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Conserved domains on  [gi|733918056|ref|XP_010720960|]
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zinc finger SWIM domain-containing protein 3-like [Meleagris gallopavo]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PX_SNX21 cd07301
The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a ...
584-695 7.10e-67

The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.


:

Pssm-ID: 132834  Cd Length: 112  Bit Score: 217.36  E-value: 7.10e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 584 LLFEVTSASVVSERSSKYVLYTIYLIRSGHLDKAPAAISRRYSDFERLNRRLRGRFGCDMAGIAFPRKRLRRNFTAETIA 663
Cdd:cd07301    1 LLFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAETIA 80
                         90       100       110
                 ....*....|....*....|....*....|..
gi 733918056 664 KRSRAFEQFLSHLHSIAEIRRSPEFLEFFFLQ 695
Cdd:cd07301   81 KRSRAFEQFLCHLHSLPELRASPAFLEFFYLR 112
 
Name Accession Description Interval E-value
PX_SNX21 cd07301
The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a ...
584-695 7.10e-67

The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.


Pssm-ID: 132834  Cd Length: 112  Bit Score: 217.36  E-value: 7.10e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 584 LLFEVTSASVVSERSSKYVLYTIYLIRSGHLDKAPAAISRRYSDFERLNRRLRGRFGCDMAGIAFPRKRLRRNFTAETIA 663
Cdd:cd07301    1 LLFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAETIA 80
                         90       100       110
                 ....*....|....*....|....*....|..
gi 733918056 664 KRSRAFEQFLSHLHSIAEIRRSPEFLEFFFLQ 695
Cdd:cd07301   81 KRSRAFEQFLCHLHSLPELRASPAFLEFFYLR 112
PX pfam00787
PX domain; PX domains bind to phosphoinositides.
621-692 5.39e-11

PX domain; PX domains bind to phosphoinositides.


Pssm-ID: 459940  Cd Length: 84  Bit Score: 59.18  E-value: 5.39e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 733918056  621 ISRRYSDFERLNRRLRGRFGcdMAGI-AFPRKRLRRNFTAETIAKRSRAFEQFLSHLHSIAEIRRSPEFLEFF 692
Cdd:pfam00787  11 VRRRYSDFVELHKKLLRKFP--SVIIpPLPPKRWLGRYNEEFIEKRRKGLEQYLQRLLQHPELRNSEVLLEFL 81
PX smart00312
PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function ...
598-692 3.51e-09

PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.


Pssm-ID: 214610  Cd Length: 105  Bit Score: 55.04  E-value: 3.51e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056   598 SSKYVLYTIYLIRSGHLDKApaAISRRYSDFERLNRRLRGRFGcDMAGIAFPRKRL---RRNFTAETIAKRSRAFEQFLS 674
Cdd:smart00312   9 DGKHYYYVIEIETKTGLEEW--TVSRRYSDFLELHSKLKKHFP-RSILPPLPGKKLfgrLNNFSEEFIEKRRRGLEKYLQ 85
                           90
                   ....*....|....*....
gi 733918056   675 HLHSIAE-IRRSPEFLEFF 692
Cdd:smart00312  86 SLLNHPElINHSEVVLEFL 104
 
Name Accession Description Interval E-value
PX_SNX21 cd07301
The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a ...
584-695 7.10e-67

The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.


Pssm-ID: 132834  Cd Length: 112  Bit Score: 217.36  E-value: 7.10e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 584 LLFEVTSASVVSERSSKYVLYTIYLIRSGHLDKAPAAISRRYSDFERLNRRLRGRFGCDMAGIAFPRKRLRRNFTAETIA 663
Cdd:cd07301    1 LLFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAETIA 80
                         90       100       110
                 ....*....|....*....|....*....|..
gi 733918056 664 KRSRAFEQFLSHLHSIAEIRRSPEFLEFFFLQ 695
Cdd:cd07301   81 KRSRAFEQFLCHLHSLPELRASPAFLEFFYLR 112
PX_SNX20_21_like cd07279
The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21; The PX domain ...
584-694 8.06e-43

The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.


