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Conserved domains on  [gi|726972248|ref|YP_009110097|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Trichinella zimbabwensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-299 9.59e-77

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 236.20  E-value: 9.59e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTTTST-GFYHLEPVIMLTLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLF 239
Cdd:MTH00193 161 SFNLLDFMNyQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 726972248 240 SIL-----LLPWHSSLLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLMPSLNVKVL 299
Cdd:MTH00193 241 VLMflggdLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-299 9.59e-77

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 236.20  E-value: 9.59e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTTTST-GFYHLEPVIMLTLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLF 239
Cdd:MTH00193 161 SFNLLDFMNyQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 726972248 240 SIL-----LLPWHSSLLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLMPSLNVKVL 299
Cdd:MTH00193 241 VLMflggdLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
NADHdh pfam00146
NADH dehydrogenase;
8-291 1.40e-68

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 215.41  E-value: 1.40e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248    8 LLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLF 87
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   88 WWGLPLLYNPISFQMN--LLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLT 165
Cdd:pfam00146  82 FAVIPFGPGLVLADLNvgILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  166 T-----TSTGFYHLEPVIMLTLTIPAtimiLAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFS 240
Cdd:pfam00146 162 EiveaqAGGWFIPLQPLAFIVFFIAA----LAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAV 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 726972248  241 ILLL-----PWHSS------LLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:pfam00146 238 TLFLggwlgPFPLPgllwflLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLL 299
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 8-291 4.17e-63

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 201.90  E-value: 4.17e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   8 LLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLF 87
Cdd:COG1005   15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  88 WWGLPL--LYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLT 165
Cdd:COG1005   95 FAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLS 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 166 ------TTSTGFYHLEPVIMLTLTIPAtimiLAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLF 239
Cdd:COG1005  175 eiveaqAGGLWFILPQPLAFVVFFIAA----LAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 726972248 240 SILLL-----PWHSSLL------------TFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:COG1005  251 TTLFLggwlgPFPILPLgglpgilwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLV 319
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-299 9.59e-77

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 236.20  E-value: 9.59e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTTTST-GFYHLEPVIMLTLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLF 239
Cdd:MTH00193 161 SFNLLDFMNyQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 726972248 240 SIL-----LLPWHSSLLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLMPSLNVKVL 299
Cdd:MTH00193 241 VLMflggdLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 1-291 1.22e-75

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 233.61  E-value: 1.22e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTItIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00143   1 LVSLLSSVFTY-LCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00143  80 LILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTTTS-TGFYHLEPVIMLTLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLF 239
Cdd:MTH00143 160 SFSFIEISeSQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLT 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 726972248 240 SILLLPWHS----------SLLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:MTH00143 240 VVLFFGGSSvlfllggvvfMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-291 5.21e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 217.07  E-value: 5.21e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00111   4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00111  84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTTTSTGfyhLEPVIMLTLTIPATIM----ILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLS 236
Cdd:MTH00111 164 GYTLQTLATT---QEPLWLIFSSWPLAMMwyisTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 726972248 237 VLFSILLL-PWHSSLLTFLFISSVIMS-----------RSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:MTH00111 241 TLTTILFLnPSTLNLPPELFTINLMTKtllltsgflwiRASYPRFRYDQLMHLLWKQFLPLTLALCL 307
NADHdh pfam00146
NADH dehydrogenase;
8-291 1.40e-68

