 |
4.48e-23 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 105.46 E-value: 4.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 648 LAVPIG-----YKGKDDIVYLNLHekAHGPHGLLAGTTGSGKSEFLQTYILSLAVHFHPHEAAFLLIDYKGGGMAQpFRK 722
Cdd:TIGR03925 53 LTVPVGivdrpFEQRQDPLVVDLS--GAAGHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLAS-LAD 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 723 MPHLLGTITNIEGSRnfSIRALASIKSELKKRQRLFDQYRVNHINDYTKLYKQGE-TDIPMPHLFLISDEFAELKSEEPD 801
Cdd:TIGR03925 130 LPHVGGVAGRLDPER--VRRTVAEVEGLLRRRERLFRTHGIDSMAQYRARRAAGRlPEDPFGDVFLVIDGWGTLRQDFED 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 802 FIRELVSAARIGRSLGVHLILATQKPGGI---IDDQIWSnsrfKVALKVQDASDSkEILKNSdAANIT--VTGRGYLQVG 876
Cdd:TIGR03925 208 LEDKVTDLAARGLAYGVHVVLTASRWSEIrpaLRDLIGT----RIELRLGDPMDS-EIDRRA-AARVPagRPGRGLTPDG 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 877 nnevyEQFQSAWSGApymedvygteDDIAIVTDTGLIPLSEVdaddaakkdapaeieavveeierIQNEMGIEKLPSpwL 956
Cdd:TIGR03925 282 -----LHMLIALPRL----------DGIASVDDLGTRGLVAV-----------------------IRDVWGGPPAPP--V 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 957 PPLAERIPRTLYPAQ---EKDRFFIAcVDEPDqqrQAPLAYTMMDDGNIGIFGSSGYGKSVAAITFLMNFAEGYTPEELH 1033
Cdd:TIGR03925 322 RLLPARLPLSALPAGggaPRLRVPLG-LGESD---LAPVYVDFAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDQAR 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1034 MYIFDFgNGTLLPLAKLPHTADYFLMDQmrKIEKFMIRIKEEIERRkrlfREKEvshikmynSLSEEEL--------PFI 1105
Cdd:TIGR03925 398 LVVVDY-RRTLLGAVPEDYLAGYAATSA--ALTELIAALAALLERR----LPGP--------DVTPQQLrarswwsgPEI 462
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 743684135 1106 FITIDNFDIVKDEM----HELeTEFIQISRDgqsLGIYFLLTATRVNAVR 1151
Cdd:TIGR03925 463 YVVVDDYDLVATGSgnplAPL-VELLPHARD---IGLHVVVARRSGGAAR 508
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
3-122 |
1.46e-18 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 82.82 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 3 LLWVFYREHVQKVQLSelpPSQPITIGPDMKDTITV----GTLPLRQNaatlyrKETDRYDVFLGNNCAGELTIGNEMPC 78
Cdd:pfam12538 1 LLWVFYDDQYQKLNLD---DLKTVTIGNDEEHDVTIpsleGVIELKWD------EDGGQYLVYQGGEGLQTLEINKSFEV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 743684135 79 RIEEETMRLLLTPDQEESSVYFIGGKDEIVFSSEtEEADIYKEP 122
Cdd:pfam12538 72 KEDGKDLTLILVGEAPSTSVYYIGNRDEITISSE-EYADIVLQS 114
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
656-865 |
7.00e-17 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 87.06 E-value: 7.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 656 GKD---DIVYLNLhekAHGPHGLLAGTTGSGKSEFLQTYILSLAVHFHPHEAAFLLIDYKGGGMAQpFRKMPHLLG-TIT 731
Cdd:PRK10263 995 GKDiagEPVVADL---AKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV-YEGIPHLLTeVVT 1070
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 732 NIEGSRNfsirALASIKSELKKRQRLFDQYRVNHINDYTKlyKQGETD-----IP-------------------MPHLFL 787
Cdd:PRK10263 1071 DMKDAAN----ALRWCVNEMERRYKLMSALGVRNLAGYNE--KIAEADrmmrpIPdpywkpgdsmdaqhpvlkkEPYIVV 1144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 788 ISDEFAELKSEEPDFIRELVSA-ARIGRSLGVHLILATQKPG-GIIDDQIWSNSRFKVALKVQDASDSKEILKNSDAANI 865
