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Conserved domains on  [gi|726972251|ref|YP_009110100|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Trichinella zimbabwensis]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 14-346 2.71e-52

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00150:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 417  Bit Score: 180.04  E-value: 2.71e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  14 FGFLWWVLVGVFGSVSMLIGCSDNLSYLMVGLSFMLGVVFLVC------VVVYMVGFGGLVFVYSVVLGLFFLSDNVMMF 87
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLAsqksvkLRNKSSSFSLLVLLLCLILVLAFSVSSLLMF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  88 YVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMD--SSVMG----WTSLVWVNGVVVVVMML 161
Cdd:MTH00150  81 YFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSygSSFMLlissLRKLLSSMGLWGLLVFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 162 PFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLsigldcaYNLVSLLLFLSLLS---------AV 232
Cdd:MTH00150 161 AFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMV-------FSLSSSSFSIFLISlslwggvltSL 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 233 VTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPV 312
Cdd:MTH00150 234 ICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPS 313

                        330       340       350
                 ....*....|....*....|....*....|....
gi 726972251 313 VWFFLAFLLFMSSSVPPSIGMVGEISYVVCCISV 346
Cdd:MTH00150 314 LSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISY 347
 
Name Accession Description Interval E-value
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 14-346 2.71e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 180.04  E-value: 2.71e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  14 FGFLWWVLVGVFGSVSMLIGCSDNLSYLMVGLSFMLGVVFLVC------VVVYMVGFGGLVFVYSVVLGLFFLSDNVMMF 87
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLAsqksvkLRNKSSSFSLLVLLLCLILVLAFSVSSLLMF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  88 YVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMD--SSVMG----WTSLVWVNGVVVVVMML 161
Cdd:MTH00150  81 YFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSygSSFMLlissLRKLLSSMGLWGLLVFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 162 PFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLsigldcaYNLVSLLLFLSLLS---------AV 232
Cdd:MTH00150 161 AFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMV-------FSLSSSSFSIFLISlslwggvltSL 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 233 VTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPV 312
Cdd:MTH00150 234 ICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPS 313

                        330       340       350
                 ....*....|....*....|....*....|....
gi 726972251 313 VWFFLAFLLFMSSSVPPSIGMVGEISYVVCCISV 346
Cdd:MTH00150 314 LSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISY 347
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 64-337 5.82e-36

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 137.52  E-value: 5.82e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  64 FGGLVFVYSVVLGlFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNqPERLMAANYLMMYTLMFSFPLLVLII--RFLMDSS 141
Cdd:COG1008  114 YALLLLLEAGMIG-VFLALDLFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILalYFLAGAL 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 142 VMGWTSL------VWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVgglSIGL-- 213
Cdd:COG1008  192 TFDIAELaaaplpLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF---ALPLfp 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 214 ----DCAYNLVSLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMtmilGLVVLGFGMLD----SAVVCLMLSHGVLSNSMF 285
Cdd:COG1008  269 easaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHM----GFVLLGIFALNplglQGAVLQMVSHGLITAALF 344

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 726972251 286 FMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:COG1008  345 LLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEF 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 67-337 1.05e-30

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 122.74  E-value: 1.05e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251   67 LVFVYSVVLGLFfLSDNVMMFYVLFEVSIVPIYFIVLGWGNqPERLMAANYLMMYTLMFSFPLLVLIIRFLMDS----SV 142
Cdd:TIGR01972 112 LLLLEAGVIGVF-LALDLFLFYVFWEAMLIPMYLLIGVWGG-PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGggtfDL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  143 MGWTSLVWVNGVVVVVM---MLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLvkvggLSIGLDCAYNL 219
Cdd:TIGR01972 190 LELLNLPLPFGVQTWLFlafFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGF-----LRFNLPLFPDA 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  220 VSLLLFLSLLSAVVTVV--------QNDLKKFVAYSSVTHMtmilGLVVLG-FGMLDSAV---VCLMLSHGVLSNSMFFM 287
Cdd:TIGR01972 265 SLYFAPVLAALGVIAIIygalialaQTDIKRLIAYSSISHM----GFVLLGiFSFNELGIsgaVFQMISHGLITAALFLL 340

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 726972251  288 VGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:TIGR01972 341 VGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 81-337 2.08e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 2.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251   81 SDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMGWTSLVWVNGVVV---- 156
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  157 -----VVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGL--SIGLDCAYNLVSLLLFLSLL 229
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  230 SAVVTVVQNDLKKFVAYSSVTHMT-MILGLVVLGFGMLDSAVVcLMLSHGVLSNSMFFMVG-MLSNSSKTRLLFKQQGLL 307
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGyMLIALGAGTIYGIQAAIF-HLLTHGLFSAGLFLCAGsVIYRRVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|
gi 726972251  308 QLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKF 269
 