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 215.41  E-value: 1.40e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248    8 LLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLF 87
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   88 WWGLPLLYNPISFQMN--LLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLT 165
Cdd:pfam00146  82 FAVIPFGPGLVLADLNvgILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  166 T-----TSTGFYHLEPVIMLTLTIPAtimiLAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFS 240
Cdd:pfam00146 162 EiveaqAGGWFIPLQPLAFIVFFIAA----LAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAV 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 726972248  241 ILLL-----PWHSS------LLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:pfam00146 238 TLFLggwlgPFPLPgllwflLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLL 299
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 8-294 7.62e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 213.36  E-value: 7.62e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   8 LLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLF 87
Cdd:MTH00225   7 FLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  88 WWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLTTT 167
Cdd:MTH00225  87 WSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 168 STGFYHLEPVIML-TLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFSILLLPW 246
Cdd:MTH00225 167 SYNQKYFWFMFVLfPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGG 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 726972248 247 HSSLLTFLFISSVIM-------SRSTFPRIRYDTLMSLMWKSLLPVGISMLMPSL 294
Cdd:MTH00225 247 FFVTIDLFLILKIMLlafwfiwVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVL 301
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-291 1.96e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 212.46  E-value: 1.96e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTT---TSTGFYHLEPVIMLTLTIpaTIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSV 237
Cdd:MTH00218 161 GFSLEGfnlTQETIWLLIPEWPLALMW--FISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNT 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 726972248 238 LFSILLLPWHSSLL-----TFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:MTH00218 239 LSVILFLGTSLTTInlmlkATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLL 297
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 3-291 4.87e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 209.48  E-value: 4.87e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   3 LWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLT 82
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  83 LFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSY 162
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 163 NLTTTSTGFYHLEPVIML-TLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFSI 241
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSwPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 726972248 242 LLL-PWHSSLLTFLFISSVIMS-----------RSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:MTH00104 241 LFLgAFHNPYMPELYTTNFTIKtllltilflwiRASYPRFRYDQLMHLLWKNFLPLTLALCM 302
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 7-298 7.46e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 207.83  E-value: 7.46e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   7 NLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVL 86
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  87 FWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVcLSSMLLMVMMLKdsYNLTT 166
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEI-AFSLYLLSIMLH--NNSFS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 167 TSTGFyhlePVIMLTLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFSILLLPW 246
Cdd:MTH00090 158 FVSSF----SLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKF 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 726972248 247 hSSLLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLMPSLNVKV 298
Cdd:MTH00090 234 -SFLMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-291 1.63e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 207.94  E-value: 1.63e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00071   4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00071  84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTTTSTGfyhLEPVIMLTLTIPATIM----ILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLS 236
Cdd:MTH00071 164 GFSLMNFNTT---QEFMWLIIPAWPMAAMwfisTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 726972248 237 VLFSILLL-----PWHSSLLTF-LFISSVIMS------RSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:MTH00071 241 TLSTILFLgstynHLQPELSTMnLMIKASILSmlflwvRASYPRFRYDQLMHLVWKNFLPITLAMTI 307
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 7-291 1.86e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 202.91  E-value: 1.86e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   7 NLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVL 86
Cdd:MTH00134  11 NPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  87 FWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLTT 166
Cdd:MTH00134  91 LWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 167 TSTGfyhLEPVIMLTLTIPATIM----ILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFSIL 242
Cdd:MTH00134 171 FNTA---QESIWLLLPAWPLAAMwyisTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAIL 247

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 726972248 243 LL-----PWHSSLLTF-LFISSVIMS------RSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:MTH00134 248 FLgashiPTLPELTTInLMTKAALLSvvflwvRASYPRFRYDQLMHLVWKNFLPLTLALVI 308
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 8-291 4.17e-63

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 201.90  E-value: 4.17e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   8 LLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLF 87
Cdd:COG1005   15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  88 WWGLPL--LYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLT 165
Cdd:COG1005   95 FAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLS 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 166 ------TTSTGFYHLEPVIMLTLTIPAtimiLAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLF 239
Cdd:COG1005  175 eiveaqAGGLWFILPQPLAFVVFFIAA----LAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 726972248 240 SILLL-----PWHSSLL------------TFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:COG1005  251 TTLFLggwlgPFPILPLgglpgilwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLV 319
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-292 2.13e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 199.58  E-value: 2.13e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKD 160
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 161 SYNLTTTSTGFYHLEPVIMLT-LTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLF 239
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPpISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 726972248 240 SILLLPWHSS---LLTFLFISSV-IMSRSTFPRIRYDTLMSLMWKSLLPVGISMLMP 292
Cdd:MTH00195 241 TILFLGGGGTiivALKSLFLSFCfLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIP 297
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 2-290 1.01e-61

