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Conserved domains on  [gi|727194443|ref|WP_033656121|]
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IS3 family transposase [Streptococcus pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS3 super family cl41295
IS3 family transposase;
1-56 7.64e-22

IS3 family transposase;


The actual alignment was detected with superfamily member NF033516:

Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 85.31  E-value: 7.64e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 727194443   1 MMESFFGILKSEMFYGYekTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYR 56
Cdd:NF033516 316 VAESFFGTLKRECLYRR--RFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
1-56 7.64e-22

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 85.31  E-value: 7.64e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 727194443   1 MMESFFGILKSEMFYGYekTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYR 56
Cdd:NF033516 316 VAESFFGTLKRECLYRR--RFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-59 1.53e-21

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 84.05  E-value: 1.53e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 727194443   1 MMESFFGILKSEMFYGYEktFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYRTKS 59
Cdd:COG2801  249 FIESFFGTLKYELLYRRR--FESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQL 305
rve_2 pfam13333
Integrase core domain;
3-60 1.62e-19

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 73.06  E-value: 1.62e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 727194443   3 ESFFGILKSEMFYGYekTFKSLNQLEQAIIDYIDYYNNKRikvkLKGLSPVQYRTKSF 60
Cdd:pfam13333  1 ESFFGSLKTEMVYGE--HFKTLEELELAIFDYIEWYNNKR----LKGLSPVQYRNQSL 52
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 1-54 2.41e-10

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 53.33  E-value: 2.41e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 727194443   1 MMESFFGILKSEMFYgyEKTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQ 54
Cdd:PHA02517 210 PAESINGLYKAEVIH--RVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
1-56 7.64e-22

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 85.31  E-value: 7.64e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 727194443   1 MMESFFGILKSEMFYGYekTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYR 56
Cdd:NF033516 316 VAESFFGTLKRECLYRR--RFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-59 1.53e-21

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 84.05  E-value: 1.53e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 727194443   1 MMESFFGILKSEMFYGYEktFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYRTKS 59
Cdd:COG2801  249 FIESFFGTLKYELLYRRR--FESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQL 305
rve_2 pfam13333
Integrase core domain;
3-60 1.62e-19

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 73.06  E-value: 1.62e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 727194443   3 ESFFGILKSEMFYGYekTFKSLNQLEQAIIDYIDYYNNKRikvkLKGLSPVQYRTKSF 60
Cdd:pfam13333  1 ESFFGSLKTEMVYGE--HFKTLEELELAIFDYIEWYNNKR----LKGLSPVQYRNQSL 52
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 1-54 2.41e-10

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 53.33  E-value: 2.41e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 727194443   1 MMESFFGILKSEMFYgyEKTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQ 54
Cdd:PHA02517 210 PAESINGLYKAEVIH--RVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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