Name Accession Description Interval E-value
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 14-346 2.71e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 180.04  E-value: 2.71e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  14 FGFLWWVLVGVFGSVSMLIGCSDNLSYLMVGLSFMLGVVFLVC------VVVYMVGFGGLVFVYSVVLGLFFLSDNVMMF 87
Cdd:MTH00150   1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLAsqksvkLRNKSSSFSLLVLLLCLILVLAFSVSSLLMF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  88 YVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMD--SSVMG----WTSLVWVNGVVVVVMML 161
Cdd:MTH00150  81 YFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSygSSFMLlissLRKLLSSMGLWGLLVFL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 162 PFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLsigldcaYNLVSLLLFLSLLS---------AV 232
Cdd:MTH00150 161 AFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMV-------FSLSSSSFSIFLISlslwggvltSL 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 233 VTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPV 312
Cdd:MTH00150 234 ICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPS 313

                        330       340       350
                 ....*....|....*....|....*....|....
gi 726972251 313 VWFFLAFLLFMSSSVPPSIGMVGEISYVVCCISV 346
Cdd:MTH00150 314 LSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISY 347
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-338 1.97e-51

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 178.42  E-value: 1.97e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251   1 MMSNFGSIMVFVVFGFLWWvLVGVFGSVSMLIGCsDNLSYLMVGLSF------MLGVVFLVCVVVYMVGFGGLVFVYSVV 74
Cdd:MTH00163  22 WLVQSLLFLLSFLFMLLFS-LSFYFSNISYFFGL-DLLSFGLILLSFwicmlmILSSESVYKKNNYSNLFLFLILFLLIF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  75 LGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMG---WTSLVWV 151
Cdd:MTH00163 100 LLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSfflLNFFGSL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 152 NGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAYNLVSLLLFLS--LL 229
Cdd:MTH00163 180 NFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVggVI 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 230 SAVVTVVQNDLKKFVAYSSVTHMTMIL-GLVVLGFGMLDSAVVcLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQ 308
Cdd:MTH00163 260 VSLICLRQVDLKSLIAYSSVAHMGLVLgGLMTFSYWGLMGSLL-MMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLN 338

                        330       340       350
                 ....*....|....*....|....*....|
gi 726972251 309 LSPVVWFFLAFLLFMSSSVPPSIGMVGEIS 338
Cdd:MTH00163 339 FMPSMSLWWFLLSSSNMAAPPSLNLLGEIS 368
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-337 2.13e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 162.42  E-value: 2.13e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251   1 MMSNFGSIMVFVVFGFLWWVLV--GVFGSVSMLIGCSDNLSYLMVGLSFMLGVVFLVCVVVYMVG--------FGGLVFV 70
Cdd:MTH00206  21 LWRSTTFFSFLIALLFLLWFKWssEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKNepinrqriYITLLIV 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  71 YSVVLGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIR------FLMDSSVMG 144
Cdd:MTH00206 101 LQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFlqnslgSLSLYILYF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 145 WTSLVWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGL--DCAYNLVSL 222
Cdd:MTH00206 181 SKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPStkLSSYFFIIL 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 223 LLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFK 302
Cdd:MTH00206 261 GLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILG 340

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 726972251 303 QQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:MTH00206 341 NRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGEL 375
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 35-349 1.57e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 157.45  E-value: 1.57e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  35 SDNLSYLMVGLSFMLGVVFLVCVVVYMVG------FGGLVFVYSVVLGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQ 108
Cdd:MTH00205  55 FDSLSLPLIMLSFWISLLMVLASYKVFKSnknsklFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQ 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 109 PERLMAANYLMMYTLMFSFPLLVLIIRF---LMDSSVMGWTSL---VWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVE 182
Cdd:MTH00205 135 PERLQASMYMMMYTLCASLPLLIGLFFLnslNFSLSMFFNFPLnfsDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVE 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 183 APVLGSMILASILLKTGGYGLVKVGglSIGLDCAYNLVSLLLFLSLLSAVVT----VVQNDLKKFVAYSSVTHMTMILGL 258
Cdd:MTH00205 215 APVSGSMILAGVLLKLGGYGLIRIT--SMLYKLNSNFSELFFSISLWGGVMTgmicLRQVDLKSLIAYSSVGHMGLMVVG 292

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 259 VVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEIS 338
Cdd:MTH00205 293 VFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEIL 372

                        330
                 ....*....|.
gi 726972251 339 YVVCCISVCSI 349
Cdd:MTH00205 373 LIMSLLSSSKI 383
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 64-338 3.67e-43

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 156.82  E-value: 3.67e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  64 FGGLVFVYSVVLGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVM 143
Cdd:MTH00014  92 FMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNNSL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 144 G------WTSLVWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVggLSIGLDCAY 217
Cdd:MTH00014 172 SmlmssmEPPSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM--SSLFMHINK 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 218 NLVSLLLFLSLLSAVVT----VVQNDLKKFVAYSSVTHMtmilGLVVLGFGMLDS----AVVCLMLSHGVLSNSMFFMVG 289
Cdd:MTH00014 250 SLSAPFSSISLVGAVITslicIRQPDLKSLIAYSSVGHM----GLMTAGIMSNTSwgwqGALAMMIAHGLCSSALFALAN 325

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 726972251 290 MLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEIS 338
Cdd:MTH00014 326 MTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIM 374
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 77-338 6.80e-42