Pssm-ID: 132812  Cd Length: 112  Bit Score: 150.94  E-value: 8.06e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 584 LLFEVTSASVVSERSSKYVLYTIYLIRSGHLDKAPAAISRRYSDFERLNRRLRGRFGCDMAGIAFPRKRLRRNFTAETIA 663
Cdd:cd07279    1 LKFEIVSARTVKEGEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSELIA 80
                         90       100       110
                 ....*....|....*....|....*....|.
gi 733918056 664 KRSRAFEQFLSHLHSIAEIRRSPEFLEFFFL 694
Cdd:cd07279   81 ERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111
PX_SNX20 cd07300
The phosphoinositide binding Phox Homology domain of Sorting Nexin 20; The PX domain is a ...
584-697 1.86e-29

The phosphoinositide binding Phox Homology domain of Sorting Nexin 20; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX domain of SNX20 binds PIs and targets the SNX20/PSGL-1 complex to endosomes. SNX20 may function in the sorting and cycling of PSGL-1 into endosomes.


Pssm-ID: 132833  Cd Length: 114  Bit Score: 112.99  E-value: 1.86e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 584 LLFEVTSASVVSERSSKYVLYTIYLIRSGHLDKAPAAISRRYSDFERLNRRLRGRFGCDMAGIAFPRKRLRRNFTAETIA 663
Cdd:cd07300    1 LLFEIPSARIIEQTISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEIIA 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 733918056 664 KRSRAFEQFLSHLHSIAEIRRSPEFLEFFFLQDL 697
Cdd:cd07300   81 ERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPEL 114
PX_domain cd06093
The Phox Homology domain, a phosphoinositide binding module; The PX domain is a ...
586-694 2.82e-17

The Phox Homology domain, a phosphoinositide binding module; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.


Pssm-ID: 132768 [Multi-domain]  Cd Length: 106  Bit Score: 78.17  E-value: 2.82e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 586 FEVTSASVVSERSSKYVLYTIYLIRSGHLDKApaaISRRYSDFERLNRRLRGRF-GCDMAgiAFPRKRLRRNFTAETIAK 664
Cdd:cd06093    2 VSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWT---VYRRYSDFEELHEKLKKKFpGVILP--PLPPKKLFGNLDPEFIEE 76
                         90       100       110
                 ....*....|....*....|....*....|
gi 733918056 665 RSRAFEQFLSHLHSIAEIRRSPEFLEFFFL 694
Cdd:cd06093   77 RRKQLEQYLQSLLNHPELRNSEELKEFLEL 106
PX pfam00787
PX domain; PX domains bind to phosphoinositides.
621-692 5.39e-11

PX domain; PX domains bind to phosphoinositides.


Pssm-ID: 459940  Cd Length: 84  Bit Score: 59.18  E-value: 5.39e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 733918056  621 ISRRYSDFERLNRRLRGRFGcdMAGI-AFPRKRLRRNFTAETIAKRSRAFEQFLSHLHSIAEIRRSPEFLEFF 692
Cdd:pfam00787  11 VRRRYSDFVELHKKLLRKFP--SVIIpPLPPKRWLGRYNEEFIEKRRKGLEQYLQRLLQHPELRNSEVLLEFL 81
PX smart00312
PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function ...
598-692 3.51e-09

PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.


Pssm-ID: 214610  Cd Length: 105  Bit Score: 55.04  E-value: 3.51e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056   598 SSKYVLYTIYLIRSGHLDKApaAISRRYSDFERLNRRLRGRFGcDMAGIAFPRKRL---RRNFTAETIAKRSRAFEQFLS 674
Cdd:smart00312   9 DGKHYYYVIEIETKTGLEEW--TVSRRYSDFLELHSKLKKHFP-RSILPPLPGKKLfgrLNNFSEEFIEKRRRGLEKYLQ 85
                           90
                   ....*....|....*....
gi 733918056   675 HLHSIAE-IRRSPEFLEFF 692
Cdd:smart00312  86 SLLNHPElINHSEVVLEFL 104
PX_SNARE cd06897
The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi; The PX domain ...
594-695 5.12e-09

The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.


Pssm-ID: 132807  Cd Length: 108  Bit Score: 54.59  E-value: 5.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 594 VSERSSKYVLYTIYLirsghldKAPAA---ISRRYSDFERLNRRLrgrfgCDMAGIAFP------RKRLRRNFTAETIAK 664
Cdd:cd06897    8 TSVSPKPYTVYNIQV-------RLPLRsytVSRRYSEFVALHKQL-----ESEVGIEPPyplppkSWFLSTSSNPKLVEE 75
                         90       100       110
                 ....*....|....*....|....*....|...
gi 733918056 665 RSRAFEQFLSHL--HSIAEIRRSPEFLEFFFLQ 695
Cdd:cd06897   76 RRVGLEAFLRALlnDEDSRWRNSPAVKEFLNLP 108
PX_SNX16 cd07276
The phosphoinositide binding Phox Homology domain of Sorting Nexin 16; The PX domain is a ...
593-694 1.34e-08

The phosphoinositide binding Phox Homology domain of Sorting Nexin 16; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.


