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Conserved domains on  [gi|74199576|dbj|BAE41468|]
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unnamed protein product [Mus musculus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 1000871)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0046872|GO:0003723

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
35-922 1.91e-145

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 452.80  E-value: 1.91e-145
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576  35 YLIDSRWFKqwkKYVGFDSWDmynvGEhnlFPGPIdNSGLFSDPESQTLKEHLIDELDYVLVPAEAWNKLLNWYGcVEGq 114
Cdd:COG5560  48 VIFAYAWYE---GMFDRASCD----GG---SPGPI-VQGPIVDFEPESLKKSLREGIDYSIISGAVWQLLVRWYG-LAG- 114
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 115 qPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCH--------FSKADTIATIEKEMRKLFNIPAErETRLWN- 185
Cdd:COG5560 115 -LITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLghdpvphsASSHGTLRDLSERVMNAFVDPSD-DFRLWDv 192
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 186 --KYMSNTYEQLSKLDN--------------TIQDAGLYQGqVLVIEPQNEDGTWPRQSLQSKSSTAPSRnfttsskpsa 249
Cdd:COG5560 193 vpEIMGLRLGLDSFFRRyrvlasdgrvlhplTRLELFEDRS-VLLLSKITRNPDWLVDSIVDDHNRSINK---------- 261
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 250 spycsvsasliangdstnssgmhssgvsrggsgfsasyncqeppsphiQPGLCGLGNLGNTCFMNSALQCLSNTAPLTEY 329
Cdd:COG5560 262 ------------------------------------------------EAGTCGLRNLGNTCYMNSALQCLMHTWELRDY 293
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 330 FLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDL 409
Cdd:COG5560 294 FLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDL 373
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 410 NRVKKKPYLE-PKDANGRPDAV--VAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKD 486
Cdd:COG5560 374 NRIIKKPYTSkPDLSPGDDVVVkkKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMV 453
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 487 RIMEVFLVPADPQCRPIQ-YRVTVPLMGAISDLCEALSKLSGIAaeNMVVTDVYNHRFHKIF-QMDEGLSH-ITPRDDIF 563
Cdd:COG5560 454 WKHTIVVFPESGRRQPLKiELDASSTIRGLKKLVDAEYGKLGCF--EIKVMCIYYGGNYNMLePADKVLLQdIPQTDFVY 531
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 564 VYEvcnTSMDGsecITLPVYfrekKSRPSSASSGAVLYGQPLLvsvpkhKLTLeslyqavcdRISRYIKQPLPDEFlssp 643
Cdd:COG5560 532 LYE---TNDNG---IEVPVV----HLRIEKGYKSKRLFGDPFL------QLNV---------LIKASIYDKLVKEF---- 582
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 644 lepgacngsrssyegdeeeemdhqeegkEQLSEVEGSGEDDQGDDHSESAQKVKgqpRHKRLFTFSLVNSCGTADINSLA 723
Cdd:COG5560 583 ----------------------------EELLVLVEMKKTDVDLVSEQVRLLRE---ESSPSSWLKLETEIDTKREEQVE 631
                       730       740       750       760       770       780       790       800
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 724 TDGkLLKLNSRSTLAIDWdSETRSLYFDEQESEACEKHLSMSQPQkkkkaaVALRECIELFTTMETLGEHDPWYCPTCKK 803
Cdd:COG5560 632 EEG-QMNFNDAVVISCEW-EEKRYLSLFSYDPLWTIREIGAAERT------ITLQDCLNEFSKPEQLGLSDSWYCPGCKE 703
                       810       820       830       840       850       860       870       880
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 804 HQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGAMGVGHYTA 883
Cdd:COG5560 704 FRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTA 783
                       890       900       910
                ....*....|....*....|....*....|....*....
gi 74199576 884 YAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRR 922
Cdd:COG5560 784 YARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
35-922 1.91e-145