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 198.28  E-value: 1.01e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   2 LLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNL 81
Cdd:MTH00040   4 ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  82 TLFVLFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDS 161
Cdd:MTH00040  84 FLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 162 YNLTTTSTGfyhLEPVIMLTLTIPATIM----ILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSV 237
Cdd:MTH00040 164 FSLSSISNS---QNGSWLLFPCLPLFYIwfisTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 726972248 238 LFSILLLPWHSSLLTFLFISSVIMS-------------RSTFPRIRYDTLMSLMWKSLLPVGISML 290
Cdd:MTH00040 241 LSVILFLGGGSPFNEIFPINIIIVGikttflvflflwvRASYPRFRYDQLMFLTWKNYLPLSIGLL 306
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 8-291 4.22e-60

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 194.18  E-value: 4.22e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   8 LLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLF 87
Cdd:MTH00216  12 ILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  88 WWGLPLLYNPISFQMNL--LFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLT 165
Cdd:MTH00216  92 WGVIPYERGVLISDFKIgiLYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSIT 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 166 ----TTSTGFYHLEPVImltltiPATIM----ILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSV 237
Cdd:MTH00216 172 eivlAQNNGIWFFFPLF------PVAIMffasALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSC 245

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 726972248 238 LFSILLL-------------PWHSSLLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:MTH00216 246 LTTILFLggwlspikyfkggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVI 312
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-285 5.37e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 188.78  E-value: 5.37e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMN 80
Cdd:MTH00054   1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYNPISFQMNL--LFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMML 158
Cdd:MTH00054  81 LTLAFIAWGVIPYGEGVVLSDLGIgiLYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 159 KDSYNLTTTSTGFYHLEPVIMLtltIPATIM----ILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIIL 234
Cdd:MTH00054 161 VGSLNLTEIVLAQKNIWFIFPL---FPAAIMffvsALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIIL 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 726972248 235 LSVLFSILLLP--WHSSLLTFLFISSVIMS-------------RSTFPRIRYDTLMSLMWKSLLPV 285
Cdd:MTH00054 238 MSTFGVILFLGgwLVISGPTSYFSNFVWFGikialiiflfiwiRASYPRIRYDQLMALLWKSYLPL 303
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
11-291 6.33e-57

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 185.78  E-value: 6.33e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  11 ITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLFWWG 90
Cdd:PRK06076  19 ILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAV 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  91 LPLL--YNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLT--- 165
Cdd:PRK06076  99 IPFGpeLVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSdiv 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 166 -TTSTGFYHLEPVIMLTLTIpatIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFSILLL 244
Cdd:PRK06076 179 eAQFLSWNIIPQPPAFVVFF---IAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFL 255

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 726972248 245 -----PWHSS----------LLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLM 291
Cdd:PRK06076 256 ggwlpPFPLGggipgaiwfvLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLL 317
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 6-299 3.76e-56

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 183.83  E-value: 3.76e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   6 TNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFV 85
Cdd:MTH00010   7 ISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  86 LFWWGLPLLYNPISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLT 165
Cdd:MTH00010  87 LLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 166 TTSTGFYHLEPVIMLTLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFSILLLP 245
Cdd:MTH00010 167 KIIMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTS 246