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 153.43  E-value: 6.80e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  77 LFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIirfLMDSSVMGWTSLVWVNGVVV 156
Cdd:MTH00124 108 LAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLIAI---LYLHNQTGTLSLPMLQLTHP 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 157 VVM------------MLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVgglSIGLDCAYNLVSLLL 224
Cdd:MTH00124 185 TLTnswtnlllwlacLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRI---TLLLPPLSNTLHYPF 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 225 FLSLL-SAVVTVV----QNDLKKFVAYSSVTHMtmilGLVV--------LGFgmldSAVVCLMLSHGVLSNSMFFMVGML 291
Cdd:MTH00124 262 LTLALwGALMTSLiclrQTDLKSLIAYSSVSHM----GLVIaatmiqtpWSL----SGAMILMIAHGLTSSMLFCLANTN 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 726972251 292 SNSSKTRLLFKQQGLLQLSPV--VWFFLAFLLFMssSVPPSIGMVGEIS 338
Cdd:MTH00124 334 YERTHSRTLLLTRGLQLLLPLmtTWWLLANLTNM--ALPPTINLMGELT 380
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 77-341 8.98e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 150.45  E-value: 8.98e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  77 LFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFlmdSSVMGWTSLVWVNGVVV 156
Cdd:MTH00068 108 LAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLIL---QNSLGSLSLILLELMSP 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 157 VVMM------------LPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGL--SIGLDCAYNLVSL 222
Cdd:MTH00068 185 MQLMtytnkiwwlaclLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILltPLSKELSYPFIIL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 223 LLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFK 302
Cdd:MTH00068 265 ALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLL 344

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 726972251 303 QQGLLQLSPVV--WFFLAFLLFMssSVPPSIGMVGEISYVV 341
Cdd:MTH00068 345 LRGAQTILPLMatWWLLSNLSNM--ALPPSPNLWGELTIMV 383
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 67-337 2.11e-38

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 143.96  E-value: 2.11e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  67 LVFVYSVVLGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLV--LIIRFLMDSSVMG 144
Cdd:MTH00044  99 LIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLIslIAIYSSSSSLSIP 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 145 WTSLVWVNGVVVVVM-------MLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLsIGLDCAY 217
Cdd:MTH00044 179 LSELNWLTSLSSNSSsiwwifcILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINL-FSLPSAN 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 218 NLVSLLLFLSLLSAVVT----VVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSN 293
Cdd:MTH00044 258 NISFILIVFCCWGALITsiicLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYE 337

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 726972251 294 SSKTRLLFKQQG---LLQLSPVVWfflaflLFMSSS---VPPSIGMVGEI 337
Cdd:MTH00044 338 RSGTRTLSITRGfklITPLLPLWW------LIFCAAnlgLPPLPNLIGEL 381
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 64-337 5.82e-36

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 137.52  E-value: 5.82e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  64 FGGLVFVYSVVLGlFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNqPERLMAANYLMMYTLMFSFPLLVLII--RFLMDSS 141
Cdd:COG1008  114 YALLLLLEAGMIG-VFLALDLFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILalYFLAGAL 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 142 VMGWTSL------VWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVgglSIGL-- 213
Cdd:COG1008  192 TFDIAELaaaplpLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF---ALPLfp 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 214 ----DCAYNLVSLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMtmilGLVVLGFGMLD----SAVVCLMLSHGVLSNSMF 285
Cdd:COG1008  269 easaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHM----GFVLLGIFALNplglQGAVLQMVSHGLITAALF 344

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 726972251 286 FMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:COG1008  345 LLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEF 396
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 77-376 3.82e-35

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 133.88  E-value: 3.82e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  77 LFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMgwTSLVWVNGVVV 156
Cdd:MTH00094  77 LFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLC--YFDFFLSWEMF 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 157 VVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGlSIGLDCAYNLVSLLLFLSLLSAVVTVV 236
Cdd:MTH00094 155 FILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILG-SLNFVYNNFWIIFSLLGMILSSFCCVF 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 237 QNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFF 316
Cdd:MTH00094 234 QSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLI 313

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 317 LAFLLFMSSSVPPSIGMVGEISYVVCCISVCSINLVLLILLFVALLYYPLWFLCMLTANK 376
Cdd:MTH00094 314 FSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGK 373
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 79-341 1.45e-34

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 133.09  E-value: 1.45e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  79 FLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLV--------------LIIRFLMDSSVMG 144
Cdd:MTH00110 110 FTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVallyiqnnlgslnfLLLQLWAQPLPNS 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 145 WTSlvwvnGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKvggLSIGLD-----CAYNL 219
Cdd:MTH00110 190 WSN-----NLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMR---ITIILNpltefMAYPF 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 220 VSLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGvLSNSMFFmvgMLSNS----- 294
Cdd:MTH00110 262 LMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG-LTSSMLF---CLANSnyeri 337

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 726972251 295 -SKTRLLfkQQGLLQLSPVV--WFFLAFLLFMssSVPPSIGMVGEISYVV 341
Cdd:MTH00110 338 hSRTMIL--ARGLQTLLPLMatWWLLASLTNL--ALPPTINLIGELFVIM 383
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 64-338 3.65e-33