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 452.80  E-value: 1.91e-145
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576  35 YLIDSRWFKqwkKYVGFDSWDmynvGEhnlFPGPIdNSGLFSDPESQTLKEHLIDELDYVLVPAEAWNKLLNWYGcVEGq 114
Cdd:COG5560  48 VIFAYAWYE---GMFDRASCD----GG---SPGPI-VQGPIVDFEPESLKKSLREGIDYSIISGAVWQLLVRWYG-LAG- 114
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 115 qPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCH--------FSKADTIATIEKEMRKLFNIPAErETRLWN- 185
Cdd:COG5560 115 -LITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLghdpvphsASSHGTLRDLSERVMNAFVDPSD-DFRLWDv 192
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 186 --KYMSNTYEQLSKLDN--------------TIQDAGLYQGqVLVIEPQNEDGTWPRQSLQSKSSTAPSRnfttsskpsa 249
Cdd:COG5560 193 vpEIMGLRLGLDSFFRRyrvlasdgrvlhplTRLELFEDRS-VLLLSKITRNPDWLVDSIVDDHNRSINK---------- 261
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 250 spycsvsasliangdstnssgmhssgvsrggsgfsasyncqeppsphiQPGLCGLGNLGNTCFMNSALQCLSNTAPLTEY 329
Cdd:COG5560 262 ------------------------------------------------EAGTCGLRNLGNTCYMNSALQCLMHTWELRDY 293
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 330 FLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDL 409
Cdd:COG5560 294 FLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDL 373
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 410 NRVKKKPYLE-PKDANGRPDAV--VAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKD 486
Cdd:COG5560 374 NRIIKKPYTSkPDLSPGDDVVVkkKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMV 453
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 487 RIMEVFLVPADPQCRPIQ-YRVTVPLMGAISDLCEALSKLSGIAaeNMVVTDVYNHRFHKIF-QMDEGLSH-ITPRDDIF 563
Cdd:COG5560 454 WKHTIVVFPESGRRQPLKiELDASSTIRGLKKLVDAEYGKLGCF--EIKVMCIYYGGNYNMLePADKVLLQdIPQTDFVY 531
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 564 VYEvcnTSMDGsecITLPVYfrekKSRPSSASSGAVLYGQPLLvsvpkhKLTLeslyqavcdRISRYIKQPLPDEFlssp 643
Cdd:COG5560 532 LYE---TNDNG---IEVPVV----HLRIEKGYKSKRLFGDPFL------QLNV---------LIKASIYDKLVKEF---- 582
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 644 lepgacngsrssyegdeeeemdhqeegkEQLSEVEGSGEDDQGDDHSESAQKVKgqpRHKRLFTFSLVNSCGTADINSLA 723
Cdd:COG5560 583 ----------------------------EELLVLVEMKKTDVDLVSEQVRLLRE---ESSPSSWLKLETEIDTKREEQVE 631
                       730       740       750       760       770       780       790       800
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 724 TDGkLLKLNSRSTLAIDWdSETRSLYFDEQESEACEKHLSMSQPQkkkkaaVALRECIELFTTMETLGEHDPWYCPTCKK 803
Cdd:COG5560 632 EEG-QMNFNDAVVISCEW-EEKRYLSLFSYDPLWTIREIGAAERT------ITLQDCLNEFSKPEQLGLSDSWYCPGCKE 703
                       810       820       830       840       850       860       870       880
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 804 HQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGAMGVGHYTA 883
Cdd:COG5560 704 FRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTA 783
                       890       900       910
                ....*....|....*....|....*....|....*....
gi 74199576 884 YAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRR 922
Cdd:COG5560 784 YARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
775-920 3.98e-59

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 202.13  E-value: 3.98e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 775 VALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFV 854
Cdd:cd02674  84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74199576 855 CDRSAR-PYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQ 920
Cdd:cd02674 164 DTRSFTgPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
302-485 1.18e-51

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 183.80  E-value: 1.18e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   302 CGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPlgmKGEIAEAYAELIKQMWSG-RDTHVAPRMFKTQVG 380
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKALQKNsKSSSVSPKMFKKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   381 RFAPQFSGYQQQDSQELLAFILDGLHEDLNRvkkkpylepkdangrpdavvakeaweNHRLRNDSVIVDTFHGLFKSTLV 460
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLK 131
                         170       180
                  ....*....|....*....|....*
gi 74199576   461 CPECAKVSVTFDPFCYLTLPLPLKK 485
Cdd:pfam00443 132 CLSCGEVSETFEPFSDLSLPIPGDS 156
DUSP smart00695
Domain in ubiquitin-specific proteases;
27-125 1.58e-32

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 120.93  E-value: 1.58e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576     27 TLQRGAQWYLIDSRWFKQWKKYVGfdswdmynvGEHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPAEAWNKLLN 106
Cdd:smart00695   1 PLEEGLTWYLISTRWYRQWADFVE---------GKDGKDPGPIDNSGILCSHGGPRLKEHLVEGEDYVLIPEELWNKLVR 71
                           90
                   ....*....|....*....
gi 74199576    107 WYGCVEGqqPIVRKVVEHG 125
Cdd:smart00695  72 WYGGGPG--PIPRKVVCQG 88
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
35-922 1.91e-145

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 452.80  E-value: 1.91e-145
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576  35 YLIDSRWFKqwkKYVGFDSWDmynvGEhnlFPGPIdNSGLFSDPESQTLKEHLIDELDYVLVPAEAWNKLLNWYGcVEGq 114
Cdd:COG5560  48 VIFAYAWYE---GMFDRASCD----GG---SPGPI-VQGPIVDFEPESLKKSLREGIDYSIISGAVWQLLVRWYG-LAG- 114
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 115 qPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCH--------FSKADTIATIEKEMRKLFNIPAErETRLWN- 185
Cdd:COG5560 115 -LITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLghdpvphsASSHGTLRDLSERVMNAFVDPSD-DFRLWDv 192
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 186 --KYMSNTYEQLSKLDN--------------TIQDAGLYQGqVLVIEPQNEDGTWPRQSLQSKSSTAPSRnfttsskpsa 249
Cdd:COG5560 193 vpEIMGLRLGLDSFFRRyrvlasdgrvlhplTRLELFEDRS-VLLLSKITRNPDWLVDSIVDDHNRSINK---------- 261
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 250 spycsvsasliangdstnssgmhssgvsrggsgfsasyncqeppsphiQPGLCGLGNLGNTCFMNSALQCLSNTAPLTEY 329
Cdd:COG5560 262 ------------------------------------------------EAGTCGLRNLGNTCYMNSALQCLMHTWELRDY 293
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 330 FLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDL 409
Cdd:COG5560 294 FLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDL 373
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 410 NRVKKKPYLE-PKDANGRPDAV--VAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKD 486
Cdd:COG5560 374 NRIIKKPYTSkPDLSPGDDVVVkkKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMV 453
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 487 RIMEVFLVPADPQCRPIQ-YRVTVPLMGAISDLCEALSKLSGIAaeNMVVTDVYNHRFHKIF-QMDEGLSH-ITPRDDIF 563
Cdd:COG5560 454 WKHTIVVFPESGRRQPLKiELDASSTIRGLKKLVDAEYGKLGCF--EIKVMCIYYGGNYNMLePADKVLLQdIPQTDFVY 531
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 564 VYEvcnTSMDGsecITLPVYfrekKSRPSSASSGAVLYGQPLLvsvpkhKLTLeslyqavcdRISRYIKQPLPDEFlssp 643
Cdd:COG5560 532 LYE---TNDNG---IEVPVV----HLRIEKGYKSKRLFGDPFL------QLNV---------LIKASIYDKLVKEF---- 582
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 644 lepgacngsrssyegdeeeemdhqeegkEQLSEVEGSGEDDQGDDHSESAQKVKgqpRHKRLFTFSLVNSCGTADINSLA 723
Cdd:COG5560 583 ----------------------------EELLVLVEMKKTDVDLVSEQVRLLRE---ESSPSSWLKLETEIDTKREEQVE 631
                       730       740       750       760       770       780       790       800
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 724 TDGkLLKLNSRSTLAIDWdSETRSLYFDEQESEACEKHLSMSQPQkkkkaaVALRECIELFTTMETLGEHDPWYCPTCKK 803
Cdd:COG5560 632 EEG-QMNFNDAVVISCEW-EEKRYLSLFSYDPLWTIREIGAAERT------ITLQDCLNEFSKPEQLGLSDSWYCPGCKE 703
                       810       820       830       840       850       860       870       880
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 804 HQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGAMGVGHYTA 883
Cdd:COG5560 704 FRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTA 783
                       890       900       910
                ....*....|....*....|....*....|....*....
gi 74199576 884 YAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRR 922
Cdd:COG5560 784 YARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
775-920 3.98e-59