Pssm-ID: 132809  Cd Length: 110  Bit Score: 53.57  E-value: 1.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 593 VVSERSSkyvlYTIYLIRSGHLDKAPAAISRRYSDFERLNRRLRGRFgcdmAG--IAFPRKR-LRRNFTAETIAKRSRAF 669
Cdd:cd07276   13 VMEERAR----FTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMF----PGfrLSLPPKRwFKDNFDPDFLEERQLGL 84
                         90       100
                 ....*....|....*....|....*
gi 733918056 670 EQFLSHLHSIAEIRRSPEFLEFFFL 694
Cdd:cd07276   85 QAFVNNIMAHKDIAKCKLVREFFCL 109
PX_MDM1p cd06876
The phosphoinositide binding Phox Homology domain of yeast MDM1p; The PX domain is a ...
587-691 2.16e-08

The phosphoinositide binding Phox Homology domain of yeast MDM1p; The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132786  Cd Length: 133  Bit Score: 53.47  E-value: 2.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 587 EVTSASVVSERSSKYVLYTIYLIRSGHLDK-APAA---ISRRYSDFERLNRRLRGRFGcDMAGIAFPRKRL--RRNFTAE 660
Cdd:cd06876   21 RVSIQSYISDVEEEGKEFVVYLIEVQRLNNdDQSSgwvVARRYSEFLELHKYLKKRYP-GVLKLDFPQKRKisLKYSKTL 99
                         90       100       110
                 ....*....|....*....|....*....|.
gi 733918056 661 TIAKRSRAFEQFLSHLHSIAEIRRSPEFLEF 691
Cdd:cd06876  100 LVEERRKALEKYLQELLKIPEVCEDEEFRKF 130
PX_SNX15_like cd06881
The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins; The PX ...
586-692 1.80e-06

The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily contain an additional C-terminal kinase domain, similar to human RPK118, which binds sphingosine kinase and the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of proteins such as PRDX3 from the cytoplasm to its site of function in the mitochondria.


Pssm-ID: 132791  Cd Length: 117  Bit Score: 47.70  E-value: 1.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 586 FEVTSASvvseRSSK-YVLYTIYLI---RSGHLDKAPAAISRRYSDFERLNRRL---------RGRFGcdmagiAFPRKR 652
Cdd:cd06881    5 FTVTDTR----RHKKgYTEYKITSKvfsRSVPEDVSEVVVWKRYSDFKKLHRELsrlhkqlylSGSFP------PFPKGK 74
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 733918056 653 LRRNFTAETIAKRSRAFEQFLSHLHSIAEIRRSPEFLEFF 692
Cdd:cd06881   75 YFGRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFF 114
PX_SNX13 cd06873
The phosphoinositide binding Phox Homology domain of Sorting Nexin 13; The PX domain is a ...
582-690 3.11e-06

The phosphoinositide binding Phox Homology domain of Sorting Nexin 13; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, through the RGS domain. It preferentially binds phosphatidylinositol-3-phosphate (PI3P) through the PX domain and is localized in early endosomes. SNX13 is involved in endosomal sorting of EGFR into multivesicular bodies (MVB) for delivery to the lysosome.


Pssm-ID: 132783  Cd Length: 120  Bit Score: 46.88  E-value: 3.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 582 QRLLFEVTSASVVSERSSKYVLYTIYLIR---SGHLDKApaAISRRYSDFERLNRRLRGRFGcDMAGIAFPRKRLRRNFT 658
Cdd:cd06873    3 FKLTAVIINTGIVKEHGKTYAVYAISVTRiypNGQEESW--HVYRRYSDFHDLHMRLKEKFP-NLSKLSFPGKKTFNNLD 79
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 733918056 659 AETIAKRSRAFEQFLSHLHSIAEIRRSP-------EFLE 690
Cdd:cd06873   80 RAFLEKRRKMLNQYLQSLLNPEVLDANPglqeivlDFLE 118
PX_CISK cd06870
The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase; The ...
590-692 1.68e-05

The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.


Pssm-ID: 132780  Cd Length: 109  Bit Score: 44.71  E-value: 1.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 590 SASVVSERSSKYVLYTIYLirsgHLDKAPAAISRRYSDFERLNRRLRGRFGcDMAgIAFPRKRL-RRNFTAETIAKRSRA 668
Cdd:cd06870    9 SSDEDREKKKRFTVYKVVV----SVGRSSWFVFRRYAEFDKLYESLKKQFP-ASN-LKIPGKRLfGNNFDPDFIKQRRAG 82
                         90       100
                 ....*....|....*....|....
gi 733918056 669 FEQFLSHLHSIAEIRRSPEFLEFF 692
Cdd:cd06870   83 LDEFIQRLVSDPKLLNHPDVRAFL 106
PX_KIF16B_SNX23 cd06874
The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23; The ...
621-686 2.57e-05

The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132784  Cd Length: 127  Bit Score: 44.29  E-value: 2.57e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 733918056 621 ISRRYSDFERLNRRLRGRFGcDMAGIAFPRKRLRRNFTAETIAKRSRAFEQFLSHL-HSIAEIRRSP 686
Cdd:cd06874   34 VFRRYSRFRELHKTMKLKYP-EVAALEFPPKKLFGNKSERVAKERRRQLETYLRNFfSVCLKLPACP 99
PX_HS1BP3 cd06868
The phosphoinositide binding Phox Homology domain of HS1BP3; The PX domain is a ...
596-694 6.30e-05

The phosphoinositide binding Phox Homology domain of HS1BP3; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.


Pssm-ID: 132778  Cd Length: 120  Bit Score: 43.17  E-value: 6.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 596 ERSSKYVLYTIYLIRSGHLDKAPA---------AISRRYSDFERLNRRLRGRFgcdmAGIAF---PRKRLRRnfTAETIA 663
Cdd:cd06868   15 KTSSGHVLYQIVVVTRLAAFKSAKhkeedvvqfMVSKKYSEFEELYKKLSEKY----PGTILpplPRKALFV--SESDIR 88
                         90       100       110
                 ....*....|....*....|....*....|.
gi 733918056 664 KRSRAFEQFLSHLHSIAEIRRSPEFLEFFFL 694
Cdd:cd06868   89 ERRAAFNDFMRFISKDEKLANCPELLEFLGV 119
PX_UP2_fungi cd06869
The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins; The PX ...
583-693 8.66e-05

The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.


Pssm-ID: 132779  Cd Length: 119  Bit Score: 42.65  E-value: 8.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 583 RLLFEVTSASVVSERSSKYVLYtiYLIRSGHLDKAPAA--ISRRYSDFERLNRRLRGRF-GCDMAgiAFPRK-RLRRnft 658
Cdd:cd06869   14 ETAGRLSSKKAYFVNRSKHHYE--FIIRVRREGEEYRTiyVARRYSDFKKLHHDLKKEFpGKKLP--KLPHKdKLPR--- 86
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 733918056 659 aetiaKRSR-AFEQFLSHLHSIAEIRRSPEFLEFFF 693
Cdd:cd06869   87 -----EKLRlSLRQYLRSLLKDPEVAHSSILQEFLT 117
PX_SNX19 cd06893
The phosphoinositide binding Phox Homology domain of Sorting Nexin 19; The PX domain is a ...
598-691 1.36e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 19; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found in type-1 diabetes. It inhibits the conversion of phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2] to PI(3,4,5)P3, which leads in the decrease of protein phosphorylation in the Akt signaling pathway, resulting in apoptosis. SNX19 may also be implicated in coronary heart disease and thyroid oncocytic tumors.


Pssm-ID: 132803 [Multi-domain]  Cd Length: 132  Bit Score: 42.53  E-value: 1.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 598 SSKYVLYTI-----YLIR-SGHLDKAPAA------ISRRYSDF----ERLNRRLRGRFGCDMAGiafPRKRLRR----NF 657
Cdd:cd06893   18 THPYTLYTVqyetiLDVQsEQNPNAASEQplathtVNRRFREFltlqTRLEENPKFRKIMNVKG---PPKRLFDlpfgNM 94
                         90       100       110
                 ....*....|....*....|....*....|....
gi 733918056 658 TAETIAKRSRAFEQFLSHLHSIAEIRRSPEFLEF 691
Cdd:cd06893   95 DKDKIEARRGLLETFLRQLCSIPEISNSEEVQEF 128
PX_MONaKA cd06871
The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain ...
604-673 1.54e-04

The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.


Pssm-ID: 132781  Cd Length: 120  Bit Score: 41.96  E-value: 1.54e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 733918056 604 YTIYLIR--SGHLDKAPAAISRRYSDFERLNRRLRgrfgcdMAGI--AFPRKRLRRNFTAETIAKRSRAFEQFL 673
Cdd:cd06871   21 HTEYIIRvqRGPSPENSWQVIRRYNDFDLLNASLQ------ISGIslPLPPKKLIGNMDREFIAERQQGLQNYL 88
PX_SNX15 cd07288
The phosphoinositide binding Phox Homology domain of Sorting Nexin 15; The PX domain is a ...
623-692 4.92e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 15; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein.


