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Conserved domains on  [gi|736213390|ref|XP_010777894|]
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PREDICTED: telomerase reverse transcriptase [Notothenia coriiceps]

Protein Classification

telomerase reverse transcriptase( domain architecture ID 10659494)

telomerase reverse transcriptase is the catalytic component of the teleromerase holoenzyme complex whose main activity is the elongation of telomeres by acting as a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Telomerase_RBD smart00975
Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organisms are ...
 446-578 2.80e-52

Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organisms are comprised of tandem simple sequence repeats. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition. One major influence on telomere length is the enzyme telomerase. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA.


:

Pssm-ID: 214948  Cd Length: 136  Bit Score: 179.38  E-value: 2.80e-52
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390    446 RVFLFVRECLSTVIPQELWGSDHNRLRFFIRVRGFLRSGKFEKLSLSELMWKMKVNDFDWLKISKTG--RFPPSELSYRT 523
Cdd:smart00975    1 QVVSFLRAILRKLFPLSLWGSRHNKRVFLKNLRRFLSLGRNEKFSLQELMWGIRVSDIPWLAGSKTTtqRVSKSEHEKRQ 80

                            90       100       110       120       130
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 736213390    524 QILGQFLAWLLDGYVVGLVRACFYVTESAGQKNALRFYRQEVWAKLQDLAFRVHL 578
Cdd:smart00975   81 ELLAQFVYWLFDCLVPPLLRSFFYVTESSGQKNKLLYFRHDVWKKLTRPALRRYL 135
TERT cd01648
TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that ...
 801-913 8.59e-39

TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at the chromosome ends protects against the erosion of gene-encoding DNA. Telomerase is not normally expressed in somatic cells. It has been suggested that exogenous TERT may extend the lifespan of, or even immortalize, the cell. However, recent studies have shown that telomerase activity can be induced by a number of oncogenes. Conversely, the oncogene c-myc can be activated in human TERT immortalized cells. Sequence comparisons place the telomerase proteins in the RT family but reveal hallmarks that distinguish them from retroviral and retrotransposon relatives.


:

Pssm-ID: 238826  Cd Length: 119  Bit Score: 140.09  E-value: 8.59e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390  801 YRQCRGIPQGSVVSSLLCCLCYGHMENVLFEGITE--KKGCLMRLVDDFLLITPYLNKAQSFLNILLAG-VPQYGLVVNP 877
Cdd:cd01648    14 YRQKVGIPQGSPLSSLLCSLYYADLENKYLSFLDVidKDSLLLRLVDDFLLITTSLDKAIKFLNLLLRGfINQYKTFVNF 93

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 736213390  878 QKVGVNFQVPGsmgscpgirvLTPHCLFPWCGLLLD 913
Cdd:cd01648    94 DKTQINFSFAQ----------LDSSDLIPWCGLLIN 119
 
Name Accession Description Interval E-value
Telomerase_RBD smart00975
Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organisms are ...
 446-578 2.80e-52

Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organisms are comprised of tandem simple sequence repeats. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition. One major influence on telomere length is the enzyme telomerase. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA.


Pssm-ID: 214948  Cd Length: 136  Bit Score: 179.38  E-value: 2.80e-52
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390    446 RVFLFVRECLSTVIPQELWGSDHNRLRFFIRVRGFLRSGKFEKLSLSELMWKMKVNDFDWLKISKTG--RFPPSELSYRT 523
Cdd:smart00975    1 QVVSFLRAILRKLFPLSLWGSRHNKRVFLKNLRRFLSLGRNEKFSLQELMWGIRVSDIPWLAGSKTTtqRVSKSEHEKRQ 80

                            90       100       110       120       130
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 736213390    524 QILGQFLAWLLDGYVVGLVRACFYVTESAGQKNALRFYRQEVWAKLQDLAFRVHL 578
Cdd:smart00975   81 ELLAQFVYWLFDCLVPPLLRSFFYVTESSGQKNKLLYFRHDVWKKLTRPALRRYL 135
Telomerase_RBD pfam12009
Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organizms are ...
 446-577 4.76e-50

Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organizms are comprised of tandem simple sequence repeats. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition. One major influence on telomere length is the enzyme telomerase. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA.