Cdd:PRK10263 1145 LVDEFADLMMTVGKKVEELIARlAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESL 1224
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
1000-1146 |
5.77e-15 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 75.49 E-value: 5.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1000 GNIGIFGSSGYGKSVAAITFLMNFAEGYTPEELHMYIFDFGNGTLLPLAKLPHTADYFLMDQMRKIEKFMIRIKEEIERR 1079
Cdd:pfam01580 39 VHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYEDIPHLLSVPVATDPKRALRALEWLVDEMERR 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1080 KRLFREKEVSHIKMYNSL---------------------------SEEELPFIFITIDNF-----DIVKDEMHELETEFI 1127
Cdd:pfam01580 119 YALFRALGVRSIAGYNGEiaedpldgfgdvflviygvhvmctagrWLEILPYLVVIVDERaelrlAAPKDSEMRVEDAIV 198
|
170
....*....|....*....
gi 743684135 1128 QISRDGQSLGIYFLLTATR 1146
Cdd:pfam01580 199 RLAQKGRAAGIHLLLATQR 217
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
1006-1151 |
6.65e-11 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 66.92 E-value: 6.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1006 GSSGYGKSvaaiTFLMNFAEG----YTPEELHMYIFDF-GNGTLLPLAKLPHTA--------DYFLMDQMRKIekfmirI 1072
Cdd:TIGR03924 442 GATGSGKS----ELLRTLVLGlaatHSPEQLNLVLVDFkGGATFLGLEGLPHVSavitnladEAPLVDRMQDA------L 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1073 KEEIERRKRLFREK-EVSHIKMYNSLSE-----EELPFIFITIDNFDIV---KDEMHELeteFIQISRDGQSLGIYFLLT 1143
Cdd:TIGR03924 512 AGEMNRRQELLRAAgNFANVAEYEKARAagadlPPLPALFVVVDEFSELlsqHPDFADL---FVAIGRLGRSLGVHLLLA 588
|
....*...
gi 743684135 1144 ATRVNAVR 1151
Cdd:TIGR03924 589 SQRLDEGR 596
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
649-856 |
1.27e-07 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 55.77 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 649 AVPIG-YKGKDDIVYLNLhEKAHGPHGLLAGTTGSGKSeflqTYILSLAVHFHPHEAAFLLIDYKG--GGMAQPFRKMPH 725
Cdd:COG0433 25 GILIGkLLSPGVPVYLDL-DKLLNRHILILGATGSGKS----NTLQVLLEELSRAGVPVLVFDPHGeySGLAEPGAERAD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 726 LlgTITNIEGSRNFSIRA--------------------------------------------LASIKSELKKRQRLFDQY 761
Cdd:COG0433 100 V--GVFDPGAGRPLPINPwdlfataselgplllsrldlndtqrgvlrealrladdkglllldLKDLIALLEEGEELGEEY 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 762 -------------RVNHINDYTKLYKQGETDI-----------------------------------------------P 781
Cdd:COG0433 178 gnvsaasagallrRLESLESADGLFGEPGLDLedllrtdgrvtvidlsglpeelqstfvlwllrelfearpevgdaddrK 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743684135 782 MPHLFLIsDEFAELKSEEPDFIRELVS-AARIGRSLGVHLILATQKPGGiIDDQIWSNSRFKVALKVQDASDSKEI 856
Cdd:COG0433 258 LPLVLVI-DEAHLLAPAAPSALLEILErIAREGRKFGVGLILATQRPSD-IDEDVLSQLGTQIILRLFNPRDQKAV 331
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
783-856 |
2.65e-05 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 48.44 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 783 PHLFLISDEFAELKseepdFIRELVSAARIGRSLGVHLILATQKPGGIID-------DQIWSNSRFKVALKVQDASDSKE 855
Cdd:COG3505 247 RPVLLLLDEFANLG-----RLPSLETLLATGRGYGIRLVLILQSLAQLEAiygeegaETILGNCGTKIFLGVNDPETAEY 321
|
.
