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Conserved domains on  [gi|736894402|ref|WP_034893394|]
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5-oxoprolinase subunit PxpB [Erwinia typographi]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-214 4.52e-71

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 216.16  E-value: 4.52e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   1 MNDCPVISCLGTSALLFDAGGVTTLAQQQRIWALSMA--ASGWKEIREAVPCLNNLLLFFSdtpPRQID--SLREKLLNE 76
Cdd:COG2049    1 MRMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAAlrAAPLPGVVEVVPAYRSLLVHFD---PLVIDpaALAARLRAL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402  77 WNK-NEYLQLEGKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKV 155
Cdd:COG2049   78 LAElDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRAT 157
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 736894402 156 PILDNPLGSVAIGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPALMRPGDKIRFCP 214
Cdd:COG2049  158 PRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-214 4.52e-71

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 216.16  E-value: 4.52e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   1 MNDCPVISCLGTSALLFDAGGVTTLAQQQRIWALSMA--ASGWKEIREAVPCLNNLLLFFSdtpPRQID--SLREKLLNE 76
Cdd:COG2049    1 MRMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAAlrAAPLPGVVEVVPAYRSLLVHFD---PLVIDpaALAARLRAL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402  77 WNK-NEYLQLEGKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKV 155
Cdd:COG2049   78 LAElDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRAT 157
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 736894402 156 PILDNPLGSVAIGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPALMRPGDKIRFCP 214
Cdd:COG2049  158 PRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
5-202 4.68e-65

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 199.67  E-value: 4.68e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402     5 PVISCLGTSALLFDAGGVTTLAQQQRIWAL--SMAASGWKEIREAVPCLNNLLLFFsDTPPRQIDSLREKL--LNEWNKN 80
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALarALRAAPLPGVVELVPGYRSLLVHF-DPLVIDPAALLARLraLEALPLA 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402    81 EYLQLEGKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKVPILDN 160
Cdd:smart00796  80 EALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRV 159
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 736894402   161 PLGSVAIGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPA 202
Cdd:smart00796 160 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
7-204 6.70e-65

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 199.32  E-value: 6.70e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402    7 ISCLGTSALLFDAGGVTTLAQQQRIWALSMA--ASGWKEIREAVPCLNNLLLFFsDTPPRQIDSLREKLLNEWNKNEY-L 83
Cdd:pfam02682   2 IRPAGDRALLVEFGDEIDLALNRRVLALAAAlrAAPLPGVVEVVPGYRSLLVHY-DPLVTDLAALEARLRALLAALEAaA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   84 QLEGKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKVPILDNPLG 163
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 736894402  164 SVAIGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPALM 204
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
10-212 2.68e-50

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 162.33  E-value: 2.68e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   10 LGTSALLFDAGGVTTLAQQQRIWALSMAASGWKEIREAVPCLNNLLLF---FSDTPPrqidsLREKLLNEWNKNEYLQLE 86
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFydmYEVYKH-----LPQRLSSPWEEVKDYEVN 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   87 GKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKVPILDNPLGSVA 166
Cdd:TIGR00370  76 RRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVG 155
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 736894402  167 IGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPALMRPGDKIRF 212
Cdd:TIGR00370 156 IGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-214 4.52e-71

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 216.16  E-value: 4.52e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   1 MNDCPVISCLGTSALLFDAGGVTTLAQQQRIWALSMA--ASGWKEIREAVPCLNNLLLFFSdtpPRQID--SLREKLLNE 76
Cdd:COG2049    1 MRMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAAlrAAPLPGVVEVVPAYRSLLVHFD---PLVIDpaALAARLRAL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402  77 WNK-NEYLQLEGKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKV 155
Cdd:COG2049   78 LAElDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRAT 157
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 736894402 156 PILDNPLGSVAIGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPALMRPGDKIRFCP 214
Cdd:COG2049  158 PRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
5-202 4.68e-65

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 199.67  E-value: 4.68e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402     5 PVISCLGTSALLFDAGGVTTLAQQQRIWAL--SMAASGWKEIREAVPCLNNLLLFFsDTPPRQIDSLREKL--LNEWNKN 80
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALarALRAAPLPGVVELVPGYRSLLVHF-DPLVIDPAALLARLraLEALPLA 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402    81 EYLQLEGKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKVPILDN 160
Cdd:smart00796  80 EALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRV 159
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 736894402   161 PLGSVAIGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPA 202
Cdd:smart00796 160 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
7-204 6.70e-65

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 199.32  E-value: 6.70e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402    7 ISCLGTSALLFDAGGVTTLAQQQRIWALSMA--ASGWKEIREAVPCLNNLLLFFsDTPPRQIDSLREKLLNEWNKNEY-L 83
Cdd:pfam02682   2 IRPAGDRALLVEFGDEIDLALNRRVLALAAAlrAAPLPGVVEVVPGYRSLLVHY-DPLVTDLAALEARLRALLAALEAaA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   84 QLEGKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKVPILDNPLG 163
Cdd:pfam02682  81 APGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 736894402  164 SVAIGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPALM 204
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
10-212 2.68e-50

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 162.33  E-value: 2.68e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   10 LGTSALLFDAGGVTTLAQQQRIWALSMAASGWKEIREAVPCLNNLLLF---FSDTPPrqidsLREKLLNEWNKNEYLQLE 86
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFydmYEVYKH-----LPQRLSSPWEEVKDYEVN 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736894402   87 GKIVELRVDYGGEFGPRMEHVCEHTGLSVESVVELHSTPLYTVFGLGSHPGHCYLEGLDRRLTTPRRKVPILDNPLGSVA 166
Cdd:TIGR00370  76 RRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVG 155
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 736894402  167 IGGSQTSVSASAGPSGWNQIGLTHKAFFDYTASPPALMRPGDKIRF 212
Cdd:TIGR00370 156 IGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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