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 129.94  E-value: 3.65e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  64 FGGLVFVYSVVLGLFfLSDNVMMFYVLFEVSIVPIYFIVLGWGnQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVM 143
Cdd:PRK05846 114 MAALLWLEGGVIGVF-AALDLLLFYVFFEAMLIPMYFLIGVWG-GKNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 144 G-------WTSLVWVNGVVVVVM---MLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVkvgGLSIGL 213
Cdd:PRK05846 192 TgtfdiadLLNLPLPPGVQYWLFlafFIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLL---RFSLPL 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 214 ------DCAYNLVSLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMtmilGLVVLGFGMLDSA----VVCLMLSHGVLSNS 283
Cdd:PRK05846 269 fpdashEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHM----GFVTLGIFAGNQLgiqgAIFQMISHGLSSAA 344

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 726972251 284 MFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEIS 338
Cdd:PRK05846 345 LFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFL 399
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 75-337 1.11e-32

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 128.15  E-value: 1.11e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  75 LGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIirfLMDSSVMGWTSLVWVNGV 154
Cdd:MTH00127 107 LILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVAL---LLLQNSTGTLSMLTLQYS 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 155 VVVVM------------MLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGL--DCAYNLV 220
Cdd:MTH00127 184 QPLQLsswadklwwagcLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLtkELSYPFI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 221 SLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLL 300
Cdd:MTH00127 264 ILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTM 343

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 726972251 301 FKQQGLLQLSPV--VWFFLAFLLFMssSVPPSIGMVGEI 337
Cdd:MTH00127 344 LLARGLQMILPLmaTWWFIASLANL--ALPPLPNLMGEL 380
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 67-337 1.05e-30

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 122.74  E-value: 1.05e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251   67 LVFVYSVVLGLFfLSDNVMMFYVLFEVSIVPIYFIVLGWGNqPERLMAANYLMMYTLMFSFPLLVLIIRFLMDS----SV 142
Cdd:TIGR01972 112 LLLLEAGVIGVF-LALDLFLFYVFWEAMLIPMYLLIGVWGG-PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGggtfDL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  143 MGWTSLVWVNGVVVVVM---MLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLvkvggLSIGLDCAYNL 219
Cdd:TIGR01972 190 LELLNLPLPFGVQTWLFlafFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGF-----LRFNLPLFPDA 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  220 VSLLLFLSLLSAVVTVV--------QNDLKKFVAYSSVTHMtmilGLVVLG-FGMLDSAV---VCLMLSHGVLSNSMFFM 287
Cdd:TIGR01972 265 SLYFAPVLAALGVIAIIygalialaQTDIKRLIAYSSISHM----GFVLLGiFSFNELGIsgaVFQMISHGLITAALFLL 340

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 726972251  288 VGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:TIGR01972 341 VGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 67-336 2.26e-29

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 119.00  E-value: 2.26e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  67 LVFVYSVVLGLFFLSDnVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMGWT 146
Cdd:MTH00217 115 LLVIEILLMGVFTILD-LVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQ 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 147 SLVWVNG------VVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKV--GGLSIGLD-CAY 217
Cdd:MTH00217 194 ALCCLKIekelqyFIFLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFswPLLPEASEyFSP 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 218 NLVSLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMtmilGLVVLGFGMLDS----AVVCLMLSHGVLSNSMFFMVGMLSN 293
Cdd:MTH00217 274 LIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHM----GLVTLGIFSHTIqglvAAIFLMLAHGLVSSALFIAVTFLYE 349

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 726972251 294 SSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGE 336
Cdd:MTH00217 350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGE 392
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 83-336 2.90e-28

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 116.17  E-value: 2.90e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  83 NVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMGWTSLVWVNGVVVVVM--- 159
Cdd:MTH00226 152 DIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVVSEQTqkw 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 160 -----MLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGL---DCAYNLVSLLLFLSLLSA 231
Cdd:MTH00226 232 iflgiFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgaqNLAPAVIAMGIVGIVYGS 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 232 VVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSP 311
Cdd:MTH00226 312 FATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMP 391

                        250       260
                 ....*....|....*....|....*
gi 726972251 312 VVWFFLAFLLFMSSSVPPSIGMVGE 336
Cdd:MTH00226 392 IWGTIMIVTSLANVAVPPSGNFIGE 416
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 64-338 1.28e-25

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 108.58  E-value: 1.28e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  64 FGGLVFVYSVVLGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQpERLMAANYLMMYTLMFSFPLLV--LIIRFLMDSS 141
Cdd:PRK12561  89 FYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQ-KRLYAATKFILYTALASIFILVagLALALSGDTF 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 142 VMGWTSLVWVNGVVVVVMML------PFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVK--VGGLSigl 213
Cdd:PRK12561 168 TFDLAELGAKSYPLALELLLyagfliAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRfnVQMLP--- 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 214 dcayNLVSLLLFLSLLSAVVTVV--------QNDLKKFVAYSSVTHMtmilGLVVLGFGMLD----SAVVCLMLSHGVLS 281
Cdd:PRK12561 245 ----DAHVYFAPALAILGVVNIIygalnafaQDNVKRRLAYSSVSHM----GFVLLGIAAFTdlgiSGAMLQMISHGLIA 316