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 202.13  E-value: 3.98e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 775 VALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFV 854
Cdd:cd02674  84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74199576 855 CDRSAR-PYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQ 920
Cdd:cd02674 164 DTRSFTgPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
302-485 1.18e-51

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 183.80  E-value: 1.18e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   302 CGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPlgmKGEIAEAYAELIKQMWSG-RDTHVAPRMFKTQVG 380
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKALQKNsKSSSVSPKMFKKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   381 RFAPQFSGYQQQDSQELLAFILDGLHEDLNRvkkkpylepkdangrpdavvakeaweNHRLRNDSVIVDTFHGLFKSTLV 460
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLK 131
                         170       180
                  ....*....|....*....|....*
gi 74199576   461 CPECAKVSVTFDPFCYLTLPLPLKK 485
Cdd:pfam00443 132 CLSCGEVSETFEPFSDLSLPIPGDS 156
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
764-919 1.93e-51

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 183.41  E-value: 1.93e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   764 MSQPQKKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEF 843
Cdd:pfam00443 151 PIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   844 PVRaLNMSEFVCDRSARP----YVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASED-QIVTKAAYVLF 918
Cdd:pfam00443 231 PLE-LDLSRYLAEELKPKtnnlQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEEtAVLSSSAYILF 309

                  .
gi 74199576   919 Y 919
Cdd:pfam00443 310 Y 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
751-920 5.16e-40

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 148.79  E-value: 5.16e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 751 DEQESEACEKHLSMSQPQKKKKAaVALRECIELFTTMETLGEHDPWYCPtCKKHQQATKKFDLWSLPKILVVHLKRFSYN 830
Cdd:cd02257  76 HESVSTEPELFLSLPLPVKGLPQ-VSLEDCLEKFFKEEILEGDNCYKCE-KKKKQEATKRLKIKKLPPVLIIHLKRFSFN 153
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 831 RYWR-DKLDTVVEFPVRaLNMSEFV------CDRSARPYVYDLIAVSNHYG-AMGVGHYTAYAKNRLNGKWYYFDDSSVS 902
Cdd:cd02257 154 EDGTkEKLNTKVSFPLE-LDLSPYLsegekdSDSDNGSYKYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKVT 232
                       170       180
                ....*....|....*....|...
gi 74199576 903 LASEDQIV-----TKAAYVLFYQ 920
Cdd:cd02257 233 EVSEEEVLefgslSSSAYILFYE 255
Ubiquitin_3 pfam14836
Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin ...
139-226 1.22e-36

Ubiquitin-like domain; This ubiquitin-like domain is found in several ubiquitin carboxyl-terminal hydrolases and in gametogenetin-binding protein.


Pssm-ID: 405518  Cd Length: 88  Bit Score: 132.67  E-value: 1.22e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   139 ELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 218
Cdd:pfam14836   1 SFKLCLPGNLQSPITKKFSKTDTIDFIEKELRKLFSIPKEKETRLWNRYSSNTRELLTDPDITVQEAGLYHGQVLLIEEK 80

                  ....*...
gi 74199576   219 NEDGTWPR 226
Cdd:pfam14836  81 NEDGNWPR 88
DUSP smart00695
Domain in ubiquitin-specific proteases;
27-125 1.58e-32

