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Conserved domains on  [gi|733386272|ref|YP_009111455|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Asiotmethis jubatus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 2.81e-42

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 134.52  E-value: 2.81e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   3 TLSMSFMVSFLVPMLVMMLATILSKKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 733386272  83 SSNLMIWTSATLFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 2.81e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 134.52  E-value: 2.81e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   3 TLSMSFMVSFLVPMLVMMLATILSKKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 733386272  83 SSNLMIWTSATLFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.40e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 91.72  E-value: 1.40e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   19 MMLATILSKKmINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLMIWTSAtLFFIM 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIA 78

                          90
                  ....*....|....*.
gi 733386272   99 VLLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 1.81e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 82.09  E-value: 1.81e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   8 FMVSFLVPMLVMMLATILSKKMiNDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:COG0838   12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                         90       100
                 ....*....|....*....|....*...
gi 733386272  88 IWTSAtLFFIMVLLGGLYHEWNQGALQW 115
Cdd:COG0838   91 GLIEM-LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 2.81e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 134.52  E-value: 2.81e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   3 TLSMSFMVSFLVPMLVMMLATILSKKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 733386272  83 SSNLMIWTSATLFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 1.43e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 128.05  E-value: 1.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   1 MLTLSMSFMVSFLVPMLVMMLATILSKKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 733386272  81 LKSSNLMIWTSATLFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.66e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 120.10  E-value: 1.66e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   1 MLTLSMSFMVSFLVPMLVMMLATILSKKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 733386272  81 LKSSNLMIWTSATLFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 2.36e-33

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 112.26  E-value: 2.36e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   1 MLTLSMSFMVSFLVPMLVMMLATILSKKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVII 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 733386272  81 LKSSNLMIWTSATLFFIMVLLGGLYHEWNQGALQWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-117 1.22e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 97.70  E-value: 1.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   2 LTLSMSFMVSFLVPMLVMMLATILSKKMINdREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIIL 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 733386272  82 KSSNLMIWTSATLFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-116 5.52e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 96.10  E-value: 5.52e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   1 MLTLSMsFMVSFLVPMLVMMLATILSKkMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVII 80
Cdd:MTH00113   1 MNLISM-LTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 78

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 733386272  81 LKSSNLMIWTSATLFFIMVLLGGLYHEWNQGALQWA 116
Cdd:MTH00113  79 INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 16-117 6.34e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 95.76  E-value: 6.34e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272  16 MLVMMLATILS----------KKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPI---VIILK 82
Cdd:MTH00136   5 TTILTITIALSlilaivsfwlPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgDQLPS 84

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 733386272  83 SSNLMIWTSATLffiMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00136  85 PLLTFFWATAVL---ILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 1.67e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 94.66  E-value: 1.67e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   1 MLTLSMSFMVSFLVPMLVMMLATILSKKMInDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVII 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 733386272  81 LKSSNLMIWTSATLFFIMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.40e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 91.72  E-value: 1.40e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   19 MMLATILSKKmINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLMIWTSAtLFFIM 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEM-LIFIA 78

                          90
                  ....*....|....*.
gi 733386272   99 VLLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 3.04e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 91.59  E-value: 3.04e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272  16 MLVMMLATILSKKMIN----------DREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPI---VIILK 82
Cdd:MTH00069   3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 733386272  83 SSNLMIWTSATLffiMVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00069  83 PTNTLFWSTLIL---ILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 2.16e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 89.19  E-value: 2.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   1 MLTLSMSFMVSFLVPMLVMMLAtILSKKMINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVII 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIA-FWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 733386272  81 LKSSNLMIWtsATLFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00203  80 NQLSSLSLL--LAFLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 1.81e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 82.09  E-value: 1.81e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   8 FMVSFLVPMLVMMLATILSKKMiNDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:COG0838   12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                         90       100
                 ....*....|....*....|....*...
gi 733386272  88 IWTSAtLFFIMVLLGGLYHEWNQGALQW 115
Cdd:COG0838   91 GLIEM-LVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-116 2.94e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 81.45  E-value: 2.94e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   8 FMVSFLVPMLVMMLATILSKKMiNDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWL 93