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 726972251 282 NSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVwfflaFLLFMSSS-----VPPSIGMVGEIS 338
Cdd:PRK12561 317 AALFFLTGVTYERTHTLSIPNMGGLAKVMPKT-----FALFTASSmaslaLPGMSGFVSELT 373
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 81-337 2.08e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 2.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251   81 SDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMGWTSLVWVNGVVV---- 156
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  157 -----VVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGL--SIGLDCAYNLVSLLLFLSLL 229
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  230 SAVVTVVQNDLKKFVAYSSVTHMT-MILGLVVLGFGMLDSAVVcLMLSHGVLSNSMFFMVG-MLSNSSKTRLLFKQQGLL 307
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGyMLIALGAGTIYGIQAAIF-HLLTHGLFSAGLFLCAGsVIYRRVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|
gi 726972251  308 QLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKF 269
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 79-336 4.47e-24

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 103.60  E-value: 4.47e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  79 FLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMGWTSLVWVNGVV--- 155
Cdd:MTH00204 129 FSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIKLPLsiq 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 156 ---VVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSigLDCAYNLVSLLLFLSLLSAV 232
Cdd:MTH00204 209 kwlLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPL--FPAASEYFAPLIVMLSVIAV 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 233 V-----TVVQNDLKKFVAYSSVTHMtmilGLVVLGF------GMLdsAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLF 301
Cdd:MTH00204 287 IygsltTCRQVDFKRLIAYSSVAHM----GLVPLGLfthtieGLV--AAVFLMLAHGFVSSALFIAVTFLYERHHTRLIK 360

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 726972251 302 KQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGE 336
Cdd:MTH00204 361 YYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGE 395
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
69-338 2.79e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 101.70  E-value: 2.79e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  69 FVYSVVLGL------FFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQpERLMAANYLMMYTLMFSFPLLV--LIIRFLMDS 140
Cdd:PRK06473 108 FYYSLLLLLnagvsgAFLAQDLLLFFLFYELELIPLYLLIAIWGGQ-RRGYAATKFLLYTAISGILILVsfLGLVWLSGA 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 141 SVMGWTSLVWVNGVVVVVMML------PFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGglsIGL- 213
Cdd:PRK06473 187 SSFDYEPLRSHTLPLSTQLLLlapilvGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFG---VGLf 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 214 -----DCAYNLVSLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMV 288
Cdd:PRK06473 264 peawvYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLV 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 726972251 289 GMLSNSSKTRLLFKQQGLL---QLSPVVWFFLAFLLFMSSSVPpsiGMVGEIS 338
Cdd:PRK06473 344 GVVYKKTGSRDVDVLRGLLnpeRGLPITGSLMILGVMASAGIP---GMVGFIA 393
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 79-337 2.12e-18

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 87.07  E-value: 2.12e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  79 FLSDNVMMFYVLFEVSIVPIYFIVLGWGNQpERLMAANYLMMYTLMFSFPLLV--LIIRFLMDSSVMGWTSL------VW 150
Cdd:PRK02546 132 FAVQDMLLFFLAWELELIPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILLaaLAMAFYGDTPTFDMTALaakdfgLG 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 151 VNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAY---NLVSLLLFLS 227
Cdd:PRK02546 211 FQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQfapLLIVLGVVNI 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 228 LLSAVVTVVQNDLKKFVAYSSVTHMtmilGLVVLGFGMLD----SAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQ 303
Cdd:PRK02546 291 IYAALTSFAQRNLKRKIAYSSISHM----GFVLIGIGSFTdlgtSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEM 366

                        250       260       270
                 ....*....|....*....|....*....|....
gi 726972251 304 QGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEI 337
Cdd:PRK02546 367 GGVGQKMRKMFAMWTACSLASLALPGMSGFVAEL 400
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 36-337 6.30e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.12  E-value: 6.30e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  36 DNLSYLMVGLSFMLGVVFLVCVVVYMVGFGGLVFVYSVVLGLF------FLSDNVMMFYVLFEVSIVPIYFIVLgWGNQP 109
Cdd:COG0651   75 DRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLagmngaFLTGDLFNLFVFFEVMLLASYGLVA-LGGTK 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 110 ERLMAA-NYLMMYTLMFSFPLLVLIIRFLM-------DSSVMGWTSLVWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHV 181
Cdd:COG0651  154 EALRAGlKYLILNLVGSALFLLGVGLLYGAtgtlnmaDLAARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYP 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 182 EAPVLGSMILASILLKTGGYGLVKVGGLSIGLDcaynLVSLLLFLSLLSAVVTVV--------QNDLKKFVAYSSVTHMt 253
Cdd:COG0651  234 AAPSPVSALLSGLLTKVGVYAILRVLTLLFGAD----PALFLGTLLLVLGLLTMLvgalgalaQRDLKRLLAYSSVSQI- 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 254 milGLVVLGFGMLD----SAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPP 329
Cdd:COG0651  309 ---GYILLGLGLGTplglAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPP 385


