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Conserved domains on  [gi|727493964|ref|XP_010423025|]
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PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial-like [Camelina sativa]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11441299)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant; similar to sulfide:quinone oxidoreductase which catalyzes the oxidation of hydrogen sulfide using quinone as the electron acceptor

EC:  1.6.-.-
Gene Ontology:  GO:0003954|GO:0006116
PubMed:  15590775|28181562

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
81-495 4.51e-106

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


:

Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 322.08  E-value: 4.51e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  81 RPRVCILGGGFGGLYTALRLESLVwpdDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIKFLRDR 160
Cdd:COG1252    1 MKRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 161 VKTLlpcDHvgvngsesfiTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIKLNEKLSKLERKN 240
Cdd:COG1252   78 VTGI---DP----------EARTVTLADGRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 241 fKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSK----------NILTSAPNGNREAAMKVLMSRKVQLLLG 310
Cdd:COG1252  145 -ERRRLLTIVVVGGGPTGVELAGELAELLRKLLRYPGIDPDKvritlveagpRILPGLGEKLSEAAEKELEKRGVEVHTG 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 311 YLVKSIkrasdseEDEGYLLElqpaerglESQTIEADIVLWTVGAK--PLLTKLEpsgpnvLPLNARGQAETDETLRVKG 388
Cdd:COG1252  224 TRVTEV-------DADGVTLE--------DGEEIPADTVIWAAGVKapPLLADLG------LPTDRRGRVLVDPTLQVPG 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 389 HPRIFALGDSSSLRESNGKLLPTTAQVAFQEADFAGWNIWAAINNRPLLPFRFQNLGEMMTLGRYDAAISpsfIEGLTLE 468
Cdd:COG1252  283 HPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD---VGGLKLS 359

                        410       420
                 ....*....|....*....|....*..
gi 727493964 469 GPIGHAARKLAYLIRLPTDEHRLKVGI 495
Cdd:COG1252  360 GFLAWLLKRAIHLYFLPGFRGRLRVLL 386
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
81-495 4.51e-106

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 322.08  E-value: 4.51e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  81 RPRVCILGGGFGGLYTALRLESLVwpdDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIKFLRDR 160
Cdd:COG1252    1 MKRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 161 VKTLlpcDHvgvngsesfiTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIKLNEKLSKLERKN 240
Cdd:COG1252   78 VTGI---DP----------EARTVTLADGRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 241 fKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSK----------NILTSAPNGNREAAMKVLMSRKVQLLLG 310
Cdd:COG1252  145 -ERRRLLTIVVVGGGPTGVELAGELAELLRKLLRYPGIDPDKvritlveagpRILPGLGEKLSEAAEKELEKRGVEVHTG 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 311 YLVKSIkrasdseEDEGYLLElqpaerglESQTIEADIVLWTVGAK--PLLTKLEpsgpnvLPLNARGQAETDETLRVKG 388
Cdd:COG1252  224 TRVTEV-------DADGVTLE--------DGEEIPADTVIWAAGVKapPLLADLG------LPTDRRGRVLVDPTLQVPG 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 389 HPRIFALGDSSSLRESNGKLLPTTAQVAFQEADFAGWNIWAAINNRPLLPFRFQNLGEMMTLGRYDAAISpsfIEGLTLE 468
Cdd:COG1252  283 HPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD---VGGLKLS 359

                        410       420
                 ....*....|....*....|....*..
gi 727493964 469 GPIGHAARKLAYLIRLPTDEHRLKVGI 495
Cdd:COG1252  360 GFLAWLLKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 82-420 3.61e-37

