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Concise Results
Standard Results
Full Results
Tn3 family transposase [Sphingobium yanoikuyae]
Protein Classification
Tn3 family transposase ( domain architecture ID 1750096 )
Tn3 family transposase catalyzes DNA cleavage and strand transfer reactions necessary for formation of a cointegrate transposition intermediate during replicative transposition which is composed of donor (with the transposon) and target (without the transposon) circular DNA molecules fused into a single circular molecule and separated by two directly repeated transposon copies, one at each donor-target junction.
List of domain hits
Name
Accession
Description
Interval
E-value
transpos_Tn3 super family
cl41305 Tn3 family transposase;
20-963
0e+00
Tn3 family transposase;
NF033527 :Pssm-ID: 468061 [Multi-domain]
Cd Length: 954
Bit Score: 983.29
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 20 L D E REIA R HY TL TS DDL EIVGR RR G D AT RLGFA ML L LTM R W PGR A L EA GE VP P AP VL AY VA R QLG VA P EAF A D YA H R DQ T 99
Cdd:NF033527 1 L S E ADLR R YF TL SD DDL ALINS RR R D HN RLGFA LQ L GYL R Y PGR F L GP GE EI P PG VL RF VA E QLG IG P DLL A E YA T R GR T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 100 R R EH LV EIR RSH G F R I FD RDAF R EVAAFAIPI A QTIVH P G Q M A GVIVDE LRRR Q I LL P SSSI LE AVLRR A RQQ AE QLTYE 179
Cdd:NF033527 81 R Y EH RA EIR ELL G Y R L FD ESDR R DLLRWLLEQ A AWTDK P R Q L A DAAIEW LRRR K I II P GYTT LE RLIAE A LSA AE RRLAA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 180 V L TNG L L P DTL Q G LD D LL ARRT G QAATW L S WLR NA P QS P AA R NI L RLI ERL AHV R A LGL DR G RADMI P ASTFDR LA D EG S 259
Cdd:NF033527 161 A L ASA L S P EQR Q A LD A LL TSDR G DRLSR L A WLR QG P GR P SG R EM L EEL ERL EPL R S LGL PL G ILLGV P DKRLRH LA R EG A 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 260 RI TPQ H L GE L NAL RR H ATL A A TGIRL E ES LTD ATLT MFD K L L G SMV RRA ENRTRDKALKTVRE L QGHL R T L TGSCRI L I D 339
Cdd:NF033527 241 SY TPQ D L RR L KPP RR Y ATL V A FLTER E AT LTD DLID MFD R L I G KLF RRA KRKAQKEVQASRKK L ADKV R L L ARLGKA L L D 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 340 A RTN G V D SL A QIE - ALD W Q R F A VA V EQAEV L G RP ETV D RT A ELI E RHR T VKL F AG P F L NTF EF RG A G A V Q G LLAALA IIA 418
Cdd:NF033527 321 A KED G E D PF A AVR q VAL W D R L A EL V AEVCK L A RP SRE D FL A QML E SYG T LRR F LP P L L AAL EF EA A P A A Q P LLAALA LLR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 419 ELY RT G K R R LP DRV P LR F VPSA WR PF VL R - DG IV DR A AYELC A L SQ LR E RLR A GD I WV A GSR QF R NFDS YLIPP ATYA A L 497
Cdd:NF033527 401 ELY AS G R R K LP ADA P TG F LRKR WR RL VL T p DG GI DR R AYELC V L FE LR D RLR S GD V WV E GSR RY R DLED YLIPP EEFQ A D 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 498 R EKGP LPLA IET D F E RHIE E RRT RLD TAIEQ V TVLARQ G E L PQVRLDENG L I I S PL K A - AT PP ATEIA R RAA Y D RLP R V K 576
Cdd:NF033527 481 R LAYY LPLA LPA D A E TFLQ E LLA RLD ARLAA V ARRLPE G D L ENRIITDKR L H I T PL W A l DE PP SADRL R DQI Y A RLP P V D 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 577 ITDLLLEVDAWTGFS E CF I H RRSG -- R EA D DRNA LL TVI LADG I NLGLTRMA ET C R G ASLR QL AHLHD W H I SEAAYGE A L 654
Cdd:NF033527 561 ITDLLLEVDAWTGFS R CF T H LSPR ep R AK D ELLS LL AAL LADG T NLGLTRMA RA C P G VTYD QL SWVQA W Y I RDETLRA A N 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 655 G R LID A HRTM PLAA L WGDGTT S SSDGQ Q F HA G G R GAAI G DI N ARS G NE PGV AF YTHVSD R Y D PF A S R VI A A TAG EA P YVL 734
Cdd:NF033527 641 A R IVN A QAAL PLAA H WGDGTT A SSDGQ K F ET G R R TEKA G YV N KYF G SG PGV TA YTHVSD Q Y A PF H S Q VI P A NER EA A YVL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 735 DGLL Y H QTG L T I E EHYTDT G G A SDHVF G L MPFF G Y RFAPR L RD IKE RRL H L LP G QESGPL L GGMTAEP I A L GHVA AHWD E 814
Cdd:NF033527 721 DGLL R H ESD L K I D EHYTDT H G Y SDHVF A L AHLL G F RFAPR I RD LGD RRL Y L PD G DADYGE L NPLLGGR I D L KLIE AHWD D 800
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 815 L LR F A T S IRT GTVTAS AM LR R L SA YPRQN G LA L ALRELGR L ER SI F M LD WLR D ID LRRR T QAGLN K GEARNALARA L FF N 894
Cdd:NF033527 801 I LR L A A S LKL GTVTAS LL LR K L GS YPRQN P LA Q ALRELGR I ER TL F L LD YID D EE LRRR V QAGLN R GEARNALARA I FF G 880
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739666854 895 Q LGE L RDRRFE N Q TY RAS G LNL LVA AI I LWNT R YL EM AL ADIA ----- T PDE IA R HIA PLGWEHI S LTGDY SWN 963
Cdd:NF033527 881 R LGE I RDRRFE E Q EL RAS A LNL VAN AI V LWNT L YL QR AL THLR argqt I PDE LL R RLS PLGWEHI N LTGDY LFT 954
Name
Accession
Description
Interval
E-value
transpos_Tn3
NF033527 Tn3 family transposase;
20-963
0e+00
Tn3 family transposase;
Pssm-ID: 468061 [Multi-domain]
Cd Length: 954
Bit Score: 983.29
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 20 L D E REIA R HY TL TS DDL EIVGR RR G D AT RLGFA ML L LTM R W PGR A L EA GE VP P AP VL AY VA R QLG VA P EAF A D YA H R DQ T 99
Cdd:NF033527 1 L S E ADLR R YF TL SD DDL ALINS RR R D HN RLGFA LQ L GYL R Y PGR F L GP GE EI P PG VL RF VA E QLG IG P DLL A E YA T R GR T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 100 R R EH LV EIR RSH G F R I FD RDAF R EVAAFAIPI A QTIVH P G Q M A GVIVDE LRRR Q I LL P SSSI LE AVLRR A RQQ AE QLTYE 179
Cdd:NF033527 81 R Y EH RA EIR ELL G Y R L FD ESDR R DLLRWLLEQ A AWTDK P R Q L A DAAIEW LRRR K I II P GYTT LE RLIAE A LSA AE RRLAA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 180 V L TNG L L P DTL Q G LD D LL ARRT G QAATW L S WLR NA P QS P AA R NI L RLI ERL AHV R A LGL DR G RADMI P ASTFDR LA D EG S 259
Cdd:NF033527 161 A L ASA L S P EQR Q A LD A LL TSDR G DRLSR L A WLR QG P GR P SG R EM L EEL ERL EPL R S LGL PL G ILLGV P DKRLRH LA R EG A 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 260 RI TPQ H L GE L NAL RR H ATL A A TGIRL E ES LTD ATLT MFD K L L G SMV RRA ENRTRDKALKTVRE L QGHL R T L TGSCRI L I D 339
Cdd:NF033527 241 SY TPQ D L RR L KPP RR Y ATL V A FLTER E AT LTD DLID MFD R L I G KLF RRA KRKAQKEVQASRKK L ADKV R L L ARLGKA L L D 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 340 A RTN G V D SL A QIE - ALD W Q R F A VA V EQAEV L G RP ETV D RT A ELI E RHR T VKL F AG P F L NTF EF RG A G A V Q G LLAALA IIA 418
Cdd:NF033527 321 A KED G E D PF A AVR q VAL W D R L A EL V AEVCK L A RP SRE D FL A QML E SYG T LRR F LP P L L AAL EF EA A P A A Q P LLAALA LLR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 419 ELY RT G K R R LP DRV P LR F VPSA WR PF VL R - DG IV DR A AYELC A L SQ LR E RLR A GD I WV A GSR QF R NFDS YLIPP ATYA A L 497
Cdd:NF033527 401 ELY AS G R R K LP ADA P TG F LRKR WR RL VL T p DG GI DR R AYELC V L FE LR D RLR S GD V WV E GSR RY R DLED YLIPP EEFQ A D 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 498 R EKGP LPLA IET D F E RHIE E RRT RLD TAIEQ V TVLARQ G E L PQVRLDENG L I I S PL K A - AT PP ATEIA R RAA Y D RLP R V K 576
Cdd:NF033527 481 R LAYY LPLA LPA D A E TFLQ E LLA RLD ARLAA V ARRLPE G D L ENRIITDKR L H I T PL W A l DE PP SADRL R DQI Y A RLP P V D 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 577 ITDLLLEVDAWTGFS E CF I H RRSG -- R EA D DRNA LL TVI LADG I NLGLTRMA ET C R G ASLR QL AHLHD W H I SEAAYGE A L 654
Cdd:NF033527 561 ITDLLLEVDAWTGFS R CF T H LSPR ep R AK D ELLS LL AAL LADG T NLGLTRMA RA C P G VTYD QL SWVQA W Y I RDETLRA A N 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 655 G R LID A HRTM PLAA L WGDGTT S SSDGQ Q F HA G G R GAAI G DI N ARS G NE PGV AF YTHVSD R Y D PF A S R VI A A TAG EA P YVL 734
Cdd:NF033527 641 A R IVN A QAAL PLAA H WGDGTT A SSDGQ K F ET G R R TEKA G YV N KYF G SG PGV TA YTHVSD Q Y A PF H S Q VI P A NER EA A YVL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 735 DGLL Y H QTG L T I E EHYTDT G G A SDHVF G L MPFF G Y RFAPR L RD IKE RRL H L LP G QESGPL L GGMTAEP I A L GHVA AHWD E 814
Cdd:NF033527 721 DGLL R H ESD L K I D EHYTDT H G Y SDHVF A L AHLL G F RFAPR I RD LGD RRL Y L PD G DADYGE L NPLLGGR I D L KLIE AHWD D 800
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 815 L LR F A T S IRT GTVTAS AM LR R L SA YPRQN G LA L ALRELGR L ER SI F M LD WLR D ID LRRR T QAGLN K GEARNALARA L FF N 894
Cdd:NF033527 801 I LR L A A S LKL GTVTAS LL LR K L GS YPRQN P LA Q ALRELGR I ER TL F L LD YID D EE LRRR V QAGLN R GEARNALARA I FF G 880
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739666854 895 Q LGE L RDRRFE N Q TY RAS G LNL LVA AI I LWNT R YL EM AL ADIA ----- T PDE IA R HIA PLGWEHI S LTGDY SWN 963
Cdd:NF033527 881 R LGE I RDRRFE E Q EL RAS A LNL VAN AI V LWNT L YL QR AL THLR argqt I PDE LL R RLS PLGWEHI N LTGDY LFT 954
COG4644
COG4644 Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];
500-985
0e+00
Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];
Pssm-ID: 443682
Cd Length: 490
Bit Score: 545.77
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 500 K G PLP L AIET D FERHIEE R RTR L DTAIEQ V TVL A RQ GEL PQVRLDENG L IISP L KAAT P P A TEI A RRAAYDR LP RVK I TD 579
Cdd:COG4644 1 A G LPA L LLLP D AALTLLL R LLL L EARLLD V AAA A AR GEL LGGKIGKLL L KLPA L DPPP P E A ALR A ALRRLLP LP PLI I LL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 580 LL LE VD AW TGF SEC F IHRRS GR EA DD RNA LL TVI LA D G I N L GL T - R MA ETCR G A S LR QLA HLHD W H I S E AAYGE A LGRLI 658
Cdd:COG4644 81 LL VD VD TG TGF FFF F TSLGR GR KP DD DRR LL LAL LA A G G N N GL L p K MA RASP G L S RD QLA WVAR W Y I R E ETLRA A NAAIV 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 659 D A HRTM PLAALWGDGTT S SSDGQ Q F HA G G R GAAI G DI N ARS G N EPGV AF YTHVSD R Y D PF A S R VI A AT AG EA P YVLDGLL 738
Cdd:COG4644 161 N A QHRL PLAALWGDGTT A SSDGQ K F EV G V R NLLA G YS N RYY G R EPGV TI YTHVSD Q Y A PF H S Q VI P AT ER EA A YVLDGLL 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 739 YHQ T G L TIE EHYTDT G G A SDHVF G L MPFF G Y RFAPR L RD I K E R R L HLLPGQESGPL L GGMTAEP I ALGHVAA HWD EL LR F 818
Cdd:COG4644 241 RNE T D L KPD EHYTDT H G Y SDHVF A L CHLL G F RFAPR I RD L K D R K L YRPDPPTRYEH L DPLIGGT I NWDLIEE HWD DI LR L 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 819 A T SI RT GTV T AS AM LRRL SA Y P RQN G L AL ALRELGR L ER SI F M LD W L R D ID LRRR T QAGLNKGEARNALARA L FF NQ LGE 898
Cdd:COG4644 321 A A SI KL GTV S AS TI LRRL GS Y S RQN P L YK ALRELGR I ER TL F L LD Y L D D PE LRRR I QAGLNKGEARNALARA I FF GR LGE 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 899 L RDR RF E N Q TY RAS G LNL LVA AI I LWNT R YL EM AL ADIAT ----- PDE IAR H IA PLGWEHI S LTGDY SWNV E DRPDP da L 973
Cdd:COG4644 401 I RDR TR E E Q EK RAS A LNL VAN AI V LWNT L YL QR AL EELRA egdei PDE LLA H LS PLGWEHI N LTGDY DFDL E RKLGG -- L 478
490
....*....|..
gi 739666854 974 RPLRA VSS LL A A 985
Cdd:COG4644 479 RPLRA PLA LL L A 490
DDE_Tnp_Tn3
pfam01526 Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, ...
579-960
5.13e-177
Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.
Pssm-ID: 426307
Cd Length: 389
Bit Score: 519.76
E-value: 5.13e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 579 DLLLEVDAWTGF SEC F I H RRSG -- R EA D DRNA LL TVI LA D G I NLGL T RMA ETCR G A S LR QLA HLHDWH I S E AAYGE A LGR 656
Cdd:pfam01526 1 DLLLEVDAWTGF TRA F T H LSGR ep R SK D ELRR LL AAL LA Y G T NLGL K RMA RAIP G L S YD QLA WVNRRY I R E ETLRA A NAA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 657 LID A HRTM PLA A LWGDGTT S SSDGQ Q F H A G g RGAAIGDI N A R - S G NEP GV AF YTHVSD R Y D P FA S R VI AA T AG EA P YVLD 735
Cdd:pfam01526 81 IVN A QARL PLA R LWGDGTT A SSDGQ K F E A P - VQNLLARY N P R y F G RGR GV TI YTHVSD Q Y I P LH S Q VI PC T ER EA H YVLD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 736 GLL YHQTG L TIE EHYTDT G G A SD H VF G L MPFF G YR FAPRLRD I K E R R L HLLPGQESG P L L GGMTAEP I ALGHVAA HWD EL 815
Cdd:pfam01526 160 GLL RNTSD L QPD EHYTDT H G Y SD V VF A L AHLL G FQ FAPRLRD L K D R K L YRPDAGADY P H L DPLLGRR I NWDLIEE HWD DI 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 816 LR F A T SI RT GTV T AS AM LR R L SA Y P RQN G L AL ALRELGR LE R SI F M LD W L R D I DLRR RT QAGLNKGEAR N ALARA L FF NQ 895
Cdd:pfam01526 240 LR V A A SI KL GTV S AS TI LR K L GS Y S RQN P L YK ALRELGR II R TL F L LD Y L D D P DLRR EI QAGLNKGEAR H ALARA I FF GK 319
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 896 L GE L RDRR F E N Q TY RAS G LNL LVA AI I LWNT R YL EM AL ADI ----- ATP DE IARHIA PLGWEHI S L T G D Y 960
Cdd:pfam01526 320 G GE I RDRR R E E Q EK RAS A LNL VAN AI V LWNT V YL QR AL EQL raege DVT DE DLARLS PLGWEHI N L F G R Y 389
Name
Accession
Description
Interval
E-value
transpos_Tn3
NF033527 Tn3 family transposase;
20-963
0e+00
Tn3 family transposase;
Pssm-ID: 468061 [Multi-domain]
Cd Length: 954
Bit Score: 983.29
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 20 L D E REIA R HY TL TS DDL EIVGR RR G D AT RLGFA ML L LTM R W PGR A L EA GE VP P AP VL AY VA R QLG VA P EAF A D YA H R DQ T 99
Cdd:NF033527 1 L S E ADLR R YF TL SD DDL ALINS RR R D HN RLGFA LQ L GYL R Y PGR F L GP GE EI P PG VL RF VA E QLG IG P DLL A E YA T R GR T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 100 R R EH LV EIR RSH G F R I FD RDAF R EVAAFAIPI A QTIVH P G Q M A GVIVDE LRRR Q I LL P SSSI LE AVLRR A RQQ AE QLTYE 179
Cdd:NF033527 81 R Y EH RA EIR ELL G Y R L FD ESDR R DLLRWLLEQ A AWTDK P R Q L A DAAIEW LRRR K I II P GYTT LE RLIAE A LSA AE RRLAA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 180 V L TNG L L P DTL Q G LD D LL ARRT G QAATW L S WLR NA P QS P AA R NI L RLI ERL AHV R A LGL DR G RADMI P ASTFDR LA D EG S 259
Cdd:NF033527 161 A L ASA L S P EQR Q A LD A LL TSDR G DRLSR L A WLR QG P GR P SG R EM L EEL ERL EPL R S LGL PL G ILLGV P DKRLRH LA R EG A 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 260 RI TPQ H L GE L NAL RR H ATL A A TGIRL E ES LTD ATLT MFD K L L G SMV RRA ENRTRDKALKTVRE L QGHL R T L TGSCRI L I D 339
Cdd:NF033527 241 SY TPQ D L RR L KPP RR Y ATL V A FLTER E AT LTD DLID MFD R L I G KLF RRA KRKAQKEVQASRKK L ADKV R L L ARLGKA L L D 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 340 A RTN G V D SL A QIE - ALD W Q R F A VA V EQAEV L G RP ETV D RT A ELI E RHR T VKL F AG P F L NTF EF RG A G A V Q G LLAALA IIA 418
Cdd:NF033527 321 A KED G E D PF A AVR q VAL W D R L A EL V AEVCK L A RP SRE D FL A QML E SYG T LRR F LP P L L AAL EF EA A P A A Q P LLAALA LLR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 419 ELY RT G K R R LP DRV P LR F VPSA WR PF VL R - DG IV DR A AYELC A L SQ LR E RLR A GD I WV A GSR QF R NFDS YLIPP ATYA A L 497
Cdd:NF033527 401 ELY AS G R R K LP ADA P TG F LRKR WR RL VL T p DG GI DR R AYELC V L FE LR D RLR S GD V WV E GSR RY R DLED YLIPP EEFQ A D 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 498 R EKGP LPLA IET D F E RHIE E RRT RLD TAIEQ V TVLARQ G E L PQVRLDENG L I I S PL K A - AT PP ATEIA R RAA Y D RLP R V K 576
Cdd:NF033527 481 R LAYY LPLA LPA D A E TFLQ E LLA RLD ARLAA V ARRLPE G D L ENRIITDKR L H I T PL W A l DE PP SADRL R DQI Y A RLP P V D 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 577 ITDLLLEVDAWTGFS E CF I H RRSG -- R EA D DRNA LL TVI LADG I NLGLTRMA ET C R G ASLR QL AHLHD W H I SEAAYGE A L 654
Cdd:NF033527 561 ITDLLLEVDAWTGFS R CF T H LSPR ep R AK D ELLS LL AAL LADG T NLGLTRMA RA C P G VTYD QL SWVQA W Y I RDETLRA A N 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 655 G R LID A HRTM PLAA L WGDGTT S SSDGQ Q F HA G G R GAAI G DI N ARS G NE PGV AF YTHVSD R Y D PF A S R VI A A TAG EA P YVL 734
Cdd:NF033527 641 A R IVN A QAAL PLAA H WGDGTT A SSDGQ K F ET G R R TEKA G YV N KYF G SG PGV TA YTHVSD Q Y A PF H S Q VI P A NER EA A YVL 720
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 735 DGLL Y H QTG L T I E EHYTDT G G A SDHVF G L MPFF G Y RFAPR L RD IKE RRL H L LP G QESGPL L GGMTAEP I A L GHVA AHWD E 814
Cdd:NF033527 721 DGLL R H ESD L K I D EHYTDT H G Y SDHVF A L AHLL G F RFAPR I RD LGD RRL Y L PD G DADYGE L NPLLGGR I D L KLIE AHWD D 800
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 815 L LR F A T S IRT GTVTAS AM LR R L SA YPRQN G LA L ALRELGR L ER SI F M LD WLR D ID LRRR T QAGLN K GEARNALARA L FF N 894
Cdd:NF033527 801 I LR L A A S LKL GTVTAS LL LR K L GS YPRQN P LA Q ALRELGR I ER TL F L LD YID D EE LRRR V QAGLN R GEARNALARA I FF G 880
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739666854 895 Q LGE L RDRRFE N Q TY RAS G LNL LVA AI I LWNT R YL EM AL ADIA ----- T PDE IA R HIA PLGWEHI S LTGDY SWN 963
Cdd:NF033527 881 R LGE I RDRRFE E Q EL RAS A LNL VAN AI V LWNT L YL QR AL THLR argqt I PDE LL R RLS PLGWEHI N LTGDY LFT 954
COG4644
COG4644 Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];
500-985
0e+00
Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];
Pssm-ID: 443682
Cd Length: 490
Bit Score: 545.77
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 500 K G PLP L AIET D FERHIEE R RTR L DTAIEQ V TVL A RQ GEL PQVRLDENG L IISP L KAAT P P A TEI A RRAAYDR LP RVK I TD 579
Cdd:COG4644 1 A G LPA L LLLP D AALTLLL R LLL L EARLLD V AAA A AR GEL LGGKIGKLL L KLPA L DPPP P E A ALR A ALRRLLP LP PLI I LL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 580 LL LE VD AW TGF SEC F IHRRS GR EA DD RNA LL TVI LA D G I N L GL T - R MA ETCR G A S LR QLA HLHD W H I S E AAYGE A LGRLI 658
Cdd:COG4644 81 LL VD VD TG TGF FFF F TSLGR GR KP DD DRR LL LAL LA A G G N N GL L p K MA RASP G L S RD QLA WVAR W Y I R E ETLRA A NAAIV 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 659 D A HRTM PLAALWGDGTT S SSDGQ Q F HA G G R GAAI G DI N ARS G N EPGV AF YTHVSD R Y D PF A S R VI A AT AG EA P YVLDGLL 738
Cdd:COG4644 161 N A QHRL PLAALWGDGTT A SSDGQ K F EV G V R NLLA G YS N RYY G R EPGV TI YTHVSD Q Y A PF H S Q VI P AT ER EA A YVLDGLL 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 739 YHQ T G L TIE EHYTDT G G A SDHVF G L MPFF G Y RFAPR L RD I K E R R L HLLPGQESGPL L GGMTAEP I ALGHVAA HWD EL LR F 818
Cdd:COG4644 241 RNE T D L KPD EHYTDT H G Y SDHVF A L CHLL G F RFAPR I RD L K D R K L YRPDPPTRYEH L DPLIGGT I NWDLIEE HWD DI LR L 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 819 A T SI RT GTV T AS AM LRRL SA Y P RQN G L AL ALRELGR L ER SI F M LD W L R D ID LRRR T QAGLNKGEARNALARA L FF NQ LGE 898
Cdd:COG4644 321 A A SI KL GTV S AS TI LRRL GS Y S RQN P L YK ALRELGR I ER TL F L LD Y L D D PE LRRR I QAGLNKGEARNALARA I FF GR LGE 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 899 L RDR RF E N Q TY RAS G LNL LVA AI I LWNT R YL EM AL ADIAT ----- PDE IAR H IA PLGWEHI S LTGDY SWNV E DRPDP da L 973
Cdd:COG4644 401 I RDR TR E E Q EK RAS A LNL VAN AI V LWNT L YL QR AL EELRA egdei PDE LLA H LS PLGWEHI N LTGDY DFDL E RKLGG -- L 478
490
....*....|..