                 ....*...
gi 726972251 330 SIGMVGEI 337
Cdd:COG0651  386 LSGFVSKW 393
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
79-307 6.07e-16

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 79.37  E-value: 6.07e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  79 FLSDNVMMFYVLFEVSIVPIYFIVLGWGNQpERLMAANYLMMYTLMFSFPLLV--LIIRFLMDSSVMGWTSL------VW 150
Cdd:PRK07363 124 LLAQNLLLFFLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAafLGIVWLSGSTSFDYDAIstqnlsLN 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 151 VNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGglsIGL------DCAYNLVSLLL 224
Cdd:PRK07363 203 TQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG---LQLfpqtwsLVAPGLAIIGT 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 225 FLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQ 304
Cdd:PRK07363 280 ISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLN 359


                 ...
gi 726972251 305 GLL 307
Cdd:PRK07363 360 GLM 362
ndhD CHL00011
NADH dehydrogenase subunit 4
 71-301 7.45e-15

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 76.14  E-value: 7.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  71 YSVVLGLFfLSDNVMMFYVLFEVSIVPIYFIVLGWGNQpERLMAANYLMMYTLMFSFPLL--VLIIRFLM-DSSVMGWTS 147
Cdd:CHL00011 122 YSGQIGLF-SSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLigVLGMGLYGsNEPTLNFET 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 148 LVWVNGVVVVVMML------PFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKvgglsIGLDCAYNLVS 221
Cdd:CHL00011 200 LANQSYPVALEILFyigfliAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIR-----INMELLPHAHS 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 222 LLLFLSLLSAVVTVV--------QNDLKKFVAYSSVTHMtmilGLVVLGFGMLD----SAVVCLMLSHGVLSNSMFFMVG 289
Cdd:CHL00011 275 IFSPWLVIVGAIQIIyaastslgQRNLKKRIAYSSVSHM----GFIIIGIGSITdtglNGAILQIISHGFIGAALFFLAG 350

                        250
                 ....*....|..
gi 726972251 290 mlSNSSKTRLLF 301
Cdd:CHL00011 351 --TSYDRIRLVY 360
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 36-332 7.13e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 70.00  E-value: 7.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  36 DNLSYLMVGLSFMLGVVFLVCVVVYMVGFGGLVFVYSVVLGLF------FLSDNVMMFYVLFEVSIVPIYFIVLGWGNQP 109
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEagmlgiLLTGDAFNLFVMLEVLSISAYGLVAYYRDRG 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 110 ERLMAA-NYLMM----YTLMF-------------SFPLLVLIIRFLMDSSVMGWT-SLVWVNGVVVVVMMLPFIIKLPVY 170
Cdd:PRK12667 161 DAVEAAiKYALIgavgTTLYFlalaflyatfgtlNMADLSAKIRGLSFPLTGGLAgNPPLALGVALALALWAFTIKAAIF 240

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 171 LFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKV-----GGLSIGLDCAYNLVSLLLFLSLLSAVVT----VVQNDLK 241
Cdd:PRK12667 241 PNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifGISPSLIDFRAALSPILIILGAVSAIIGalmmVVQKDVK 320

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 242 KFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLL 321
Cdd:PRK12667 321 RLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGA 400

                        330
                 ....*....|.
gi 726972251 322 FMSSSVPPSIG 332
Cdd:PRK12667 401 LSLVGIPPLNG 411
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 2-346 2.70e-12

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 68.03  E-value: 2.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251   2 MSNFGSIMVFVVFGFLWWVLVGVFGSVSMLIG----CSDNLSYLMVGLSFMLGVVFLVCVVVYMVGFGGLVFVYSVVLGL 77
Cdd:MTH00062   6 VGFFLGFLLLLLFCLLYSSGVGCCILVVNNVFnglfIFDSLSFYLILLVLFLGLYSQVMFYNLLSGVSRFFLFLSLIFSI 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  78 F-FLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDS---SVMGWTSLVWVNG 153
Cdd:MTH00062  86 LcFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNgsfNFSDWGSDDSVSL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 154 VVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGlDCAYNLVSLLLFLSLLSAVV 233
Cdd:MTH00062 166 IVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFS-GSFLGYLFLCCLFSVFFLIT 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 234 TVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVV 313
Cdd:MTH00062 245 ACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVL 324

                        330       340       350
                 ....*....|....*....|....*....|...
gi 726972251 314 WFFLAFLLFMSSSVPPSIGMVGEISYVVCCISV 346
Cdd:MTH00062 325 RVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGV 357
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 173-321 6.55e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 54.55  E-value: 6.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 173 HLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGL---SIGLDCAYNLVSLLLFLSLLSAVVTV-VQNDLKKFVAYSS 248
Cdd:PRK06458 234 HAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILidaAIGSDFPGRLLLIFGLLSVLVAAFFLlRQRDIKRLFAYSS 313