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 138.99  E-value: 3.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964   82 PRVCILGGGFGGLYTALRLeslvwpDDKKPQVVLVDQSERFV-FKPMLYELLSGEVDVWEIAPRFSDLLT--NTGIKFLR 158
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTL------AQLGGKVTLIEDEGTCPyGGCVLSKALLGAAEAPEIASLWADLYKrkEEVVKKLN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  159 DRVKTLLpcdhvGVNGSESFITGGTVLLE-----SGFKIEYDWLVLALGAESKLDVVPGAMELAFPFY-TLEDAIKLNEK 232
Cdd:pfam07992  75 NGIEVLL-----GTEVVSIDPGAKKVVLEelvdgDGETITYDRLVIATGARPRLPPIPGVELNVGFLVrTLDSAEALRLK 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  233 LSKLerknfkdgsaiKVAVVGCGYAGVELAATISERLQDRGIVQSinvSKNILTSAPNGNREAAMKVLMSRKVQLLLGYL 312
Cdd:pfam07992 150 LLPK-----------RVVVVGGGYIGVELAAALAKLGKEVTLIEA---LDRLLRAFDEEISAALEKALEKNGVEVRLGTS 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  313 VKSIKRasdseEDEGYLLELQpaerglESQTIEADIVLWTVGAKPLLTKLEPSGpnvLPLNARGQAETDETLRVKgHPRI 392
Cdd:pfam07992 216 VKEIIG-----DGDGVEVILK------DGTEIDADLVVVAIGRRPNTELLEAAG---LELDERGGIVVDEYLRTS-VPGI 280

                         330       340
                  ....*....|....*....|....*...
gi 727493964  393 FALGDSsslresnGKLLPTTAQVAFQEA 420
Cdd:pfam07992 281 YAAGDC-------RVGGPELAQNAVAQG 301
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 80-503 3.65e-30

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 122.18  E-value: 3.65e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  80 KRPRVCILGGGFGGLYTALRLeslvwpDDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIKFLRD 159
Cdd:PTZ00318   9 KKPNVVVLGTGWAGAYFVRNL------DPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 160 RVKTLLP------CDHVGVNGSEsfitggtvlLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIKLNEKL 233
Cdd:PTZ00318  83 VVYDVDFeekrvkCGVVSKSNNA---------NVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRI 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 234 SK-LERKNFKDGSA------IKVAVVGCGYAGVELAATISERLQDRgivqsinvSKNILTSAPNGNR----EAAMKVLMS 302
Cdd:PTZ00318 154 VQcIERASLPTTSVeerkrlLHFVVVGGGPTGVEFAAELADFFRDD--------VRNLNPELVEECKvtvlEAGSEVLGS 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 303 RKvQLLLGYLVKSIKRASDSEEDEGYLLELQPAERGLES-QTIEADIVLWTVGAKP-LLTKLEPSGPNvlplnARGQAET 380
Cdd:PTZ00318 226 FD-QALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDgEVIPTGLVVWSTGVGPgPLTKQLKVDKT-----SRGRISV 299

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 381 DETLRVKGHPRIFALGDSSSLRESNgklLPTTAQVAFQEADFAGWNIWAAINNRPLL-PFRFQNLGEMMTLGRYDAAISp 459
Cdd:PTZ00318 300 DDHLRVKPIPNVFALGDCAANEERP---LPTLAQVASQQGVYLAKEFNNELKGKPMSkPFVYRSLGSLAYLGNYSAIVQ- 375

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 727493964 460 sfIEGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWfAKSAV 503
Cdd:PTZ00318 376 --LGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNW-AGTAI 416
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
81-495 4.51e-106

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 322.08  E-value: 4.51e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  81 RPRVCILGGGFGGLYTALRLESLVwpdDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIKFLRDR 160
Cdd:COG1252    1 MKRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 161 VKTLlpcDHvgvngsesfiTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIKLNEKLSKLERKN 240
Cdd:COG1252   78 VTGI---DP----------EARTVTLADGRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 241 fKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSK----------NILTSAPNGNREAAMKVLMSRKVQLLLG 310
Cdd:COG1252  145 -ERRRLLTIVVVGGGPTGVELAGELAELLRKLLRYPGIDPDKvritlveagpRILPGLGEKLSEAAEKELEKRGVEVHTG 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 311 YLVKSIkrasdseEDEGYLLElqpaerglESQTIEADIVLWTVGAK--PLLTKLEpsgpnvLPLNARGQAETDETLRVKG 388
Cdd:COG1252  224 TRVTEV-------DADGVTLE--------DGEEIPADTVIWAAGVKapPLLADLG------LPTDRRGRVLVDPTLQVPG 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 389 HPRIFALGDSSSLRESNGKLLPTTAQVAFQEADFAGWNIWAAINNRPLLPFRFQNLGEMMTLGRYDAAISpsfIEGLTLE 468
Cdd:COG1252  283 HPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD---VGGLKLS 359

                        410       420
                 ....*....|....*....|....*..
gi 727493964 469 GPIGHAARKLAYLIRLPTDEHRLKVGI 495
Cdd:COG1252  360 GFLAWLLKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 82-420 3.61e-37

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 138.99  E-value: 3.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964   82 PRVCILGGGFGGLYTALRLeslvwpDDKKPQVVLVDQSERFV-FKPMLYELLSGEVDVWEIAPRFSDLLT--NTGIKFLR 158
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTL------AQLGGKVTLIEDEGTCPyGGCVLSKALLGAAEAPEIASLWADLYKrkEEVVKKLN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  159 DRVKTLLpcdhvGVNGSESFITGGTVLLE-----SGFKIEYDWLVLALGAESKLDVVPGAMELAFPFY-TLEDAIKLNEK 232
Cdd:pfam07992  75 NGIEVLL-----GTEVVSIDPGAKKVVLEelvdgDGETITYDRLVIATGARPRLPPIPGVELNVGFLVrTLDSAEALRLK 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  233 LSKLerknfkdgsaiKVAVVGCGYAGVELAATISERLQDRGIVQSinvSKNILTSAPNGNREAAMKVLMSRKVQLLLGYL 312
Cdd:pfam07992 150 LLPK-----------RVVVVGGGYIGVELAAALAKLGKEVTLIEA---LDRLLRAFDEEISAALEKALEKNGVEVRLGTS 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  313 VKSIKRasdseEDEGYLLELQpaerglESQTIEADIVLWTVGAKPLLTKLEPSGpnvLPLNARGQAETDETLRVKgHPRI 392
Cdd:pfam07992 216 VKEIIG-----DGDGVEVILK------DGTEIDADLVVVAIGRRPNTELLEAAG---LELDERGGIVVDEYLRTS-VPGI 280

                         330       340
                  ....*....|....*....|....*...
gi 727493964  393 FALGDSsslresnGKLLPTTAQVAFQEA 420
Cdd:pfam07992 281 YAAGDC-------RVGGPELAQNAVAQG 301
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 80-503 3.65e-30

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 122.18  E-value: 3.65e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  80 KRPRVCILGGGFGGLYTALRLeslvwpDDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIKFLRD 159
Cdd:PTZ00318   9 KKPNVVVLGTGWAGAYFVRNL------DPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 160 RVKTLLP------CDHVGVNGSEsfitggtvlLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIKLNEKL 233
Cdd:PTZ00318  83 VVYDVDFeekrvkCGVVSKSNNA---------NVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRI 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 234 SK-LERKNFKDGSA------IKVAVVGCGYAGVELAATISERLQDRgivqsinvSKNILTSAPNGNR----EAAMKVLMS 302
Cdd:PTZ00318 154 VQcIERASLPTTSVeerkrlLHFVVVGGGPTGVEFAAELADFFRDD--------VRNLNPELVEECKvtvlEAGSEVLGS 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 303 RKvQLLLGYLVKSIKRASDSEEDEGYLLELQPAERGLES-QTIEADIVLWTVGAKP-LLTKLEPSGPNvlplnARGQAET 380
Cdd:PTZ00318 226 FD-QALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDgEVIPTGLVVWSTGVGPgPLTKQLKVDKT-----SRGRISV 299

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 381 DETLRVKGHPRIFALGDSSSLRESNgklLPTTAQVAFQEADFAGWNIWAAINNRPLL-PFRFQNLGEMMTLGRYDAAISp 459
Cdd:PTZ00318 300 DDHLRVKPIPNVFALGDCAANEERP---LPTLAQVASQQGVYLAKEFNNELKGKPMSkPFVYRSLGSLAYLGNYSAIVQ- 375

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 727493964 460 sfIEGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWfAKSAV 503
Cdd:PTZ00318 376 --LGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNW-AGTAI 416
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 108-402 8.00e-26

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 107.97  E-value: 8.00e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 108 DKKPQVVLVDQSERFVFKP-MLYELLSGEVDvweiapRFSDLLTNTGIKFLRDRVKTLLPCDHVGVNGSESfitggTVLL 186
Cdd:COG0446    3 GPDAEITVIEKGPHHSYQPcGLPYYVGGGIK------DPEDLLVRTPESFERKGIDVRTGTEVTAIDPEAK-----TVTL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 187 ESGFKIEYDWLVLALGAESKLDVVPGA-MELAFPFYTLEDAIKLNEKLsklerknfKDGSAIKVAVVGCGYAGVELAATi 265
Cdd:COG0446   72 RDGETLSYDKLVLATGARPRPPPIPGLdLPGVFTLRTLDDADALREAL--------KEFKGKRAVVIGGGPIGLELAEA- 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 266 serLQDRGI-VQSINVSKNILTSAPNGNREAAMKVLMSRKVQLLLGYLVKSIkrasdsEEDEGYLLELQpaerglESQTI 344
Cdd:COG0446  143 ---LRKRGLkVTLVERAPRLLGVLDPEMAALLEEELREHGVELRLGETVVAI------DGDDKVAVTLT------DGEEI 207

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 727493964 345 EADIVLWTVGAKPLLTKLEPSGpnvLPLNARGQAETDETLRVkGHPRIFALGDSSSLR 402
Cdd:COG0446  208 PADLVVVAPGVRPNTELAKDAG---LALGERGWIKVDETLQT-SDPDVYAAGDCAEVP 261
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
81-397 3.38e-18

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 86.73  E-value: 3.38e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  81 RPRVCILGGGFGGLYTALRLESLvwpdDKKPQVVLV-DQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIKF-LR 158
Cdd:COG1251    1 KMRIVIIGAGMAGVRAAEELRKL----DPDGEITVIgAEPHPPYNRPPLSKVLAGETDEEDLLLRPADFYEENGIDLrLG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 159 DRVKTLLPcdhvgvngsesfiTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGA-MELAFPFYTLEDAIKLNEKLSKLE 237
Cdd:COG1251   77 TRVTAIDR-------------AARTVTLADGETLPYDKLVLATGSRPRVPPIPGAdLPGVFTLRTLDDADALRAALAPGK 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 238 RknfkdgsaikVAVVGCGYAGVELAATiserLQDRGIvqsiNVSknILTSAPN------GNREAAM--KVLMSRKVQLLL 309
Cdd:COG1251  144 R----------VVVIGGGLIGLEAAAA----LRKRGL----EVT--VVERAPRllprqlDEEAGALlqRLLEALGVEVRL 203

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 310 GYLVKSIKRasdseEDEGYLLELQPAErglesqTIEADIVLWTVGAKPLLTKLEPSGpnvLPLNaRGqAETDETLRVkGH 389
Cdd:COG1251  204 GTGVTEIEG-----DDRVTGVRLADGE------ELPADLVVVAIGVRPNTELARAAG---LAVD-RG-IVVDDYLRT-SD 266


                 ....*...
gi 727493964 390 PRIFALGD 397
Cdd:COG1251  267 PDIYAAGD 274
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 174-439 5.73e-15

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 77.14  E-value: 5.73e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 174 GSESFITGGTVLLEsGFKIEYDWLVLALGaeSKLDVVPGAmELAF--PFYTLEDAIKLnEKLSKlerknfkdgsaiKVAV 251
Cdd:PRK06292 112 GTARFVDPNTVEVN-GERIEAKNIVIATG--SRVPPIPGV-WLILgdRLLTSDDAFEL-DKLPK------------SLAV 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 252 VGCGYAGVELAATISeRLqdrGI-VQSINVSKNILTSAPNGNREAAMKVLmSRKVQLLLGYLVKSIKRASDSEEDEgyll 330
Cdd:PRK06292 175 IGGGVIGLELGQALS-RL---GVkVTVFERGDRILPLEDPEVSKQAQKIL-SKEFKIKLGAKVTSVEKSGDEKVEE---- 245

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 331 elqpAERGLESQTIEADIVLWTVGAKPLL--TKLEPSGpnvLPLNARGQAETDETLRvKGHPRIFALGDssslreSNGKL 408
Cdd:PRK06292 246 ----LEKGGKTETIEADYVLVATGRRPNTdgLGLENTG---IELDERGRPVVDEHTQ-TSVPGIYAAGD------VNGKP 311

                        250       260       270
                 ....*....|....*....|....*....|....
gi 727493964 409 LptTAQVAFQEADFAGWNIWAAIN---NRPLLPF 439
Cdd:PRK06292 312 P--LLHEAADEGRIAAENAAGDVAggvRYHPIPS 343
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 84-427 9.66e-14

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 73.20  E-value: 9.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  84 VCILGGGFGGLYTALRLESLvwpdDKKpqVVLVdqsERFVF------------KPMLY--ELLS--------GeVDVWEI 141
Cdd:COG1249    6 LVVIGAGPGGYVAAIRAAQL----GLK--VALV---EKGRLggtclnvgcipsKALLHaaEVAHearhaaefG-ISAGAP 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 142 APRFSDLLT--NTGIKFLRDRVKTLLPCDHVGV-NGSESFITGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELaf 218
Cdd:COG1249   76 SVDWAALMArkDKVVDRLRGGVEELLKKNGVDViRGRARFVDPHTVEVTGGETLTADHIVIATGSRPRVPPIPGLDEV-- 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 219 PFYTLEDAIKLnEKLSKlerknfkdgsaiKVAVVGCGYAGVELAA---------TISERLqDRgivqsinvsknILTSAP 289
Cdd:COG1249  154 RVLTSDEALEL-EELPK------------SLVVIGGGYIGLEFAQifarlgsevTLVERG-DR-----------LLPGED 208

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 290 NGNREAAMKVLMSRKVQLLLGYLVKSIKRasdseEDEGYLLELqpaERGLESQTIEADIVLWTVGAKPLLTK--LEPSGp 367
Cdd:COG1249  209 PEISEALEKALEKEGIDILTGAKVTSVEK-----TGDGVTVTL---EDGGGEEAVEADKVLVATGRRPNTDGlgLEAAG- 279

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 368 nvLPLNARGQAETDETLRVkGHPRIFALGDssslreSNGKLLptTAQVAFQEADFAGWNI 427
Cdd:COG1249  280 --VELDERGGIKVDEYLRT-SVPGIYAIGD------VTGGPQ--LAHVASAEGRVAAENI 328
PRK09754 PRK09754
phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
 184-408 1.23e-10

phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional


Pssm-ID: 170080 [Multi-domain]  Cd Length: 396  Bit Score: 63.41  E-value: 1.23e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 184 VLLESGFKIEYDWLVLALGAESK-LDVVPGAMELAFPFYTLEDAIKLNEKLSKLERknfkdgsaikVAVVGCGYAGVELA 262
Cdd:PRK09754  91 LVLTNGESWHWDQLFIATGAAARpLPLLDALGERCFTLRHAGDAARLREVLQPERS----------VVIVGAGTIGLELA 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 263 ATISERlqdRGIVQSINVSKNIL-TSAPNGNREAAMKVLMSRKVQLLLGylvKSIKRASDSEEDEgylLELQPAErgles 341
Cdd:PRK09754 161 ASATQR---RCKVTVIELAATVMgRNAPPPVQRYLLQRHQQAGVRILLN---NAIEHVVDGEKVE---LTLQSGE----- 226

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727493964 342 qTIEADIVLWTVGAKPLLTKLEPSGpnvlpLNARGQAETDETLRVkGHPRIFALGDSSSLRESNGKL 408
Cdd:PRK09754 227 -TLQADVVIYGIGISANDQLAREAN-----LDTANGIVIDEACRT-CDPAIFAGGDVAITRLDNGAL 286
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 197-427 6.88e-09

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 57.85  E-value: 6.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 197 LVLALGAESKldVVPGamelaFPF-----YTLEDAIKLnEKLSKlerknfkdgsaiKVAVVGCGYAGVELAA-------- 263
Cdd:PRK06416 138 IILATGSRPR--ELPG-----IEIdgrviWTSDEALNL-DEVPK------------SLVVIGGGYIGVEFASayaslgae 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 264 -TISERLqdrgivqsinvsKNILtsaPNGNRE---AAMKVLMSRKVQLLLGYLVKSIKRASDSEEdegylLELqpaERGL 339
Cdd:PRK06416 198 vTIVEAL------------PRIL---PGEDKEiskLAERALKKRGIKIKTGAKAKKVEQTDDGVT-----VTL---EDGG 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 340 ESQTIEADIVLWTVGakplltklepSGPNV--LPLNA------RGQAETDETLRvKGHPRIFALGDSSslresnGKllPT 411
Cdd:PRK06416 255 KEETLEADYVLVAVG----------RRPNTenLGLEElgvktdRGFIEVDEQLR-TNVPNIYAIGDIV------GG--PM 315