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 726972248 246 WHSS---------LLTFLFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISMLMPSLNVKVL 299
Cdd:MTH00010 247 FIPSifisdlmliLKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFL 309
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 5-291 3.97e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 166.35  E-value: 3.97e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   5 TTNLLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLF 84
Cdd:MTH00029  10 TIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  85 VLFWWGLPLLYNPI--SFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSY 162
Cdd:MTH00029  90 ILAWAIVTMDQGVFlsDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 163 NLTTTSTGFYHLEPVIMLtltIPATIMI----LAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVL 238
Cdd:MTH00029 170 NISEIVISQRSVWLIIPL---FPAAIMFmvasLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCM 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 239 FSILLL-PWHSSLLTF---------------------------LFISSVIMSRSTFPRIRYDTLMSLMWKSLLPVGISML 290
Cdd:MTH00029 247 MTIFFLgGWLSPLDGIptppeafsifeqiasskssfwfftkssIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLV 326


                 .
gi 726972248 291 M 291
Cdd:MTH00029 327 I 327
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 13-290 1.34e-40

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 142.76  E-value: 1.34e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  13 IAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSsKKTNKLNPTLYLIMPTMNLTLFVLFWWGLP 92
Cdd:MTH00058  12 LIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKF-KVYGFQSRSWFSLFGVFLLVLLVVFYCFIY 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  93 LLYNPISFQMNLLFMITLMG-IMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSYNLTTTSTGF 171
Cdd:MTH00058  91 GSYYSGSYSSLSLLWFLVVTsFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSG 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 172 YHLEpVIMLTLTIPATIMILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILLSVLFSILLlpWHSSLL 251
Cdd:MTH00058 171 WLSV-LLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLF--FGGGFV 247

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 726972248 252 TFLFISSV---IMSRSTFPRIRYDTLMSLMWKSLLPVGISML 290
Cdd:MTH00058 248 SIMLLFHLlffMWARATLPRVRYDYFVNFFWEYCLVLLILSL 289
ndhA CHL00032
NADH dehydrogenase subunit 1
 8-285 1.47e-30

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 117.74  E-value: 1.47e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   8 LLTITIAILLSVAFVTLMERQYIGISQRRLGPNKAPITGLTQPILDGLKLMLKSSKKTNKLNPTLYLIMPTMNLTLFVLF 87
Cdd:CHL00032  33 ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLS 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  88 WWGLPLLYNPISFQMNL--LFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMMLKDSynLT 165
Cdd:CHL00032 113 YLVIPFGYHLVLADLSIgvFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS--LS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 166 T-------TSTGFYHL----EPVIMLTLTIPAtimiLAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYgMIIL 234
Cdd:CHL00032 191 TvdiveaqSKYGFWGWnlwrQPIGFIVFLISS----LAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY-LNLL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 235 LSVLF-SILLL-PWHSSL-------------------------------LTFLFISsvIMSRSTFPRIRYDTLMSLMWKS 281
Cdd:CHL00032 266 VSSLFvTVLYLgGWNLSIpyifipelfeinktggvfgttigifitlaktYLFLFIS--ITTRWTLPRLRMDQLLNLGWKF 343


                 ....
gi 726972248 282 LLPV 285
Cdd:CHL00032 344 LLPI 347
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-283 2.89e-23

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 96.79  E-value: 2.89e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248   1 MLLWTTNLLTITIAILLSVAFVTLMeRQYIGISQRRLGPnkapitGLTQPILDGLKLMLKSSKKTNKLNPtLYLIMPTMN 80
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGII-RKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVA 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248  81 LTLFVLFWWGLPLLYN--PISFQMNLLFMITLMGIMSFGIVLSGWVSNSKYATYGSLRSMSQSISYEVCLSSMLLMVMML 158
Cdd:COG0650   73 LAAMLLAALLVPVLTTgpPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 159 KDSYNLTTTSTGFYHLEPVIMLTLTIPATIM----ILAETNRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIIL 234
Cdd:COG0650  153 AGSTSLSDIVAYQAAHGPLLLSPSLLLAAIAffivLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFV 232

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 726972248 235 LSVLFSILLLPWHSSLLT-----------FLFISSVIMSRSTFPRIRYDTLMSLMWKSLL 283
Cdd:COG0650  233 LLSLFVNLFLPWGIALTLllalllfllklLVLAVLLAVIEASTARLRLFRVPDFLWTAFL 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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