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 726972251 249 VTHMtmilGLVVLGFGMLDS----AVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVV-WFFLAFLL 321
Cdd:PRK06458 314 IEHM----GLIAFALGIGGPlgifAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTgWGLMLGAL 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 79-335 3.89e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.80  E-value: 3.89e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  79 FLSDNVMMFYVLFEVSIVPIYFIVlGWGNQPERLMAA-NYLMMYTLMFSFPLLVLIIRFLMDSSV-----MGWTSLVWVN 152
Cdd:PRK08375 123 LLTADLFNLFVFLEIMSLSSYALV-AMGGDRRALAAArKYLIVGLIGSTFLLIGVGLLYGVTGTLnmadlAGALAENPTV 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 153 GVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAYNLVSLLLFLSLLSA- 231
Cdd:PRK08375 202 VTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLALLs 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 232 -----VVTVVQNDLKKFVAYSSVTHMT-MILGLVVLGFGMLDSAVVcLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQG 305
Cdd:PRK08375 282 mlvgsLAALGQDDVKRVLAYSTVSQMGyILLGLALLTPLALAAGLL-HLLHHALMKGALFLAAGAIEVTYGTRRLSELSG 360

                        250       260       270
                 ....*....|....*....|....*....|
gi 726972251 306 LLQLSPVVWFFLAFLLFMSSSVPPSIGMVG 335
Cdd:PRK08375 361 LGRRMPLTAAAFAVASLSLIGVPPTSGFVS 390
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 69-338 5.58e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 51.36  E-value: 5.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  69 FVYSVVLGLFF-LSDNVMMFYVLFEVSIVPIYFIVlGWGNQPERLMAANY----LMMYTLMFSFPLLVLIIRFLMDSSVM 143
Cdd:PRK06589 122 FNLTILIGVLIaLSSDLFTMFVCYELLTISTAFLI-GHTRNNISLSGGYKylkiLMISALLLFLPAVILIYTKTGNLDFV 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 144 GWTSLVWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAYNLV--- 220
Cdd:PRK06589 201 SGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFaef 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 221 ----SLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSK 296
Cdd:PRK06589 281 nwliFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKK 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 726972251 297 TRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPSIGMVGEIS 338
Cdd:PRK06589 361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFL 402
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 73-291 7.88e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.91  E-value: 7.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  73 VVLGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMG-----WTS 147
Cdd:PRK08676 113 SVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAMIFAFIGLIFLFSLTRQALGtgtlnWTE 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 148 LVW--------VNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGL----SIGLDC 215
Cdd:PRK08676 193 LAAhasllspsVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALlrqsGAAEQF 272

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 726972251 216 AYNLVSLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGML 291
Cdd:PRK08676 273 SNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGIL 348
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 68-337 1.24e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.42  E-value: 1.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  68 VFVYSVVLglFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAA-NYLMMYTLMFSFPLLVLIIRFLMDSS----V 142
Cdd:PRK08667 119 LFILSMLG--VVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGiFYFVMTQLSTVFLMLGIIVLFIQTGSfelsP 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 143 MGWTSlvWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVK--VGGLSIGLDCAYNLV 220
Cdd:PRK08667 197 LGASA--GILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRflMDVLSPELWWGVLIL 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 221 SLLLFLSLLSAVVTVVQNDLKKFVAYSSVTHMTMIL---GLVVLgFGMLDSAVVCLM---------LSHGVLSNSMFFMV 288
Cdd:PRK08667 275 LAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiGLYVI-FGVYGLDTLALLalggalfhsLNHALFKSLLFLTA 353

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 726972251 289 GMLSNSSKTRLLFKQQGLLQLSPV--VWFFLAFLLFmsSSVPPSIGMVGEI 337
Cdd:PRK08667 354 GSVVHATGTRNIEKMGGLVKLMPYtsALFLVGAVSI--AALPPFNGFASEL 402
PRK12646 PRK12646
DUF4040 family protein;
80-312 1.35e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 47.44  E-value: 1.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  80 LSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVMGWTSLVWVNGVVVVVM 159
Cdd:PRK12646 128 LSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHG 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 160 MLPFII---------KLPVYLFHLWLPKAhVEAPVLGSMILAS-ILLKTGGYGLVKVGG-LSIGLDCAYNLVSLLLFLSL 228
Cdd:PRK12646 208 LFIPMIfmfllgaftKSAQFPFHIWLPRA-MAAPTPVSAYLHSaTMVKAGIFLLFRFTPlLGLSNMYIYIVTFVGLITML 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 229 LSAVVTVVQNDLKKFVAYSSVTHMTMILGLVVLG--------------FGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNS 294
Cdd:PRK12646 287 FGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasiYVFVLFAALFHLMNHAIFKCALFMGVGIIDHE 366

                        250
                 ....*....|....*...
gi 726972251 295 SKTRLLFKQQGLLQLSPV 312
Cdd:PRK12646 367 AGTRDIRILSGMRQLFPK 384
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 74-291 3.97e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 3.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  74 VLGLFFLSDNVMMFYVLFEVSIVPIYFIVLGWGNQPERLMAANYLMMYTLMFSFPLLVLIIRFLMDSSVmGWTSLVWVNG 153
Cdd:PRK07234 106 SVNAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTF-AFSGLATADP 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 154 VVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAynLVSLLLFLSLLSAVV 233
Cdd:PRK07234 185 EAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLI--VRIFGVGTALLGVLF 262