                        250
                 ....*....|....*.
gi 727493964 412 TAQVAFQEADFAGWNI 427
Cdd:PRK06416 316 LAHKASAEGIIAAEAI 331
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
146-410 1.71e-05

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 47.22  E-value: 1.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 146 SDLLTNTGIKFLRDRVKTLLPcdHVGVngsESFITGGTVLLESGFKIEYDWLVLALGAESkldVVPgamelafPFYTLED 225
Cdd:PRK04965  57 DDLTRQSAGEFAEQFNLRLFP--HTWV---TDIDAEAQVVKSQGNQWQYDKLVLATGASA---FVP-------PIPGREL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 226 AIKLNEkLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISerlqdrgivqsiNVSKNILTSAPNGNREAAM-------- 297
Cdd:PRK04965 122 MLTLNS-QQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC------------RAGKAVTLVDNAASLLASLmppevssr 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 298 --KVLMSRKVQLLLGYLVKSIKRAsdseeDEGYLLELQpaerglESQTIEADIVLWTVGAKPLLTKLEPSGPNVlplnAR 375
Cdd:PRK04965 189 lqHRLTEMGVHLLLKSQLQGLEKT-----DSGIRATLD------SGRSIEVDAVIAAAGLRPNTALARRAGLAV----NR 253

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 727493964 376 GQAeTDETLRVKgHPRIFALGDSSslrESNGKLLP 410
Cdd:PRK04965 254 GIV-VDSYLQTS-APDIYALGDCA---EINGQVLP 283
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
 187-401 2.51e-05

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 46.57  E-value: 2.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 187 ESGFKIEYDWLVLALGAESkldVVPGAMELAFP-FYTL---EDAIKLNEKLSKLERKNfkdgsaikVAVVGCGYAGVELA 262
Cdd:PRK09564  97 GSIFNDTYDKLMIATGARP---IIPPIKNINLEnVYTLksmEDGLALKELLKDEEIKN--------IVIIGAGFIGLEAV 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 263 ATISERLQDrgiVQSINVSKNILTSAPNGNREAAM-KVLMSRKVQLLLGYLVKSIkrasdSEEDEGYLLELQPAErgles 341
Cdd:PRK09564 166 EAAKHLGKN---VRIIQLEDRILPDSFDKEITDVMeEELRENGVELHLNEFVKSL-----IGEDKVEGVVTDKGE----- 232

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 342 qtIEADIVLWTVGAKPLLTKLEPSGpnvLPLNARGQAETDETLRVKGhPRIFALGDSSSL 401
Cdd:PRK09564 233 --YEADVVIVATGVKPNTEFLEDTG---LKTLKNGAIIVDEYGETSI-ENIYAAGDCATI 286
PRK07846 PRK07846
mycothione reductase; Reviewed
 167-400 2.42e-04

mycothione reductase; Reviewed


Pssm-ID: 181142 [Multi-domain]  Cd Length: 451  Bit Score: 43.40  E-value: 2.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 167 CDHVGV-NGSESFITGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELafPFYTLEDAIKLNEklskLERKnfkdgs 245
Cdd:PRK07846 101 TPNIDVyRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGV--RYHTSDTIMRLPE----LPES------ 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 246 aikVAVVGCGYAGVELAATISErLQDRgiVQSINVSKNILTSAPNGNREAAMKvLMSRKVQLLLGYLVKSIKRAsdseeD 325
Cdd:PRK07846 169 ---LVIVGGGFIAAEFAHVFSA-LGVR--VTVVNRSGRLLRHLDDDISERFTE-LASKRWDVRLGRNVVGVSQD-----G 236

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727493964 326 EGYLLELQPAErglesqTIEADIVLWTVGAKPLLTKLEPSGPNVlPLNARGQAETDETLR--VKGhprIFALGDSSS 400
Cdd:PRK07846 237 SGVTLRLDDGS------TVEADVLLVATGRVPNGDLLDAAAAGV-DVDEDGRVVVDEYQRtsAEG---VFALGDVSS 303
PRK06327 PRK06327
dihydrolipoamide dehydrogenase; Validated
 248-397 4.49e-04