Pssm-ID: 463428  Cd Length: 133  Bit Score: 173.07  E-value: 4.76e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390   446 RVFLFVRECLSTVIPQELWGSDHNRLRFFIRVRGFLRSGKFEKLSLSELMWKMKVNDFDWLK-ISKTGRFPPSELSYRTQ 524
Cdd:pfam12009    1 QVSAFLRAVLRKLIPLELWGSKHNKRVLLKNVDRFIRLRRFESLSLHELMQGLKVSDFPWLGlPTKNSKLSLSDFEKRQE 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 736213390   525 ILGQFLAWLLDGYVVGLVRACFYVTESAGQKNALRFYRQEVWAKLQDLAFRVH 577
Cdd:pfam12009   81 LLAEFIYWLFDSLLIPLIRSFFYVTESSTHRNRLFYFRHDVWRKLSEPFLRKL 133
TERT cd01648
TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that ...
 801-913 8.59e-39

TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at the chromosome ends protects against the erosion of gene-encoding DNA. Telomerase is not normally expressed in somatic cells. It has been suggested that exogenous TERT may extend the lifespan of, or even immortalize, the cell. However, recent studies have shown that telomerase activity can be induced by a number of oncogenes. Conversely, the oncogene c-myc can be activated in human TERT immortalized cells. Sequence comparisons place the telomerase proteins in the RT family but reveal hallmarks that distinguish them from retroviral and retrotransposon relatives.


Pssm-ID: 238826  Cd Length: 119  Bit Score: 140.09  E-value: 8.59e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390  801 YRQCRGIPQGSVVSSLLCCLCYGHMENVLFEGITE--KKGCLMRLVDDFLLITPYLNKAQSFLNILLAG-VPQYGLVVNP 877
Cdd:cd01648    14 YRQKVGIPQGSPLSSLLCSLYYADLENKYLSFLDVidKDSLLLRLVDDFLLITTSLDKAIKFLNLLLRGfINQYKTFVNF 93

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 736213390  878 QKVGVNFQVPGsmgscpgirvLTPHCLFPWCGLLLD 913
Cdd:cd01648    94 DKTQINFSFAQ----------LDSSDLIPWCGLLIN 119
RVT_1 pfam00078
Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually ...
 803-879 2.48e-07

Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses.


Pssm-ID: 395031 [Multi-domain]  Cd Length: 189  Bit Score: 52.30  E-value: 2.48e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736213390   803 QCRGIPQGSVVSSLLCCLCyghMeNVLFEGITEKKGCLM-RLVDDFLLITPYLNKAQSFLNILLAGVPQYGLVVNPQK 879
Cdd:pfam00078   99 EWKGLPQGLVLSPALFQLF---M-NELLRPLRKRAGLTLvRYADDILIFSKSEEEHQEALEEVLEWLKESGLKINPEK 172
 
Name Accession Description Interval E-value
Telomerase_RBD smart00975
Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organisms are ...
 446-578 2.80e-52

Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organisms are comprised of tandem simple sequence repeats. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition. One major influence on telomere length is the enzyme telomerase. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA.


Pssm-ID: 214948  Cd Length: 136  Bit Score: 179.38  E-value: 2.80e-52
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390    446 RVFLFVRECLSTVIPQELWGSDHNRLRFFIRVRGFLRSGKFEKLSLSELMWKMKVNDFDWLKISKTG--RFPPSELSYRT 523
Cdd:smart00975    1 QVVSFLRAILRKLFPLSLWGSRHNKRVFLKNLRRFLSLGRNEKFSLQELMWGIRVSDIPWLAGSKTTtqRVSKSEHEKRQ 80

                            90       100       110       120       130
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 736213390    524 QILGQFLAWLLDGYVVGLVRACFYVTESAGQKNALRFYRQEVWAKLQDLAFRVHL 578
Cdd:smart00975   81 ELLAQFVYWLFDCLVPPLLRSFFYVTESSGQKNKLLYFRHDVWKKLTRPALRRYL 135
Telomerase_RBD pfam12009
Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organizms are ...
 446-577 4.76e-50

Telomerase ribonucleoprotein complex - RNA binding domain; Telomeres in most organizms are comprised of tandem simple sequence repeats. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition. One major influence on telomere length is the enzyme telomerase. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA.