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 120.93  E-value: 1.58e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576     27 TLQRGAQWYLIDSRWFKQWKKYVGfdswdmynvGEHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPAEAWNKLLN 106
Cdd:smart00695   1 PLEEGLTWYLISTRWYRQWADFVE---------GKDGKDPGPIDNSGILCSHGGPRLKEHLVEGEDYVLIPEELWNKLVR 71
                           90
                   ....*....|....*....
gi 74199576    107 WYGCVEGqqPIVRKVVEHG 125
Cdd:smart00695  72 WYGGGPG--PIPRKVVCQG 88
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
763-919 8.74e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 124.02  E-value: 8.74e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 763 SMSQPQKKKKAAVA-----LRECIELFTTMETLGEhDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRD-K 836
Cdd:cd02660 159 NKSTPSWALGESGVsgtptLSDCLDRFTRPEKLGD-FAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSrK 237
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 837 LDTVVEFPVRaLNMSEFVC---------DRSARPYVYDLIAVSNHYGAMGVGHYTAYAKNRlNGKWYYFDDSSVSLASED 907
Cdd:cd02660 238 IDTYVQFPLE-LNMTPYTSssigdtqdsNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVSEE 315
                       170
                ....*....|..
gi 74199576 908 QIVTKAAYVLFY 919
Cdd:cd02660 316 EVLKSQAYLLFY 327
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
777-919 1.28e-30

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 122.77  E-value: 1.28e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 777 LRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYwrDKLDTVVEFPVRaLNMSEFVCD 856
Cdd:cd02661 164 LEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRG--GKINKQISFPET-LDLSPYMSQ 240
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 74199576 857 RSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNrLNGKWYYFDDSSVSLASEDQIVTKAAYVLFY 919
Cdd:cd02661 241 PNDGPLKYKLYAVLVHSGFsPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
DUSP pfam06337
DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the ...
31-123 3.10e-27

DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-terminus of Ubiquitin-specific proteases. The structure of this domain has been solved. Its tripod-like structure consists of a 3-fold alpha-helical bundle supporting a triple-stranded anti-parallel beta-sheet.


Pssm-ID: 399383  Cd Length: 80  Bit Score: 105.53  E-value: 3.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576    31 GAQWYLIDSRWFKQWKKYVGfdswdmynvgEHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPAEAWNKLLNWYGc 110
Cdd:pfam06337   1 GDKVYLISSKWLNKWKSYVK----------EPNNEPGPIDNSDLLDDESNGQLKPNLQEGVDYVIVPEEVWEFLVEWYG- 69
                          90
                  ....*....|...
gi 74199576   111 veGQQPIVRKVVE 123
Cdd:pfam06337  70 --GGPEIKRNVVN 80
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
302-486 8.65e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 103.12  E-value: 8.65e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 302 CGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKgeIAEAYAELIkqMWSGRDThVAPRMFKTQVGR 381
Cdd:cd02661   2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMC--ALEAHVERA--LASSGPG-SAPRIFSSNLKQ 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 382 FAPQFSGYQQQDSQELLAFILDGLHedlnrvkkKPYLEPKdangrpdavvAKEAWENHRLRNDSVIVDTFHGLFKSTLVC 461
Cdd:cd02661  77 ISKHFRIGRQEDAHEFLRYLLDAMQ--------KACLDRF----------KKLKAVDPSSQETTLVQQIFGGYLRSQVKC 138
                       170       180
                ....*....|....*....|....*
gi 74199576 462 PECAKVSVTFDPFcyLTLPLPLKKD 486
Cdd:cd02661 139 LNCKHVSNTYDPF--LDLSLDIKGA 161
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
777-924 1.26e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 103.11  E-value: 1.26e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 777 LRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYN--RYWRDKLDTVVEFPVRaLNMSEFv 854
Cdd:cd02659 153 LEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDfeTMMRIKINDRFEFPLE-LDMEPY- 230
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 855 CDRSAR------------PYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIV------------ 910
Cdd:cd02659 231 TEKGLAkkegdsekkdseSYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEeecfggeetqkt 310
                       170       180
                ....*....|....*....|....
gi 74199576 911 ----------TKAAYVLFYQRRDD 924
Cdd:cd02659 311 ydsgprafkrTTNAYMLFYERKSP 334
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
759-920 6.04e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 97.07  E-value: 6.04e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 759 EKHLSMSQPQKKK-KAAVALRECIELFTTMETLGEHDPWYCPTCKKhqqATKKFDLWSLPKILVVHLKRFSYNRYWRD-K 836
Cdd:cd02667  94 EPFLDLSLPRSDEiKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLrK 170
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 837 LDTVVEFPVRaLNMSEFVCDRSARP-----YVYDLIAVSNHYGAMGVGHYTAYAKNR---------------------LN 890
Cdd:cd02667 171 VSRHVSFPEI-LDLAPFCDPKCNSSedkssVLYRLYGVVEHSGTMRSGHYVAYVKVRppqqrlsdltkskpaadeagpGS 249
                       170       180       190
                ....*....|....*....|....*....|
gi 74199576 891 GKWYYFDDSSVSLASEDQIVTKAAYVLFYQ 920
Cdd:cd02667 250 GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-491 6.09e-22

