NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|74310594|ref|YP_313727|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Cylindrophis ruffus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009571)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 3.23e-48

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 149.65  E-value: 3.23e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMV-TKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSMN 79
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTqTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 74310594   80 TNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWA 113
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 3.23e-48

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 149.65  E-value: 3.23e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMV-TKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSMN 79
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTqTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 74310594   80 TNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWA 113
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
27-111 5.73e-23

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 85.17  E-value: 5.73e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    27 KPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMNTNPPTTTITLTMML-LILLTLGLAYEW 105
Cdd:pfam00507  11 RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRELGWFGFVEMLIfIAILLVGLVYAW 88


                  ....*.
gi 74310594   106 YQGGLE 111
Cdd:pfam00507  89 KKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 27-112 6.22e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 77.85  E-value: 6.22e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594  27 KPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMN-TNPPTTTITLTMMLLILLTLGLAYEW 105
Cdd:COG0838  33 RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVfRELGWFGLIEMLVFIAILLVGLIYAW 110


                ....*..
gi 74310594 106 YQGGLEW 112
Cdd:COG0838 111 KKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 3.23e-48

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 149.65  E-value: 3.23e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMV-TKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSMN 79
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTqTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 74310594   80 TNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWA 113
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-114 2.11e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 122.41  E-value: 2.11e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    3 LIALLMISLSVATLLYMINTYM-VTKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSMNTN 81
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLpLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 74310594   82 PPTTTITLTMMLLILLTLGLAYEWYQGGLEWAD 114
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-114 2.89e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 119.64  E-value: 2.89e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLI-ALLMISLSVATLLYMINTYM-VTKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSM 78
Cdd:MTH00136   1 MNLItTILTITIALSLILAIVSFWLpQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 74310594   79 NTNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWAD 114
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-114 2.07e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 117.35  E-value: 2.07e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMI-------NTYMvtkpdiNKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLP 73
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIafwlpqlNIYS------EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLP 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 74310594   74 IPWSMNTNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWAD 114
Cdd:MTH00106  75 LPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-114 2.90e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 109.30  E-value: 2.90e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMVTK-PDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSMN 79
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRsPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 74310594   80 TNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWAD 114
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-112 4.28e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 101.13  E-value: 4.28e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLM-ISLSVATLLYMINTY-MVTKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSM 78
Cdd:MTH00203   1 MNLIMLFFlIALLLSLILLFIAFWlPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 74310594   79 NTNPPttTITLTMMLLILLTLGLAYEWYQGGLEW 112
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-112 1.86e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 89.45  E-value: 1.86e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    2 NLIALLMISLSVATLLYMINTYMVTKPDIN--KLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSMN 79
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDreKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 74310594   80 TNPPTTTITLTMMLLILLTLGLAYEWYQGGLEW 112
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-113 3.01e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 89.15  E-value: 3.01e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISL--SVATLLYMINTYMVTKpDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSM 78
Cdd:MTH00148   3 SILLSLLFALIlsPVLLLLGLVLSKRSYS-DREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 74310594   79 NTNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWA 113
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
27-111 5.73e-23

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 85.17  E-value: 5.73e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    27 KPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMNTNPPTTTITLTMML-LILLTLGLAYEW 105
Cdd:pfam00507  11 RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRELGWFGFVEMLIfIAILLVGLVYAW 88


                  ....*.
gi 74310594   106 YQGGLE 111
Cdd:pfam00507  89 KKGALE 94
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 1.82e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 79.27  E-value: 1.82e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMVTKP--DINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWSM 78
Cdd:MTH00202   2 LLILFMSILSILISSLLFLVSWMLSFRSlmDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 74310594   79 NTNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWA 113
Cdd:MTH00202  82 KSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-112 5.68e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 78.18  E-value: 5.68e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMVTK-PDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMN 79
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKqPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLF--PWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 74310594   80 TNP-PTTTITLTMMLLILLTLGLAYEWYQGGLEW 112
Cdd:MTH00018  79 YNQiAPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 27-112 6.22e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 77.85  E-value: 6.22e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594  27 KPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMN-TNPPTTTITLTMMLLILLTLGLAYEW 105
Cdd:COG0838  33 RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVfRELGWFGLIEMLVFIAILLVGLIYAW 110