Pssm-ID: 132821  Cd Length: 118  Bit Score: 40.72  E-value: 4.92e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 733918056 623 RRYSDFERLNRRL----RGRFGCDMAGIAFPRKRLRRNFTAETIAKRSRAFEQFLSHLHSIAEIRRSPEFLEFF 692
Cdd:cd07288   42 KRYSDLKKLHGELaythRNLFRRQEEFPPFPRAQVFGRFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFF 115
PX_SNX9_18_like cd06862
The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18; The PX domain is ...
604-696 1.24e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1.


Pssm-ID: 132772  Cd Length: 125  Bit Score: 39.61  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 604 YTIYLIRSGHLDkapAAISRRYSDFERLNRRLRGRFGCdmagIAFPR---KRLRRNFTAETIAKRSRAFEQFLSHL--HS 678
Cdd:cd06862   20 FIAYQITPTHTN---VTVSRRYKHFDWLYERLVEKYSC----IAIPPlpeKQVTGRFEEDFIEKRRERLELWMNRLarHP 92
                         90
                 ....*....|....*...
gi 733918056 679 IaeIRRSPEFLEFFFLQD 696
Cdd:cd06862   93 V--LSQSEVFRHFLTCTD 108
PX_SNX1_2_like cd06859
The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2; The PX domain is ...
587-691 2.46e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex.


Pssm-ID: 132769 [Multi-domain]  Cd Length: 114  Bit Score: 38.33  E-value: 2.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 587 EVTSASVVSERSSKYVLYTIYLIRSGHLDKAPAAI-SRRYSDFERLNRRLRGRFgcdmAGIAF---PRKRL--RRNFTAE 660
Cdd:cd06859    4 SVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSvLRRYSDFLWLYERLVEKY----PGRIVpppPEKQAvgRFKVKFE 79
                         90       100       110
                 ....*....|....*....|....*....|.
gi 733918056 661 TIAKRSRAFEQFLSHLHSIAEIRRSPEFLEF 691
Cdd:cd06859   80 FIEKRRAALERFLRRIAAHPVLRKDPDFRLF 110
PX_SNX22 cd06880
The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a ...
593-691 5.22e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexin 22; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.


Pssm-ID: 132790  Cd Length: 110  Bit Score: 37.25  E-value: 5.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 593 VVSERSSKYVLYTIYLIRSG--HLdkapaaISRRYSDFERLNRRLRGRfgCDMAGiaFPRKRLrRNFTAETIAKRSRAFE 670
Cdd:cd06880   11 EVDESEKPYTVFTIEVLVNGrrHT------VEKRYSEFHALHKKLKKS--IKTPD--FPPKRV-RNWNPKVLEQRRQGLE 79
                         90       100
                 ....*....|....*....|.
gi 733918056 671 QFLSHLHSIAEIRRspEFLEF 691
Cdd:cd06880   80 AYLQGLLKINELPK--QLLDF 98
PX_SNX17_31 cd06885
The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31; The PX domain ...
589-701 7.73e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some members of the low-density lipoprotein receptor (LDLR) family such as LDLR, VLDLR, ApoER2, and others, regulating their endocytosis. It also binds P-selectin and may regulate its lysosomal degradation. SNX17 is highly expressed in neurons. It binds amyloid precursor protein (APP) and may be involved in its intracellular trafficking and processing to amyloid beta peptide, which plays a central role in the pathogenesis of Alzheimer's disease. The biological function of SNX31 is unknown.


Pssm-ID: 132795  Cd Length: 104  Bit Score: 36.92  E-value: 7.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733918056 589 TSASVVSERSSKYVLYTIYLIRSGHLdkapaaiSRRYSDFERLNRRLRGRFGcDMAGIAFPRKRLRRnFTAETIAKRSRA 668
Cdd:cd06885    6 DTQELSDEGGSTYVAYNIHINGVLHC-------SVRYSQLHGLNEQLKKEFG-NRKLPPFPPKKLLP-LTPAQLEERRLQ 76
                         90       100       110
                 ....*....|....*....|....*....|...
gi 733918056 669 FEQFLSHLHSIAEIRRSPEFLEFfflqdLRAAQ 701
Cdd:cd06885   77 LEKYLQAVVQDPRIANSDIFNSF-----LLNAQ 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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