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235779 [Multi-domain]  Cd Length: 475  Bit Score: 42.61  E-value: 4.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 248 KVAVVGCGYAGVELAA---------TISERLQDRGIVQSINVSKniltsapngnreAAMKVLMSRKVQLLLGYLVKSIKR 318
Cdd:PRK06327 185 KLAVIGAGVIGLELGSvwrrlgaevTILEALPAFLAAADEQVAK------------EAAKAFTKQGLDIHLGVKIGEIKT 252

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 319 ASDSeedegylLELQPAERGLESQTIEADIVLWTVGAKPLLTKL--EPSGpnvLPLNARGQAETDETLRVkGHPRIFALG 396
Cdd:PRK06327 253 GGKG-------VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLglEAVG---LKLDERGFIPVDDHCRT-NVPNVYAIG 321


                 .
gi 727493964 397 D 397
Cdd:PRK06327 322 D 322
PRK13512 PRK13512
coenzyme A disulfide reductase; Provisional
 82-417 6.69e-04

coenzyme A disulfide reductase; Provisional


Pssm-ID: 184103 [Multi-domain]  Cd Length: 438  Bit Score: 42.08  E-value: 6.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964  82 PRVCILGGGFGGLYTALRLESLvwpdDKKPQVVLVDQSERFVFKPMLYELLSGEVdvweIAPRfSDLLTNTGIKFLRDRV 161
Cdd:PRK13512   2 PKIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMSFANCALPYYIGEV----VEDR-KYALAYTPEKFYDRKQ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 162 KTLLPCDHV-GVNGSESFITGGTVLLESGFKIEYDWLVLALGAESklDVVPGAMELAFPFYTLEDAIKLNEKLSKLERKn 240
Cdd:PRK13512  73 ITVKTYHEViAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA--NSLGFESDITFTLRNLEDTDAIDQFIKANQVD- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 241 fkdgsaiKVAVVGCGYAGVELAatisERLQDRGI-VQSINVSKNILTSAPNGNREAAMKVLMSRKVQLLLGYLVKSIKra 319
Cdd:PRK13512 150 -------KALVVGAGYISLEVL----ENLYERGLhPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAIN-- 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 320 sdseedeGYLLELQpaerglESQTIEADIVLWTVGAKPLLTKLEPSGpnvLPLNARGQAETDETLRVKgHPRIFALGD-- 397
Cdd:PRK13512 217 -------GNEVTFK------SGKVEHYDMIIEGVGTHPNSKFIESSN---IKLDDKGFIPVNDKFETN-VPNIYAIGDii 279

                        330       340
                 ....*....|....*....|
gi 727493964 398 SSSLRESNgklLPTTAQVAF 417
Cdd:PRK13512 280 TSHYRHVD---LPASVPLAW 296
PRK06370 PRK06370
FAD-containing oxidoreductase;
174-397 3.20e-03

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 40.19  E-value: 3.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 174 GSESFITGGTVLLeSGFKIEYDWLVLALGAESKLDVVPGAMELafPFYTLEDAIKLNEKLSKLerknfkdgsaikvAVVG 253
Cdd:PRK06370 115 GHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEV--GYLTNETIFSLDELPEHL-------------VIIG 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727493964 254 CGYAGVELAATISeRLQDRgiVQSINVSKNILtsaPNGNREAA---MKVLMSRKVQLLLGYLVKSIKRAsdseeDEGYLL 330
Cdd:PRK06370 179 GGYIGLEFAQMFR-RFGSE--VTVIERGPRLL---PREDEDVAaavREILEREGIDVRLNAECIRVERD-----GDGIAV 247

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727493964 331 ELQPAERgleSQTIEADIVLWTVGAKplltklepsgPNVLPLN---------ARGQAETDETLRVKgHPRIFALGD 397
Cdd:PRK06370 248 GLDCNGG---APEITGSHILVAVGRV----------PNTDDLGleaagvetdARGYIKVDDQLRTT-NPGIYAAGD 309
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 334-397 5.12e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 39.47  E-value: 5.12e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727493964 334 PAERGLESQTIEADIVLWTVGAKPLLTKLEpSGPNVLplNARGQAETDETLRVKGHPRIFALGD 397
Cdd:PRK12771 357 PSPVTGEEETLEADLVVLAIGQDIDSAGLE-SVPGVE--VGRGVVQVDPNFMMTGRPGVFAGGD 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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