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Conserved domains on  [gi|731188583|ref|YP_009111318|]
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P4 [Sauropus yellowing virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Luteo_Vpg super family cl03297
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 47-141 5.75e-20

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


The actual alignment was detected with superfamily member pfam01659:

Pssm-ID: 279928  Cd Length: 105  Bit Score: 79.58  E-value: 5.75e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 731188583   47 ELPEGLCKARLLSLTRTTSKAVPMEQSSSGRIYQKASHCQQECLKPTMSIKSSWSTYA-SSVNPLPQRKGQSLMNWTPTA 125
Cdd:pfam01659   2 EFLDDEAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSlSHARPLPIPPALSLLSSTPIA 81

                          90
                  ....*....|....*.
gi 731188583  126 NLMRLSPLSENSPSPK 141
Cdd:pfam01659  82 KNHPSSATLIPSKLAR 97
 
Name Accession Description Interval E-value
Luteo_Vpg pfam01659
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 47-141 5.75e-20

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


Pssm-ID: 279928  Cd Length: 105  Bit Score: 79.58  E-value: 5.75e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 731188583   47 ELPEGLCKARLLSLTRTTSKAVPMEQSSSGRIYQKASHCQQECLKPTMSIKSSWSTYA-SSVNPLPQRKGQSLMNWTPTA 125
Cdd:pfam01659   2 EFLDDEAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSlSHARPLPIPPALSLLSSTPIA 81

                          90
                  ....*....|....*.
gi 731188583  126 NLMRLSPLSENSPSPK 141
Cdd:pfam01659  82 KNHPSSATLIPSKLAR 97
 
Name Accession Description Interval E-value
Luteo_Vpg pfam01659
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 47-141 5.75e-20

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


Pssm-ID: 279928  Cd Length: 105  Bit Score: 79.58  E-value: 5.75e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 731188583   47 ELPEGLCKARLLSLTRTTSKAVPMEQSSSGRIYQKASHCQQECLKPTMSIKSSWSTYA-SSVNPLPQRKGQSLMNWTPTA 125
Cdd:pfam01659   2 EFLDDEAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSlSHARPLPIPPALSLLSSTPIA 81

                          90
                  ....*....|....*.
gi 731188583  126 NLMRLSPLSENSPSPK 141
Cdd:pfam01659  82 KNHPSSATLIPSKLAR 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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