                ....*..
gi 74310594 106 YQGGLEW 112
Cdd:COG0838 111 KKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-113 1.61e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 77.21  E-value: 1.61e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIAL-LMISLSVATLLYMINTYMVTKP--DINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIPWS 77
Cdd:MTH00012   1 MSLMMIpMMISLILPPLVLGAAWVLAARStaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 74310594   78 MNTNPPTTTITLTMMLLILLTLGLAYEWYQGGLEWA 113
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-112 3.95e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 75.90  E-value: 3.95e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMVTK-PDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMN 79
Cdd:MTH00055   6 LGIFILLLFSIGLSTVISGASYIVGVKqPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLF--PWCVV 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 74310594   80 TNP-PTTTITLTMMLLILLTLGLAYEWYQGGLEW 112
Cdd:MTH00055  84 YNQiGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 27-113 3.03e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 73.74  E-value: 3.03e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594   27 KPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLlpIPWSMNTNP-PTTTITLTMMLLILLTLGLAYEW 105
Cdd:PRK06602  36 APDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREiGWLGFVEAMIFILVLLVGLVYLW 113


                 ....*...
gi 74310594  106 YQGGLEWA 113
Cdd:PRK06602 114 RKGALDWE 121
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 4-112 1.31e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 72.27  E-value: 1.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    4 IALLMISLSVATLLYMINTymvTKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMNTNP- 82
Cdd:MTH00030  18 IILLLVSISFTLGNSRIGL---TKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLF--PWSIVFNQl 92

                         90       100       110
                 ....*....|....*....|....*....|
gi 74310594   83 PTTTITLTMMLLILLTLGLAYEWYQGGLEW 112
Cdd:MTH00030  93 NLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-72 6.19e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 57.21  E-value: 6.19e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 74310594    1 MNLIALLMISLSVATLLYMINTYMVTK-PDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLL 72
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKkFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-112 9.92e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 54.29  E-value: 9.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594   32 KLSPYECGFDPLGDARSP--ISIQFFLVAILFILFDLEIILLlpIPWSMNTNP-PTTTITLTMMLLILLTLGLAYEWYQG 108
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFL--YPWAVSFDAlGVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....
gi 74310594  109 GLEW 112
Cdd:PRK07928 115 GLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
32-112 1.07e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 51.98  E-value: 1.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594   32 KLSPYECGFDPLGDARSpISIQFFLVAILFILFDLEIILLLpiPWSMNTNP-PTTTITLTMMLLILLTLGLAYEWYQGGL 110
Cdd:PRK08489  47 KLAIYECGPEPVKQPNR-ISSHFYIMALLFILFDVEIVFMF--PWAVDFKLlGLFGLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 74310594  111 EW 112
Cdd:PRK08489 124 EW 125
ndhC CHL00022
NADH dehydrogenase subunit 3
 5-112 7.86e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 46.90  E-value: 7.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594    5 ALLMISLSVATLLYMINTYMV-TKPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMNTNP- 82
Cdd:CHL00022  12 AFLIISSLIPILAFLISGLLApISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVl 89

                         90       100       110
                 ....*....|....*....|....*....|
gi 74310594   83 PTTTITLTMMLLILLTLGLAYEWYQGGLEW 112
Cdd:CHL00022  90 GVSAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
27-112 7.08e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 41.65  E-value: 7.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74310594   27 KPDINKLSPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLpiPWSMNTNP-PTTTITLTMMLLILLTLGLAYEW 105
Cdd:PRK07756  37 KPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLY--PWAVAYDKlGLFALIEMLIFVVMLLVGLAYAW 114


                 ....*..
gi 74310594  106 YQGGLEW 112
Cdd:PRK07756 115 KKKVLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-75 1.20e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.20e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 74310594   34 SPYECGFDPLGDARSPISIQFFLVAILFILFDLEIILLLPIP 75
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH