phage integrase SAM-like domain-containing protein, partial [Prevotella bivia]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
XerD super family | cl44177 | Site-specific recombinase XerD [Replication, recombination and repair]; |
116-271 | 1.60e-12 | |||
Site-specific recombinase XerD [Replication, recombination and repair]; The actual alignment was detected with superfamily member COG4974: Pssm-ID: 443999 [Multi-domain] Cd Length: 291 Bit Score: 66.17 E-value: 1.60e-12
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Arm-DNA-bind_5 | pfam17293 | Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various ... |
1-76 | 1.82e-05 | |||
Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various tyrosine recombinases. : Pssm-ID: 465401 Cd Length: 87 Bit Score: 42.36 E-value: 1.82e-05
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Name | Accession | Description | Interval | E-value | |||
XerD | COG4974 | Site-specific recombinase XerD [Replication, recombination and repair]; |
116-271 | 1.60e-12 | |||
Site-specific recombinase XerD [Replication, recombination and repair]; Pssm-ID: 443999 [Multi-domain] Cd Length: 291 Bit Score: 66.17 E-value: 1.60e-12
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INTN1_C_like | cd01185 | Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal ... |
210-276 | 1.40e-10 | |||
Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain; IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Pssm-ID: 271185 [Multi-domain] Cd Length: 161 Bit Score: 58.43 E-value: 1.40e-10
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Phage_int_SAM_5 | pfam13102 | Phage integrase SAM-like domain; A family of uncharacterized proteins found by clustering ... |
88-194 | 6.16e-08 | |||
Phage integrase SAM-like domain; A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This family appears related to the N-terminal domain of phage integrases. Pssm-ID: 463787 [Multi-domain] Cd Length: 99 Bit Score: 49.53 E-value: 6.16e-08
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Arm-DNA-bind_5 | pfam17293 | Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various ... |
1-76 | 1.82e-05 | |||
Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various tyrosine recombinases. Pssm-ID: 465401 Cd Length: 87 Bit Score: 42.36 E-value: 1.82e-05
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Name | Accession | Description | Interval | E-value | |||
XerD | COG4974 | Site-specific recombinase XerD [Replication, recombination and repair]; |
116-271 | 1.60e-12 | |||
Site-specific recombinase XerD [Replication, recombination and repair]; Pssm-ID: 443999 [Multi-domain] Cd Length: 291 Bit Score: 66.17 E-value: 1.60e-12
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INTN1_C_like | cd01185 | Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal ... |
210-276 | 1.40e-10 | |||
Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain; IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Pssm-ID: 271185 [Multi-domain] Cd Length: 161 Bit Score: 58.43 E-value: 1.40e-10
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Phage_int_SAM_5 | pfam13102 | Phage integrase SAM-like domain; A family of uncharacterized proteins found by clustering ... |
88-194 | 6.16e-08 | |||
Phage integrase SAM-like domain; A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This family appears related to the N-terminal domain of phage integrases. Pssm-ID: 463787 [Multi-domain] Cd Length: 99 Bit Score: 49.53 E-value: 6.16e-08
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XerC | COG4973 | Site-specific recombinase XerC [Replication, recombination and repair]; |
120-259 | 5.16e-06 | |||
Site-specific recombinase XerC [Replication, recombination and repair]; Pssm-ID: 443998 [Multi-domain] Cd Length: 287 Bit Score: 46.88 E-value: 5.16e-06
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Arm-DNA-bind_5 | pfam17293 | Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various ... |
1-76 | 1.82e-05 | |||
Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various tyrosine recombinases. Pssm-ID: 465401 Cd Length: 87 Bit Score: 42.36 E-value: 1.82e-05
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Blast search parameters | ||||
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