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Conserved domains on  [gi|727210236|ref|WP_033671483|]
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MULTISPECIES: YlmC/YmxH family sporulation protein [Bacillus]

Protein Classification

YlmC/YmxH family sporulation protein( domain architecture ID 10021560)

YlmC/YmxH family sporulation protein is a PRC-barrel domain-containing protein, similar to Bacillus subtilis YmxH that is strongly induced by the mother cell-specific sigma-E factor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
spore_YlmC_YmxH TIGR02888
sporulation protein, YlmC/YmxH family; Members of this family belong to the broader family of ...
 2-76 4.69e-26

sporulation protein, YlmC/YmxH family; Members of this family belong to the broader family of PRC-barrel domain proteins (see pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor. [Cellular processes, Sporulation and germination]


:

Pssm-ID: 274339  Cd Length: 76  Bit Score: 91.20  E-value: 4.69e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727210236   2 RLSELSGKEIVDLERAEKMGVLGHADLEINEKDGEIQALIIPV-GKWGGFKREQQEVRVEWNRIKKVGHDMIIFDL 76
Cdd:TIGR02888  1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGkGKKFGLFSKGEEIEIPWDAIKKIGSDVILVDV 76
 
Name Accession Description Interval E-value
spore_YlmC_YmxH TIGR02888
sporulation protein, YlmC/YmxH family; Members of this family belong to the broader family of ...
 2-76 4.69e-26

sporulation protein, YlmC/YmxH family; Members of this family belong to the broader family of PRC-barrel domain proteins (see pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor. [Cellular processes, Sporulation and germination]


Pssm-ID: 274339  Cd Length: 76  Bit Score: 91.20  E-value: 4.69e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727210236   2 RLSELSGKEIVDLERAEKMGVLGHADLEINEKDGEIQALIIPV-GKWGGFKREQQEVRVEWNRIKKVGHDMIIFDL 76
Cdd:TIGR02888  1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGkGKKFGLFSKGEEIEIPWDAIKKIGSDVILVDV 76
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 3-73 8.11e-15

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


Pssm-ID: 441477  Cd Length: 70  Bit Score: 62.53  E-value: 8.11e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727210236  3 LSELSGKEIVDlERAEKMGVLghADLEINEKDGEIQALIIPVGK--WGGFKREQQEVRVEWNRIKKVGHDMII 73
Cdd:COG1873   1 ASELIGKEVIT-SDGERLGKV--KDVEIDLETGKIEALVVPPGNkfFGFLGDGEKEVVIPWEAVKKIGDDVIL 70
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 1-75 1.58e-06

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 41.51  E-value: 1.58e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727210236   1 MRLSELSGKEIVDlERAEKMGVLghADLEINEKDGEIQALIIPVGKWGGFKreqqEVRVEWNR-IKKVGHDMIIFD 75
Cdd:pfam05239  4 FYASDLIGLEVYT-EDGEKLGKV--KDVVIDEGEGRVRYLVVSVGGFLGGK----EVLIPFDKlNVKLGKDRIIVD 72
 
Name Accession Description Interval E-value
spore_YlmC_YmxH TIGR02888
sporulation protein, YlmC/YmxH family; Members of this family belong to the broader family of ...
 2-76 4.69e-26

sporulation protein, YlmC/YmxH family; Members of this family belong to the broader family of PRC-barrel domain proteins (see pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor. [Cellular processes, Sporulation and germination]


Pssm-ID: 274339  Cd Length: 76  Bit Score: 91.20  E-value: 4.69e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727210236   2 RLSELSGKEIVDLERAEKMGVLGHADLEINEKDGEIQALIIPV-GKWGGFKREQQEVRVEWNRIKKVGHDMIIFDL 76
Cdd:TIGR02888  1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGkGKKFGLFSKGEEIEIPWDAIKKIGSDVILVDV 76
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 3-73 8.11e-15

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


Pssm-ID: 441477  Cd Length: 70  Bit Score: 62.53  E-value: 8.11e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727210236  3 LSELSGKEIVDlERAEKMGVLghADLEINEKDGEIQALIIPVGK--WGGFKREQQEVRVEWNRIKKVGHDMII 73
Cdd:COG1873   1 ASELIGKEVIT-SDGERLGKV--KDVEIDLETGKIEALVVPPGNkfFGFLGDGEKEVVIPWEAVKKIGDDVIL 70
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 1-75 1.58e-06

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 41.51  E-value: 1.58e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727210236   1 MRLSELSGKEIVDlERAEKMGVLghADLEINEKDGEIQALIIPVGKWGGFKreqqEVRVEWNR-IKKVGHDMIIFD 75
Cdd:pfam05239  4 FYASDLIGLEVYT-EDGEKLGKV--KDVVIDEGEGRVRYLVVSVGGFLGGK----EVLIPFDKlNVKLGKDRIIVD 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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