gi 739666854 974 RPLRA VSS LL A A 985
Cdd:COG4644 479 RPLRA PLA LL L A 490
DDE_Tnp_Tn3
pfam01526 Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, ...
579-960
5.13e-177
Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.
Pssm-ID: 426307
Cd Length: 389
Bit Score: 519.76
E-value: 5.13e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 579 DLLLEVDAWTGF SEC F I H RRSG -- R EA D DRNA LL TVI LA D G I NLGL T RMA ETCR G A S LR QLA HLHDWH I S E AAYGE A LGR 656
Cdd:pfam01526 1 DLLLEVDAWTGF TRA F T H LSGR ep R SK D ELRR LL AAL LA Y G T NLGL K RMA RAIP G L S YD QLA WVNRRY I R E ETLRA A NAA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 657 LID A HRTM PLA A LWGDGTT S SSDGQ Q F H A G g RGAAIGDI N A R - S G NEP GV AF YTHVSD R Y D P FA S R VI AA T AG EA P YVLD 735
Cdd:pfam01526 81 IVN A QARL PLA R LWGDGTT A SSDGQ K F E A P - VQNLLARY N P R y F G RGR GV TI YTHVSD Q Y I P LH S Q VI PC T ER EA H YVLD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 736 GLL YHQTG L TIE EHYTDT G G A SD H VF G L MPFF G YR FAPRLRD I K E R R L HLLPGQESG P L L GGMTAEP I ALGHVAA HWD EL 815
Cdd:pfam01526 160 GLL RNTSD L QPD EHYTDT H G Y SD V VF A L AHLL G FQ FAPRLRD L K D R K L YRPDAGADY P H L DPLLGRR I NWDLIEE HWD DI 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 816 LR F A T SI RT GTV T AS AM LR R L SA Y P RQN G L AL ALRELGR LE R SI F M LD W L R D I DLRR RT QAGLNKGEAR N ALARA L FF NQ 895
Cdd:pfam01526 240 LR V A A SI KL GTV S AS TI LR K L GS Y S RQN P L YK ALRELGR II R TL F L LD Y L D D P DLRR EI QAGLNKGEAR H ALARA I FF GK 319
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 896 L GE L RDRR F E N Q TY RAS G LNL LVA AI I LWNT R YL EM AL ADI ----- ATP DE IARHIA PLGWEHI S L T G D Y 960
Cdd:pfam01526 320 G GE I RDRR R E E Q EK RAS A LNL VAN AI V LWNT V YL QR AL EQL raege DVT DE DLARLS PLGWEHI N L F G R Y 389
DUF4158
pfam13700 Domain of unknown function (DUF4158); The exact function of this domain is not clear, but it ...
20-169
5.90e-49
Domain of unknown function (DUF4158); The exact function of this domain is not clear, but it frequently occurs as an N-terminal region of transposase 3 or IS3 family of insertion elements.