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 95.43  E-value: 6.09e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLSNtaplteyflkdeyeaeinrdnplgmkgeiaeayaelikqmwsgrdthvaprmfktqvgrf 382
Cdd:cd02674   1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 383 apqfsgyQQQDSQELLAFILDGLHedlnrvkkkpylepkdangrpdavvakeawenhrlrndSVIVDTFHGLFKSTLVCP 462
Cdd:cd02674  21 -------DQQDAQEFLLFLLDGLH--------------------------------------SIIVDLFQGQLKSRLTCL 55
                       170       180
                ....*....|....*....|....*....
gi 74199576 463 ECAKVSVTFDPFCYLTLPLPLKKDRIMEV 491
Cdd:cd02674  56 TCGKTSTTFEPFTYLSLPIPSGSGDAPKV 84
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-485 1.63e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 96.67  E-value: 1.63e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKG-EIAEAYAELikqMWSGRDTHVAPRMFKTQVGR 381
Cdd:cd02660   2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLScAMDEIFQEF---YYSGDRSPYGPINLLYLSWK 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 382 FAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKkPYLEPKDANgrpdavvakeawenhrlrndsVIVD-TFHGLFKSTLV 460
Cdd:cd02660  79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKN-EANDESHCN---------------------CIIHqTFSGSLQSSVT 136
                       170       180
                ....*....|....*....|....*
gi 74199576 461 CPECAKVSVTFDPFCYLTLPLPLKK 485
Cdd:cd02660 137 CQRCGGVSTTVDPFLDLSLDIPNKS 161
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
777-919 2.21e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 96.34  E-value: 2.21e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 777 LRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRY--WRDKLDTVVEFPvRALNMSEFV 854
Cdd:cd02668 158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKtgAKKKLNASISFP-EILDMGEYL 236
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 855 CDRSARPYVYDLIAVSNHYG--AMGvGHYTAYAKNRLNGKWYYFDDSSVS--------------LASEDQ-------IVT 911
Cdd:cd02668 237 AESDEGSYVYELSGVLIHQGvsAYS-GHYIAHIKDEQTGEWYKFNDEDVEempgkplklgnsedPAKPRKseikkgtHSS 315

                ....*...
gi 74199576 912 KAAYVLFY 919
Cdd:cd02668 316 RTAYMLVY 323
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
779-920 5.28e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 94.68  E-value: 5.28e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 779 ECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYN-RYWR-DKLDTVVEFP--VRALNMSEFv 854
Cdd:cd02663 151 SCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDeQLNRyIKLFYRVVFPleLRLFNTTDD- 229
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74199576 855 CDRSARpyVYDLIAVSNHYGAMGV-GHYTAYAKNrlNGKWYYFDDSSVSLASEDQIV--------TKAAYVLFYQ 920
Cdd:cd02663 230 AENPDR--LYELVAVVVHIGGGPNhGHYVSIVKS--HGGWLLFDDETVEKIDENAVEeffgdspnQATAYVLFYQ 300
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
303-486 5.66e-20

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 90.62  E-value: 5.66e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLSNtaplteyflkdeyeaeinrdnplgmkgeiaeayaelikqmwsgrdthvaprmfktqvgrf 382
Cdd:cd02257   1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 383 apqfsgyQQQDSQELLAFILDGLHEDLNRVKKKpylepkdangrpdavvakeawENHRLRNDSVIVDTFHGLFKSTLVCP 462
Cdd:cd02257  21 -------EQQDAHEFLLFLLDKLHEELKKSSKR---------------------TSDSSSLKSLIHDLFGGKLESTIVCL 72
                       170       180
                ....*....|....*....|....
gi 74199576 463 ECAKVSVTFDPFCYLTLPLPLKKD 486
Cdd:cd02257  73 ECGHESVSTEPELFLSLPLPVKGL 96
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-491 1.05e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 90.52  E-value: 1.05e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLSNTAPLTEYFLKDeyeaeinrdnplgmkgeiaeayaelikqmwsgrdthvaPRMFKTQVGRF 382
Cdd:cd02667   1 GLSNLGNTCFFNAVMQNLSQTPALRELLSET--------------------------------------PKELFSQVCRK 42
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 383 APQFSGYQQQDSQELLAFILDGLhedlnrvkkkpylepkdangrpdavvakeawenhRLRNDSVivdtFHGLFKSTLVCP 462
Cdd:cd02667  43 APQFKGYQQQDSHELLRYLLDGL----------------------------------RTFIDSI----FGGELTSTIMCE 84
                       170       180
                ....*....|....*....|....*....
gi 74199576 463 ECAKVSVTFDPFcyLTLPLPLKKDRIMEV 491
Cdd:cd02667  85 SCGTVSLVYEPF--LDLSLPRSDEIKSEC 111
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
765-920 5.44e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 85.84  E-value: 5.44e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 765 SQPQKKKKAAVALRECIELFTTMETLGEhdpwYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRdkldtvvefP 844
Cdd:cd02658 168 KEEGELVYEPVPLEDCLKAYFAPETIED----FCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWV---------P 234
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 74199576 845 VRaLNMSEFVCDRsARPYVYDLIAVSNHYGA-MGVGHYTAYAKNRLN--GKWYYFDDSSVSLASEDQIVTKAAYVLFYQ 920
Cdd:cd02658 235 KK-LDVPIDVPEE-LGPGKYELIAFISHKGTsVHSGHYVAHIKKEIDgeGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
815-921 6.80e-16