                         90       100
                 ....*....|....*....|....*....
gi 733386272  88 IWTSAtLFFIMVLLGGLYHEWNQGALQWA 116
Cdd:PRK06602  94 GFVEA-MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-115 3.10e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 73.56  E-value: 3.10e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   8 FMVSFLVPMLVMMLATILSKKmINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLM 87
Cdd:MTH00018   7 LIFSVVLSALFSGASYFLGVK-QPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPF 85

                         90       100
                 ....*....|....*....|....*....
gi 733386272  88 -IWTSATLFFIMVLlgGLYHEWNQGALQW 115
Cdd:MTH00018  86 gFWTMVGFLFILTL--GLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-115 2.60e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 71.66  E-value: 2.60e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   4 LSMSFMVSFLVPMLVMMLATILSKK------MINDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPI 77
Cdd:MTH00055   1 MSMEFLGIFILLLFSIGLSTVISGAsyivgvKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 733386272  78 VIILKSSNLM-IWTsaTLFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00055  81 CVVYNQIGLFgFWV--MYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 1.13e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 64.95  E-value: 1.13e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLM-IWTSATlfFIMVLLGGLYHEWNQ 110
Cdd:MTH00030  40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIK 117


                 ....*
gi 733386272 111 GALQW 115
Cdd:MTH00030 118 GGLEW 122
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
8-115 1.65e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 48.89  E-value: 1.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   8 FMVSFLVPMLVMMLATILSKKMIN---DREKSSPFECGFDP-KSSARMpfSLRFFLIAAIFLIFDIEIALILPIVIILKS 83
Cdd:PRK08489  17 LVLTFVAFFLTTRLARFISRKLAQkntEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFKL 94

                         90       100       110
                 ....*....|....*....|....*....|..
gi 733386272  84 SNLMIWTSATLFFIMVLLGGLYhEWNQGALQW 115
Cdd:PRK08489  95 LGLFGLIEMLLFIVLLTIGFIY-AWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 2.02e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 48.51  E-value: 2.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272  19 MMLATILSKKMINdREKSSPFECGFDPKSSARMP--FSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLMIWTSATLFF 96
Cdd:PRK07928  22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFM 100

                         90
                 ....*....|....*....
gi 733386272  97 IMVLLGGLYhEWNQGALQW 115
Cdd:PRK07928 101 LTVFVAYAY-VWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 1.17e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 46.66  E-value: 1.17e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLMIWTSATLFFIMVLLGGLYhEWNQG 111
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAY-AWKKK 117


                 ....
gi 733386272 112 ALQW 115
Cdd:PRK07756 118 VLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 5.00e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.50  E-value: 5.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272   1 MLTLSMSFMVSFLVPMLVMMLATILSKKMiNDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVII 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 733386272  81 LKSSNLMIWtsatlFFIMVLLGGLYHEWNQGALQW 115
Cdd:MTH00092  80 DFSSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 1.11e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 36.33  E-value: 1.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVIILKSSNLMIWTSATLFFIMVLLgGLYHEWNQG 111
Cdd:PRK06432  60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLF-AVYYAFKMG 138


                 ....
gi 733386272 112 ALQW 115
Cdd:PRK06432 139 YMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 30-115 5.78e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 34.10  E-value: 5.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 733386272  30 INDREKSSPFECGFDPKSSARMPFSLRFFLIAAIFLIFDIEIALILPIVI-ILKSSNLMIWtsatLFFIMVLLGGLYHEW 108
Cdd:MTH00060  32 SGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFqGLLFYNFWYY----YFFLLLLFLGFVVEL 107


                 ....*..
gi 733386272 109 NQGALQW 115
Cdd:MTH00060 108 FSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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