Pssm-ID: 463428  Cd Length: 133  Bit Score: 173.07  E-value: 4.76e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390   446 RVFLFVRECLSTVIPQELWGSDHNRLRFFIRVRGFLRSGKFEKLSLSELMWKMKVNDFDWLK-ISKTGRFPPSELSYRTQ 524
Cdd:pfam12009    1 QVSAFLRAVLRKLIPLELWGSKHNKRVLLKNVDRFIRLRRFESLSLHELMQGLKVSDFPWLGlPTKNSKLSLSDFEKRQE 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 736213390   525 ILGQFLAWLLDGYVVGLVRACFYVTESAGQKNALRFYRQEVWAKLQDLAFRVH 577
Cdd:pfam12009   81 LLAEFIYWLFDSLLIPLIRSFFYVTESSTHRNRLFYFRHDVWRKLSEPFLRKL 133
TERT cd01648
TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that ...
 801-913 8.59e-39

TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at the chromosome ends protects against the erosion of gene-encoding DNA. Telomerase is not normally expressed in somatic cells. It has been suggested that exogenous TERT may extend the lifespan of, or even immortalize, the cell. However, recent studies have shown that telomerase activity can be induced by a number of oncogenes. Conversely, the oncogene c-myc can be activated in human TERT immortalized cells. Sequence comparisons place the telomerase proteins in the RT family but reveal hallmarks that distinguish them from retroviral and retrotransposon relatives.


Pssm-ID: 238826  Cd Length: 119  Bit Score: 140.09  E-value: 8.59e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390  801 YRQCRGIPQGSVVSSLLCCLCYGHMENVLFEGITE--KKGCLMRLVDDFLLITPYLNKAQSFLNILLAG-VPQYGLVVNP 877
Cdd:cd01648    14 YRQKVGIPQGSPLSSLLCSLYYADLENKYLSFLDVidKDSLLLRLVDDFLLITTSLDKAIKFLNLLLRGfINQYKTFVNF 93

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 736213390  878 QKVGVNFQVPGsmgscpgirvLTPHCLFPWCGLLLD 913
Cdd:cd01648    94 DKTQINFSFAQ----------LDSSDLIPWCGLLIN 119
RVT_1 pfam00078
Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually ...
 803-879 2.48e-07

Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses.


Pssm-ID: 395031 [Multi-domain]  Cd Length: 189  Bit Score: 52.30  E-value: 2.48e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736213390   803 QCRGIPQGSVVSSLLCCLCyghMeNVLFEGITEKKGCLM-RLVDDFLLITPYLNKAQSFLNILLAGVPQYGLVVNPQK 879
Cdd:pfam00078   99 EWKGLPQGLVLSPALFQLF---M-NELLRPLRKRAGLTLvRYADDILIFSKSEEEHQEALEEVLEWLKESGLKINPEK 172
RT_Bac_retron_I cd01646
RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The ...
 800-879 6.39e-05

RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.


Pssm-ID: 238824 [Multi-domain]  Cd Length: 158  Bit Score: 44.63  E-value: 6.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390  800 TYRQCRGIPQGSVVSSLLCCLCYGHMENVLFEGITEKKGClmRLVDDFLLITPYLNKAQSFLNILLAGVPQYGLVVNPQK 879
Cdd:cd01646    47 QYGQTNGLPIGPLTSRFLANIYLNDVDHELKSKLKGVDYV--RYVDDIRIFADSKEEAEEILEELKEFLAELGLSLNLSK 124
RT_G2_intron cd01651
RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA ...
 805-879 6.55e-04

RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).


Pssm-ID: 238828 [Multi-domain]  Cd Length: 226  Bit Score: 42.57  E-value: 6.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736213390  805 RGIPQGSVVSSLLCCLCYGHMENVLFEGITE---------KKGCLMRLVDDFLLITPY-------LNKAQSFLNILlagv 868
Cdd:cd01651   125 KGTPQGGVISPLLANIYLHELDKFVEEKLKEyydtsdpkfRRLRYVRYADDFVIGVRGpkeaeeiKELIREFLEEL---- 200

                          90
                  ....*....|.
gi 736213390  869 pqyGLVVNPQK 879
Cdd:cd01651   201 ---GLELNPEK 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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