Pssm-ID: 433413
Cd Length: 165
Bit Score: 170.82
E-value: 5.90e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 20 LD E R E I AR HY TL TSD DL EIVGR RRG DAT RLGFA ML L LTM R W PGR A L EAG E VP PA P V LA Y V A R QLG VA P E A F A D YA H R D QT 99
Cdd:pfam13700 16 DS E E E L AR YF TL SDE DL ALINQ RRG PHN RLGFA VQ L CYF R Y PGR F L SDP E DV PA A V VE Y I A E QLG LD P S A L A R YA R R E QT 95
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 100 RREHL V EIR RSH G F R I F DRDAF RE VAAFAIPI A QTIVH P GQMAGVIVD ELRRR Q ILLP SSSI LE AVLRR A 169
Cdd:pfam13700 96 RREHL A EIR ELL G Y R P F TDSDY RE LIRWLAQL A TVTDR P IDLFDEAIE ELRRR R ILLP GYTT LE RLVAE A 165
PksD
COG3321 Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
328-905
2.39e-03
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain]
Cd Length: 1386
Bit Score: 42.17
E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 328 RT LTG SC R - I L ID A RTNG V DSLAQIEALDWQRFAV A VE Q AE V L G R P et VD RT A - ELIERH R T V K L -------- F A GPF L N 397
Cdd:COG3321 801 PV LTG LV R q C L AA A GDAV V LPSLRRGEDELAQLLT A LA Q LW V A G V P -- VD WS A l YPGRGR R R V P L ptypfqre D A AAA L L 878
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 398 TFEFRG A G A VQGL L A AL AII A ELYRTGKRR L PDRVPLRFVPSAWRPFVLRDGIVDRA A YELC AL SQ L RERLR A GDIWV A G 477
Cdd:COG3321 879 AAALAA A L A AAAA L G AL LLA A LAAALAAAL L ALAAAAAAALALAAAALAALLALVAL A AAAA AL LA L AAAAA A AAAAL A A 958
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 478 SRQFRNFDSYLIPP A TY AA LREKGPLPL A IETDFERHIEERRTRLDT A IEQVTVL A RQGELPQVR L DENGLIISPLK AA T 557
Cdd:COG3321 959 AEAGALLLLAAAAA A AA AA AAAAAAAAA A AAAAAAAALAAAAALALL A AAALLLA A AAAAAALLA L AALLAAAAAAL AA A 1038
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 558 PP A TEI A RRA A YDRLPRVKITD L L L EVD A WTGFSECFIHRRSGREADDRN AL LTVI LA DGINLGLTRMAETCRG A S L RQL 637
Cdd:COG3321 1039 AA A AAA A AAL A ALAAAAAAAAA L A L ALA A LLLLAALAELALAAAALALAA AL AAAA LA LALAALAAALLLLALL A A L ALA 1118
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 638 A HLHDWHISE A AYGE A LGRLID A HRTMPL AAL WGDGTTSSSDGQQFH A GGRG AA IGDIN A RSGNEPGV A FYTHVSDRYDP 717
Cdd:COG3321 1119 A AAAALLALA A LLAA A AAAAAL A AAAAAA AAL ALAAAAAALAAALAA A LLAA AA LLLAL A LALAAALA A ALAGLAALLLA 1198
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 718 FASRVIA A TAGEAPYVLDGLLYHQTGLTIEEHYTDTGG A SDHVFGLMPFFG y RF A PR L RDIKERRLH L LPGQESGP L LGG 797
Cdd:COG3321 1199 ALLAALL A ALLALALAALAAAAAALLAAAAAAAALALL A LAAAAAAVAALA - AA A AA L LAALAALAL L AAAAGLAA L AAA 1277
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739666854 798 MT A EPI AL GHV AA HWDELLRF A TSIRTGTVT A S A MLRRLS A YPRQNG L AL A LRELGRLERSIFMLDWLRDIDLRRRTQ A G 877
Cdd:COG3321 1278 AA A AAA AL ALA AA AAAAAAAL A ALLAAAAAA A A A AAAAAA A AALAAA L LA A ALAALAAAVAAALALAAAAAAAAAAAA A A 1357
570 580
....*....|....*....|....*...
gi 739666854 878 LNKGEARN A LAR A LFFNQ L GELRDRRFE 905
Cdd:COG3321 1358 AAAAALAA A AGA A AAAAA L ALAALAAAV 1385
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