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 726972251 234 TVVQNDLKKFVAYSSVTHMTMIL-GLVVLGFgmldsavvcLMLSHGVLSNSMFFMVGML 291
Cdd:PRK07234 263 ALLEKDLKRMLAFSTISQLGFILaAPLVGGL---------YALAHGLVKSTLFLCAGAL 312
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 172-336 8.53e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 44.88  E-value: 8.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 172 FHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAYnLVSLLLFLSLLSAVVTVV----QNDLKKFVAYS 247
Cdd:PRK06521 229 LHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFDLLGAPGWW-WGVLVLALGAISAVLGVLyalaEHDLKRLLAYS 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 248 SVTHMTMI-----LGLVVLGFGMLDSAVVCLM------LSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPvvWFF 316
Cdd:PRK06521 308 TIENIGIIfvglgLAMVFIAYGMPLLAALALTaalyhlLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMP--WTA 385

                        170       180
                 ....*....|....*....|..
gi 726972251 317 LAFLL--FMSSSVPPSIGMVGE 336
Cdd:PRK06521 386 WAFLIgcLAISALPPLNGFVSE 407
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 172-335 9.88e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.52  E-value: 9.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 172 FHLWLPKAhVEAPVLGSMILAS-ILLKTGGYGLVK----VGGLSIGLDCaynLVSLLLFLSLLSAVVTVVQNDLKKFVAY 246
Cdd:PRK12647 214 FHFWLPNA-MEAPTPVSAYLHSaTMVKAGIYLLARlnpvLGGTPLWQTI---LPLFGGLTMLTGALLAVRQTDLKLILAY 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 247 SSVthmtMILGLVV--LGFGMLDS--AVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLF 322
Cdd:PRK12647 290 STV----SALGTLVmlLGLGSELAikAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAAL 365

                        170
                 ....*....|...
gi 726972251 323 MSSSVPPSIGMVG 335
Cdd:PRK12647 366 SMAGLPPLFGFLA 378
PRK12650 PRK12650
DUF4040 family protein;
172-334 1.75e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.88  E-value: 1.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 172 FHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAYNLVSLLLFLSLLSAVVTVVQ-NDLKKFVAYSSVT 250
Cdd:PRK12650 227 FHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWNWLLIIVGMITALMGAVFAVQkTDLKKLTAYSTVS 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 251 HMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPvvWFFLAFLLFMSS--SVP 328
Cdd:PRK12650 307 QLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMP--FTFVSVTIAALSmaAVP 384


                 ....*.
gi 726972251 329 PSIGMV 334
Cdd:PRK12650 385 PLFGFV 390
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 67-338 2.22e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 40.37  E-value: 2.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251  67 LVFVYSVVLGLFFLSDnVMMFYVLFEVSIVPIYFIVLgWGNQPERLMAANYLMMYTL-MFSFPLLVLII-------RFLM 138
Cdd:PRK08668 104 ALMSLAGVLGVFLAND-LLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIgAYAMLYAIFLIyaktgtfDFAD 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 139 DSSVMGWTSLVWVNGVVVVVMMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAYN 218
Cdd:PRK08668 182 ISQGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLFSE 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 219 LVSLLLFLS-------------LLSAVVTVVQNDLKKFVAYSSVTHmtmiLGLVVLGFGMLDS----AVVCLMLSHGVLS 281
Cdd:PRK08668 262 FGTYRGVPLfnyilawlgnisiIVGTLMAILQEDIKKLIAYSSVAN----GGYILVGLGLGTSlgfaGGLFHVFNHALFK 337

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 726972251 282 NSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSSVPPsigMVGEIS 338
Cdd:PRK08668 338 GLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPP---MSGFAS 391
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 175-329 2.99e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 39.75  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 175 WLPKAHVEAPVLGSMILASILLKTGGYGLVKVgglsIGLDCAYNLVSLLLFLSLLSAVVTVV--------QNDLKKFVAY 246
Cdd:PRK08377 228 WAPDAYQAAPHPITVMFSAFVVKAGLYAMARI----LYLMQNANGWSSVLKLVIIMATLTVFfaelsalrQKNVKRMIAY 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 247 SSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSPVVWFFLAFLLFMSSS 326
Cdd:PRK08377 304 SSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVG 383


                 ...
gi 726972251 327 VPP 329
Cdd:PRK08377 384 IPL 386
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 159-334 7.18e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 7.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 159 MMLPFIIKLPVYLFHLWLPKAHVEAPVLGSMILASILLKTGGYGLVKVGGLSIGLDCAYNLVSLLLFLSLLSAVVTVV-- 236
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVFKANFVFTTLPFNNVFMILAALAIVFgs 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972251 237 -----QNDLKKFVAYSSVTHMTMILGLVVLGFGMLDSAVVCLMLSHGVLSNSMFFMVGMLSNSSKTRLLFKQQGLLQLSP 311
Cdd:PRK12662 295 vlailSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMP 374

                        170       180
                 ....*....|....*....|...
gi 726972251 312 VVWFFLAFLLFMSSSVPPSIGMV 334
Cdd:PRK12662 375 KITLAFVLLSLSLIGMPPTSGFV 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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