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 79.08  E-value: 6.80e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 815 SLPKILVVHLKRFSYNRYWRdKLDTVVEFPVRaLNMSEFVCDRSARPYVYDLIAVSNHYGAMGVGHYTAYAKNrlNGKWY 894
Cdd:COG5533 178 KLPKILTIQLKRFANLGGNQ-KIDTEVDEKFE-LPVKHDQILNIVKETYYDLVGFVLHQGSLEGGHYIAYVKK--GGKWE 253
                        90       100       110
                ....*....|....*....|....*....|
gi 74199576 895 YFDDSSVSLASEDQIVT---KAAYVLFYQR 921
Cdd:COG5533 254 KANDSDVTPVSEEEAINekaKNAYLYFYER 283
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
808-919 1.77e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 78.14  E-value: 1.77e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 808 TKKFDlwSLPKILVVHLKRFsynrYWRDKLDT------VVEFPVrALNMSEFvCDRSArpyVYDLIAVSNHYGAMG-VGH 880
Cdd:cd02657 190 TSRIS--RLPKYLTVQFVRF----FWKRDIQKkakilrKVKFPF-ELDLYEL-CTPSG---YYELVAVITHQGRSAdSGH 258
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 74199576 881 YTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKA-------AYVLFY 919
Cdd:cd02657 259 YVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSgggdwhiAYILLY 304
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
753-919 7.01e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 76.86  E-value: 7.01e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 753 QESEACEKHLSMSQPQKKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRY 832
Cdd:cd02671 158 QESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGS 237
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 833 WRD------KLDTVVEFPVRaLNMSEFvCDRSARPyVYDLIAVSNHYGA-MGVGHYTAYAknrlngKWYYFDDSSVSLAS 905
Cdd:cd02671 238 EFDcygglsKVNTPLLTPLK-LSLEEW-STKPKND-VYRLFAVVMHSGAtISSGHYTAYV------RWLLFDDSEVKVTE 308
                       170       180
                ....*....|....*....|...
gi 74199576 906 EDQIV---------TKAAYVLFY 919
Cdd:cd02671 309 EKDFLealspntssTSTPYLLFY 331
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-483 3.47e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 74.67  E-value: 3.47e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNP----------LGmKGEIAEAYAELIKQMWSGRDT--HV 370
Cdd:cd02658   1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPandlncqlikLA-DGLLSGRYSKPASLKSENDPYqvGI 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 371 APRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLnrvKKKPYLEPKDangrpdavvakeawenhrlrndsvivdt 450
Cdd:cd02658  80 KPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRES---FKNLGLNPND---------------------------- 128
                       170       180       190
                ....*....|....*....|....*....|....*..
gi 74199576 451 fhgLFK----STLVCPECAKVSVTFDPFCYLTLPLPL 483
Cdd:cd02658 129 ---LFKfmieDRLECLSCKKVKYTSELSEILSLPVPK 162
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
758-920 6.31e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 72.40  E-value: 6.31e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 758 CEKHLSMSQPQKKKKAAVALRECIELFTTMETLGEhdpwycPTCKKHQQATKKfdlwsLPKILVVHLKRFSYN-RYWRDK 836
Cdd:cd02662  79 SFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD------YKCDRCQTVIVR-----LPQILCIHLSRSVFDgRGTSTK 147
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 837 LDTVVEFPvralnmsEFVcdrsaRPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGK--------------------WYYF 896
Cdd:cd02662 148 NSCKVSFP-------ERL-----PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKdkepgsfvrmregpsstshpWWRI 215
                       170       180
                ....*....|....*....|....*
gi 74199576 897 DDSSVSLASEDQIV-TKAAYVLFYQ 920
Cdd:cd02662 216 SDTTVKEVSESEVLeQKSAYMLFYE 240
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
777-909 1.48e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 71.83  E-value: 1.48e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576  777 LRECIELFTTMETLGEHDPWYCptcKKH--QQATKKFDLWSLPKILVVHLKRFSYNrYWRD---KLDTVVEFPVrALNMS 851
Cdd:COG5077  340 LQESFRRYIQVETLDGDNRYNA---EKHglQDAKKGVIFESLPPVLHLQLKRFEYD-FERDmmvKINDRYEFPL-EIDLL 414
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74199576  852 EFV---CDRS-ARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQI 909
Cdd:COG5077  415 PFLdrdADKSeNSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEV 476
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
809-920 2.85e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 70.04  E-value: 2.85e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 809 KKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVC--DRSARPYV-YDLIAVSNHYGAMGV-GHYTAY 884
Cdd:cd02669 325 KRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHfdKPSLNLSTkYNLVANIVHEGTPQEdGTWRVQ 404
                        90       100       110
                ....*....|....*....|....*....|....*.
gi 74199576 885 AKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQ 920
Cdd:cd02669 405 LRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
781-920 5.12e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 68.29  E-value: 5.12e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 781 IELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNR--YWRDKL------DTVVEFPVRALNMS- 851
Cdd:cd02664 140 LNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQktHVREKImdnvsiNEVLSLPVRVESKSs 219
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 852 --------------EFVCDRSArpyVYDLIAVSNHYG-AMGVGHYTAYAKN--------------------RLNGKWYYF 896
Cdd:cd02664 220 esplekkeeesgddGELVTRQV---HYRLYAVVVHSGySSESGHYFTYARDqtdadstgqecpepkdaeenDESKNWYLF 296
                       170       180       190
                ....*....|....*....|....*....|.
gi 74199576 897 DDSSVSLAS--EDQIVTK-----AAYVLFYQ 920
Cdd:cd02664 297 NDSRVTFSSfeSVQNVTSrfpkdTPYILFYE 327
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
299-484 6.74e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 68.88  E-value: 6.74e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFL-KDEYEAEINRdnplgmKGEIAEAYAELIKQMWSgrdthvaPRMFKT 377
Cdd:cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLlYENYENIKDR------KSELVKRLSELIRKIWN-------PRNFKG 183
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 378 QVG----------RFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKpylepkdangrpdavvakeawenhrlrNDSVI 447
Cdd:cd02669 184 HVSphellqavskVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKP---------------------------NSSII 236
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 74199576 448 VDTFHGLFK---------------STLVCPECAKVSVTFDPFCYLTLPLPLK 484
Cdd:cd02669 237 HDCFQGKVQietqkikphaeeegsKDKFFKDSRVKKTSVSPFLLLTLDLPPP 288
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-481 1.03e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 66.97  E-value: 1.03e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLsNTAP-----LTEYFLKDEYEAEINRDnplgmkgeIAEAYAELIKQMWSGRDThVAPRMFKT 377
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCL-RSVPelrdaLKNYNPARRGANQSSDN--------LTNALRDLFDTMDKKQEP-VPPIEFLQ 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 378 QVGRFAPQFS------GYQQQDSQELLAFILDGLHEDLNRVKKKPylepkdangrpdavvakeawenhrlrndSVIVDTF 451
Cdd:cd02657  71 LLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG----------------------------SFIDQLF 122
                       170       180       190
                ....*....|....*....|....*....|.
gi 74199576 452 HGLFKSTLVCPEC-AKVSVTFDPFCYLTLPL 481
Cdd:cd02657 123 GIELETKMKCTESpDEEEVSTESEYKLQCHI 153
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
303-409 1.18e-10