gi 743684135 856 I 856
Cdd:COG3505 322 L 322
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
1262-1310 |
3.64e-05 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 48.06 E-value: 3.64e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 743684135 1262 RIPVGLHEEKVSPVYFDLGK--NKHCLILGQTQRGKTNILKVMLNHLLREG 1310
Cdd:COG0433 25 GILIGKLLSPGVPVYLDLDKllNRHILILGATGSGKSNTLQVLLEELSRAG 75
|
|
| DUF87 |
pfam01935 |
Helicase HerA, central domain; This entry represents the central domain found in archaeal ... |
1263-1318 |
4.18e-04 |
|
Helicase HerA, central domain; This entry represents the central domain found in archaeal proteins such as DNA double-strand break repair helicase HerA (EC:3.6.4.12). HerA is a helicase which is able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This domain includes the the central RecA-like catalytic core and a flanking four-helix bundle. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Pssm-ID: 376671 [Multi-domain] Cd Length: 220 Bit Score: 43.51 E-value: 4.18e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 743684135 1263 IPVG-LHEEKVSPVYFDLGK--NKHCLILGQTQRGKTNILKVMLNHLLREGTERVGLFD 1318
Cdd:pfam01935 1 IEIGrLLDGSEVPVYLDVNKlvSRHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFD 59
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
784-856 |
8.20e-04 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 40.71 E-value: 8.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 784 HLFLISDEFAELkSEEPDFiRELVSAariGRSLGVHLILATQKPGGIID-------DQIWSNSRFKVALKVQDASDSKEI 856
Cdd:pfam12696 1 PVLFVLDEFANL-GKIPDL-EKLIST---GRSRGISLMLILQSIAQLEElygkdgaETILGNCNTKVFLGGGDEETAKYL 75
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
660-741 |
1.18e-03 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 43.40 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 660 IVYLNLHEKAHGPHGLLAGTTGSGKSEFLQTYILSLAVhfhpHEAAFLLIDYKGGgmaqpFRKMPHLL-GTITNIEGSRN 738
Cdd:COG3451 193 PVFFDFHDGLDNGNTLILGPSGSGKSFLLKLLLLQLLR----YGARIVIFDPGGS-----YEILVRALgGTYIDLSPGSP 263
|
...
gi 743684135 739 FSI 741
Cdd:COG3451 264 TGL 266
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
1235-1383 |
3.79e-03 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 41.52 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1235 PDPIPmLPDMLTA--GEFSLRLGPEQEPFRIPVGL----HEEKVSPVYFDL-GKNKHCLILGQTQRGKTNILK-VMLNHL 1306
Cdd:TIGR03925 26 PEPPA-LDDLLPRldVDPWRVDYGQRGRLTVPVGIvdrpFEQRQDPLVVDLsGAAGHVAIVGAPQSGKSTALRtLILALA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743684135 1307 LREGTERVGlFDSIDRG---LSQYAQETKV----SYLDTkEDVRQWIETAEAIFTERE-----------AQYTQAVKNGD 1368
Cdd:TIGR03925 105 LTHTPEEVQ-FYCLDFGgggLASLADLPHVggvaGRLDP-ERVRRTVAEVEGLLRRRErlfrthgidsmAQYRARRAAGR 182
|
170
....*....|....*
gi 743684135 1369 VHKLSFSPVVLMADG 1383
Cdd:TIGR03925 183 LPEDPFGDVFLVIDG 197
|
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| |