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 63.67  E-value: 1.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLS-NTAPLTEYFLKDEYE-----AEINRDNPLgMKGEIAEAyaeLIKQMWSGRdthvaprmfK 376
Cdd:COG5533   1 GLPNLGNTCFMNSVLQILAlYLPKLDELLDDLSKElkvlkNVIRKPEPD-LNQEEALK---LFTALWSSK---------E 67
                        90       100       110
                ....*....|....*....|....*....|...
gi 74199576 377 TQVGRFAPQfsgYQQQDSQELLAFILDGLHEDL 409
Cdd:COG5533  68 HKVGWIPPM---GSQEDAHELLGKLLDELKLDL 97
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-482 2.25e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 56.55  E-value: 2.25e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLSNTAPLTEyfLKDEYEAEINRDNPLGMkgeiaeayaelikqmwsgrdthVAPRMFKTQVGRF 382
Cdd:cd02663   1 GLENFGNTCYCNSVLQALYFENLLTC--LKDLFESISEQKKRTGV----------------------ISPKKFITRLKRE 56
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 383 APQFSGYQQQDSQELLAFILDGLHEDLNRVKKKpYLEPKDANGRPDAVVAKEaWenhrlrndsvIVDTFHGLFKSTLVCP 462
Cdd:cd02663  57 NELFDNYMHQDAHEFLNFLLNEIAEILDAERKA-EKANRKLNNNNNAEPQPT-W----------VHEIFQGILTNETRCL 124
                       170       180
                ....*....|....*....|
gi 74199576 463 ECAKVSVTFDPFCYLTLPLP 482
Cdd:cd02663 125 TCETVSSRDETFLDLSIDVE 144
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-495 2.38e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 56.73  E-value: 2.38e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLsntaplteyFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMW---SGRDTHVAPRMFKTQV 379
Cdd:cd02664   1 GLINLGNTCYMNSVLQAL---------FMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHlmhTQRRAEAPPDYFLEAS 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 380 grFAPQFSGYQQQDSQELLAFILDGLHedlnrvkkkpylepkdangrpdavvakeawenhrlrndSVIVDTFHGLFKSTL 459
Cdd:cd02664  72 --RPPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTI 111
                       170       180       190
                ....*....|....*....|....*....|....*.
gi 74199576 460 VCPECAKVSVTFDPFCYLTLPLPLKKDrIMEVFLVP 495
Cdd:cd02664 112 RCLNCNSTSARTERFRDLDLSFPSVQD-LLNYFLSP 146
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
299-407 4.08e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 52.97  E-value: 4.08e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 299 PGLCGLGNLGNTCFMNSALQCLsntaplteYFLKDeYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQ 378
Cdd:cd02671  22 LPFVGLNNLGNTCYLNSVLQVL--------YFCPG-FKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPRRLLNA 92
                        90       100
                ....*....|....*....|....*....
gi 74199576 379 VGRFAPQFSGYQQQDSQELLAFILDGLHE 407
Cdd:cd02671  93 LREVNPMYEGYLQHDAQEVLQCILGNIQE 121
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
798-919 4.10e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 49.06  E-value: 4.10e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 798 CPTCKkHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTvvefpvralNMSEFVCDRSARPyVYDLIAVSNHYG-AM 876
Cdd:cd02673 129 CSSCK-CESAISSERIMTFPECLSINLKRYKLRIATSDYLKK---------NEEIMKKYCGTDA-KYSLVAVICHLGeSP 197
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 74199576 877 GVGHYTAYAKNRLNG-KWYYFDDSSVSLASEDQIVTKA---AYVLFY 919
Cdd:cd02673 198 YDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDVSTNArssGYLIFY 244
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
816-919 8.77e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 47.94  E-value: 8.77e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 816 LPKILVVHLKRFSYNRYWRDKLDTVVEFPvralnmsefvcdRSARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYY 895
Cdd:cd02665 128 LPPVLTFELSRFEFNQGRPEKIHDKLEFP------------QIIQQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEK 195
                        90       100       110
                ....*....|....*....|....*....|..
gi 74199576 896 FDDSSVSLASEDQIVTKA--------AYVLFY 919
Cdd:cd02665 196 YNDISVTESSWEEVERDSfgggrnpsAYCLMY 227
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
762-920 8.35e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 45.58  E-value: 8.35e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 762 LSMSQPQKKKKAAVALRECIELFTTMEtlgEHDPWYCPTCKKHQQATKKFDLWSLPKI----LVVHLKRFSYNR--YWRD 835
Cdd:cd02672 104 LSLPLGSTKTSKESTFLQLLKRSLDLE---KVTKAWCDTCCKYQPLEQTTSIRHLPDIlllvLVINLSVTNGEFddINVV 180
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 836 KLDTVV---EFPVRALNMSEFVCDRSARP-YVYDLIAV-----SNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASE 906
Cdd:cd02672 181 LPSGKVmqnKVSPKAIDHDKLVKNRGQESiYKYELVGYvceinDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE 260
                       170
                ....*....|....
gi 74199576 907 DqivtkaAYVLFYQ 920
Cdd:cd02672 261 L------AYILLYQ 268
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-329 1.14e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 44.66  E-value: 1.14e-04
                        10        20
                ....*....|....*....|....*..
gi 74199576 303 GLGNLGNTCFMNSALQCLSNTAPLTEY 329
Cdd:cd02662   1 GLVNLGNTCFMNSVLQALASLPSLIEY 27
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
303-484 1.39e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 45.10  E-value: 1.39e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 303 GLGNLGNTCFMNSALQCLSNTAPLTEYFLK-----DEYEAEINRDNPLGMKGeIAEAYAELIKQMWSGRDTHVAPRMFKT 377
Cdd:cd02668   1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYEcnsteDAELKNMPPDKPHEPQT-IIDQLQLIFAQLQFGNRSVVDPSGFVK 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 378 QVGrfapqFSGYQQQDSQELLAFILDGLHEDLNRVKKkpylepkdangrPDAVvakeawenhrlrndSVIVDTFHGLFKS 457
Cdd:cd02668  80 ALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN------------PDLK--------------NIVQDLFRGEYSY 128
                       170       180
                ....*....|....*....|....*..
gi 74199576 458 TLVCPECAKVSVTFDPFcyLTLPLPLK 484
Cdd:cd02668 129 VTQCSKCGRESSLPSKF--YELELQLK 153
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
300-484 6.41e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 43.01  E-value: 6.41e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 300 GLCGLGNLGNTCFMNSALQCLSNTAplteYFLKDEYEAEINRDNPlGMKGEIaeayAELIKQMWSgrdTHVAPRMFKTQV 379
Cdd:cd02659   1 GYVGLKNQGATCYMNSLLQQLYMTP----EFRNAVYSIPPTEDDD-DNKSVP----LALQRLFLF---LQLSESPVKTTE 68
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576 380 GRFAPQFSG------YQQQDSQELLAFILDGLHEDLNRVKKKPylepkdangrpdavvakeawenhrlrndsVIVDTFHG 453
Cdd:cd02659  69 LTDKTRSFGwdslntFEQHDVQEFFRVLFDKLEEKLKGTGQEG-----------------------------LIKNLFGG 119
                       170       180       190
                ....*....|....*....|....*....|.
gi 74199576 454 LFKSTLVCPECAKVSVTFDPFcyLTLPLPLK 484
Cdd:cd02659 120 KLVNYIICKECPHESEREEYF--LDLQVAVK 148
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
798-901 7.53e-04

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 42.64  E-value: 7.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   798 CPTCKKHQQATKKFDLWSLPKILVVHLKRfsYNRYWRDKLDTVVEFPVRaLNMSEFVCDRSARP-YVYDLIAV------- 869
Cdd:pfam13423 196 CEKCKRYQPLESRRTVRNLPPVLSLNAAL--TNEEWRQLWKTPGWLPPE-IGLTLSDDLQGDNEiVKYELRGVvvhigds 272
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 74199576   870 --SNHYGAM-GVGHytAYAKNRLNGKWYYFDDSSV 901
Cdd:pfam13423 273 gtSGHLVSFvKVAD--SELEDPTESQWYLFNDFLV 305
USP7_C2 pfam14533
Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific ...
504-586 9.51e-04

Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific proteases has no known function.


Pssm-ID: 464201  Cd Length: 204  Bit Score: 41.70  E-value: 9.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576   504 QYRVTVPLMGAISDLCEALSKLSGIAAE---NMVVTDVYNHRFHKIFQMDEGLSHITPRDDIFVYEVCNTSMD-GSECIT 579
Cdd:pfam14533  34 ELELLVPKNGTVADLLEELQKKVKLSEEgsgKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNlDEGERL 113

                  ....*....
gi 74199576   580 LPV--YFRE 586
Cdd:pfam14533 114 IPVfhFQKE 122
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
297-405 1.61e-03

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 42.55  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74199576  297 IQPGLCGLGNLGNTCFMNSALQCLSNTAplteYFLKDEYeaEINRDNPLGmKGEIAEAYAELIKQMWSGR---DTHVAPR 373
Cdd:COG5077  189 KETGYVGLRNQGATCYMNSLLQSLFFIA----KFRKDVY--GIPTDHPRG-RDSVALALQRLFYNLQTGEepvDTTELTR 261
                         90       100       110
                 ....*....|....*....|....*....|..
gi 74199576  374 MFKTQvgrfapQFSGYQQQDSQELLAFILDGL 405
Cdd:COG5077  262 SFGWD------SDDSFMQHDIQEFNRVLQDNL 287
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
860-910 2.73e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 40.94  E-value: 2.73e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 74199576 860 RPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIV 910
Cdd:cd02666 277 KSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVF 327
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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